AutismKB 2.0

Annotation Detail for SLC20A2


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Basic Information Top
Gene Symbol:SLC20A2 ( GLVR2,Glvr-2,MLVAR,PIT-2 )
Gene Full Name: solute carrier family 20 (phosphate transporter), member 2
Band: 8p11.21
Quick LinksEntrez ID:6575; OMIM: 158378; Uniprot ID:S20A2_HUMAN; ENSEMBL ID: ENSG00000168575; HGNC ID: 10947
Relate to Another Database: SFARIGene; denovo-db
Unigene EST Top
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
embryoid body5 / 7076170
blastocyst2 / 6231932
fetus48 / 56401285
neonate2 / 3109764
infant3 / 23620127
juvenile3 / 5555653
adult148 / 193912176
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
adrenal tumor1 / 1279478
bladder carcinoma0 / 174750 
breast (mammary gland) tumor3 / 9417831
cervical tumor1 / 3436629
chondrosarcoma5 / 8282360
colorectal tumor6 / 11424652
esophageal tumor6 / 17290347
gastrointestinal tumor6 / 11936950
germ cell tumor35 / 263845132
glioma9 / 10688384
head and neck tumor34 / 136302249
kidney tumor7 / 68959101
leukemia2 / 9584220
liver tumor5 / 9635951
lung tumor0 / 1031270 
lymphoma2 / 7175527
non-neoplasia5 / 9725051
normal404 / 3360307120
ovarian tumor4 / 7668252
pancreatic tumor10 / 10461695
primitive neuroectodermal tumor of the CNS2 / 12568015
prostate cancer0 / 1026800 
retinoblastoma0 / 463560 
skin tumor1 / 1249498
soft tissue/muscle tissue tumor3 / 12519123
uterine tumor2 / 9025722
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
adipose tissue0 / 131060 
adrenal gland3 / 3319790
ascites2 / 4001549
bladder2 / 2975767
blood1 / 1234788
bone3 / 7165541
bone marrow4 / 4880181
brain281 / 1100989255
cervix6 / 48171124
connective tissue5 / 14925533
ear1 / 1621261
embryonic tissue10 / 21572246
esophagus6 / 20209296
eye19 / 21105490
heart6 / 8962666
intestine14 / 23447259
kidney16 / 21177775
larynx11 / 24145455
liver10 / 20774348
lung22 / 33697465
lymph0 / 442700 
lymph node2 / 9161021
mammary gland8 / 15327152
mouth20 / 67052298
muscle11 / 107715102
nerve0 / 157680 
ovary5 / 10205148
pancreas13 / 21481260
parathyroid3 / 20539146
pharynx0 / 413280 
pituitary gland2 / 16585120
placenta14 / 28082549
prostate2 / 18934510
salivary gland0 / 201550 
skin24 / 210574113
spleen2 / 5395237
stomach1 / 9661910
testis62 / 330442187
thymus8 / 8113198
thyroid7 / 47473147
tonsil0 / 169990 
trachea16 / 52413305
umbilical cord0 / 136800 
uterus16 / 23287868
vascular3 / 5178057
Microarray in BioGPS Top
Select probe  
  • Microarray Platform: GeneAtlas U133A, gcrma
  • Affymatrix Probe ID: 202744_at
Cell line Expression level Expression bar
721_B_lymphoblasts6.6
Adipocyte6.55
AdrenalCortex7.45
Adrenalgland5.8
Amygdala17.8
Appendix8.1
AtrioventricularNode6.3
BDCA4+_DentriticCells6.05
Bonemarrow6.85
BronchialEpithelialCells17
CD105+_Endothelial6.4
CD14+_Monocytes6.8
CD19+_BCells(neg._sel.)5.45
CD33+_Myeloid7.25
CD34+7.65
CD4+_Tcells6.55
CD56+_NKCells7.15
CD71+_EarlyErythroid6.2
CD8+_Tcells5.7
CardiacMyocytes8.3
Caudatenucleus6
Cerebellum6.1
CerebellumPeduncles9.85
CiliaryGanglion5.5
CingulateCortex8.8
Colorectaladenocarcinoma6.85
DorsalRootGanglion7.25
FetalThyroid12.6
Fetalbrain6.45
Fetalliver5.8
Fetallung5.15
GlobusPallidus5.15
Heart11.85
Hypothalamus16.3
Kidney6.8
Leukemia_chronicMyelogenousK-5625.95
Leukemia_promyelocytic-HL-605.7
Leukemialymphoblastic(MOLT-4)5.15
Liver16.4
Lung13.6
Lymphnode6.1
Lymphoma_burkitts(Daudi)7.45
Lymphoma_burkitts(Raji)8.3
MedullaOblongata6.15
OccipitalLobe6.4
OlfactoryBulb5.4
Ovary4.55
Pancreas5.4
PancreaticIslet7.1
ParietalLobe7.8
Pituitary7.6
Placenta7.25
Pons6.65
PrefrontalCortex15.85
Prostate15.4
Salivarygland12.05
SkeletalMuscle7.45
Skin5.1
SmoothMuscle7.4
Spinalcord11.85
SubthalamicNucleus6.55
SuperiorCervicalGanglion10.95
TemporalLobe6.2
Testis8.4
TestisGermCell8.85
TestisIntersitial5.75
TestisLeydigCell7.25
TestisSeminiferousTubule5.7
Thalamus17.7
Thymus5.1
Thyroid212.8
Tongue6.65
Tonsil6.55
Trachea5.7
TrigeminalGanglion8.5
Uterus5.4
UterusCorpus5.75
WholeBlood7
Wholebrain34.3
colon25
pineal_day10.84
pineal_night11
retina43.95
small_intestine27.9
Allen Brain Atlas Top
Human Whole Brain Microarrayview in Allen Brain Atlas
  • Probe id     Donor id      
  • Probe name: CUST_917_PI416261804
  • Donor H0351.2001
  • Sex: Male     Age: 24 years     Race/Ethnicity: African American     Handedness: Left
  • Tissue Receipt Date: 7/29/2009     Serology: Pass      Tissue pH :6.72     Additional Medical Information :History of asthma
  • Postmortem Interval: 23 hours (estimated time of death to time that tissue is frozen)
  • Toxicology: Positive for atropine and caffeine, at levels usually not toxicologically significant
Tissue Expression(mean ± stddev) Expression Bar
Amygdala5.09 ± 0.49
Basal Forebrain5.25 ± 0.31
Basal Part of Pons6.15 ± 0.35
Cerebellar Cortex5.87 ± 0.23
Cerebellar Nuclei6.33 ± 0.49
Claustrum5.29 ± 0.62
Epithalamus5.41 ± 0.94
Frontal Lobe5.5 ± 0.64
Globus Pallidus5.93 ± 0.44
Hypothalamus5.47 ± 0.54
Insula5.05 ± 0.45
Limbic Lobe5.08 ± 0.47
Mesencephalon5.59 ± 0.65
Myelencephalon5.42 ± 0.52
Occipital Lobe5.56 ± 0.47
Parietal Lobe5.56 ± 0.5
Pontine Tegmentum5.55 ± 0.62
Striatum4.99 ± 0.61
Subthalamus5.71 ± 0.32
Temporal Lobe5.16 ± 0.51
Thalamus5.87 ± 0.35
White Matter6.39 ± 0.35
Mouse Brain ISH
Gene Symbol Brain Structure ID Brain Structure Name Express Desity/Level (Meatured by ISH) Express Bar
Slc20a2CBCerebellum47.49
100
Slc20a2CTXCerebral cortex24.19
17.95
Slc20a2HIPHippocampal region17.46
20.15
Slc20a2HPFHippocampal formation14.51
15.11
Slc20a2HYHypothalamus9.35
8.04
Slc20a2LSXLateral septal complex16.32
13.06
Slc20a2MBMidbrain10.03
10.28
Slc20a2MYMedulla20.9
23.2
Slc20a2OLFOlfactory bulb27.86
22.31
Slc20a2PPons9.42
9.22
Slc20a2PALPallidum7.26
6.13
Slc20a2RHPRetrohippocampal region10.87
9.38
Slc20a2sAMYStriatum-like amygdalar nuclei6.1
5.43
Slc20a2STRStriatum9.99
7.76
Slc20a2STRdStriatum dorsal region7.94
6.3
Slc20a2STRvStriatum ventral region15.89
10.8
Slc20a2THThalamus8.99
8.41
Peptide Top

Simple Query:


  (e.g. CHD8)

Syndromic Genes

Non-syndromic Genes

AutismKB Statistics

  • Studies: 1,036
  • Genes: 1,379
  • CNVs/SVs: 5,420
  • SNVs/Indels: 11,669
  • de novo Mutations: 5,669
  • Mosaics: 789
  • Linkage Regions: 172
  • Paper Collected: 6/30/2018
  • Last Update: 8/26/2018


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