AutismKB 2.0

Annotation Detail for SLC25A1


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Basic Information Top
Gene Symbol:SLC25A1 ( CTP,SLC20A3 )
Gene Full Name: solute carrier family 25 (mitochondrial carrier; citrate transporter), member 1
Band: 22q11.21
Quick LinksEntrez ID:6576; OMIM: 190315; Uniprot ID:TXTP_HUMAN; ENSEMBL ID: ENSG00000100075; HGNC ID: 10979
Relate to Another Database: SFARIGene; denovo-db
Unigene EST Top
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
embryoid body7 / 7076198
blastocyst9 / 62319144
fetus27 / 56401247
neonate0 / 310970 
infant1 / 2362042
juvenile3 / 5555653
adult121 / 193912162
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
adrenal tumor1 / 1279478
bladder carcinoma0 / 174750 
breast (mammary gland) tumor12 / 94178127
cervical tumor2 / 3436658
chondrosarcoma12 / 82823144
colorectal tumor11 / 11424696
esophageal tumor0 / 172900 
gastrointestinal tumor13 / 119369108
germ cell tumor24 / 26384590
glioma18 / 106883168
head and neck tumor18 / 136302132
kidney tumor9 / 68959130
leukemia10 / 95842104
liver tumor16 / 96359166
lung tumor15 / 103127145
lymphoma7 / 7175597
non-neoplasia2 / 9725020
normal185 / 336030755
ovarian tumor7 / 7668291
pancreatic tumor28 / 104616267
primitive neuroectodermal tumor of the CNS27 / 125680214
prostate cancer5 / 10268048
retinoblastoma2 / 4635643
skin tumor17 / 124949136
soft tissue/muscle tissue tumor12 / 12519195
uterine tumor8 / 9025788
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
adipose tissue6 / 13106457
adrenal gland1 / 3319730
ascites11 / 40015274
bladder1 / 2975733
blood9 / 12347872
bone15 / 71655209
bone marrow1 / 4880120
brain52 / 110098947
cervix3 / 4817162
connective tissue4 / 14925526
ear0 / 162120 
embryonic tissue26 / 215722120
esophagus1 / 2020949
eye26 / 211054123
heart3 / 8962633
intestine21 / 23447289
kidney15 / 21177770
larynx0 / 241450 
liver22 / 207743105
lung23 / 33697468
lymph4 / 4427090
lymph node5 / 9161054
mammary gland25 / 153271163
mouth0 / 670520 
muscle3 / 10771527
nerve2 / 15768126
ovary9 / 10205188
pancreas35 / 214812162
parathyroid0 / 205390 
pharynx1 / 4132824
pituitary gland0 / 165850 
placenta32 / 280825113
prostate8 / 18934542
salivary gland13 / 20155645
skin22 / 210574104
spleen3 / 5395255
stomach0 / 966190 
testis8 / 33044224
thymus2 / 8113124
thyroid4 / 4747384
tonsil2 / 16999117
trachea0 / 524130 
umbilical cord0 / 136800 
uterus17 / 23287872
vascular0 / 517800 
Microarray in BioGPS Top
Select probe  
  • Microarray Platform: GeneAtlas U133A, gcrma
  • Affymatrix Probe ID: 210010_s_at
Cell line Expression level Expression bar
721_B_lymphoblasts397.75
Adipocyte747.05
AdrenalCortex37.55
Adrenalgland43.5
Amygdala49.3
Appendix17.55
AtrioventricularNode13.75
BDCA4+_DentriticCells95.4
Bonemarrow26.75
BronchialEpithelialCells246.75
CD105+_Endothelial87.95
CD14+_Monocytes100.05
CD19+_BCells(neg._sel.)163
CD33+_Myeloid70.8
CD34+113.15
CD4+_Tcells47.3
CD56+_NKCells130.2
CD71+_EarlyErythroid80.4
CD8+_Tcells28
CardiacMyocytes93.5
Caudatenucleus21.15
Cerebellum18.7
CerebellumPeduncles24.65
CiliaryGanglion14.15
CingulateCortex14.3
Colorectaladenocarcinoma184.8
DorsalRootGanglion15.3
FetalThyroid34.65
Fetalbrain32.05
Fetalliver61.15
Fetallung39.15
GlobusPallidus11.95
Heart126.55
Hypothalamus47.25
Kidney111.6
Leukemia_chronicMyelogenousK-562360
Leukemia_promyelocytic-HL-6074.9
Leukemialymphoblastic(MOLT-4)144.3
Liver1683.35
Lung309.05
Lymphnode26.15
Lymphoma_burkitts(Daudi)47.3
Lymphoma_burkitts(Raji)608.85
MedullaOblongata12
OccipitalLobe21.5
OlfactoryBulb36.15
Ovary38.3
Pancreas36.6
PancreaticIslet53.65
ParietalLobe25.45
Pituitary31.75
Placenta36.15
Pons25.35
PrefrontalCortex68.05
Prostate466.35
Salivarygland16.9
SkeletalMuscle16.6
Skin19.7
SmoothMuscle91.95
Spinalcord73.4
SubthalamicNucleus20.85
SuperiorCervicalGanglion18.65
TemporalLobe23.05
Testis43.15
TestisGermCell43.85
TestisIntersitial25.15
TestisLeydigCell16.55
TestisSeminiferousTubule32.15
Thalamus20.25
Thymus41.2
Thyroid307.05
Tongue27.1
Tonsil20.65
Trachea20.55
TrigeminalGanglion28.9
Uterus47.15
UterusCorpus11.4
WholeBlood71.4
Wholebrain29.75
colon64.3
pineal_day18.18
pineal_night24.02
retina123.375
small_intestine74.25
Allen Brain Atlas Top
Human Whole Brain Microarrayview in Allen Brain Atlas
  • Probe id     Donor id      
  • Probe name: A_23_P120776
  • Donor H0351.2001
  • Sex: Male     Age: 24 years     Race/Ethnicity: African American     Handedness: Left
  • Tissue Receipt Date: 7/29/2009     Serology: Pass      Tissue pH :6.72     Additional Medical Information :History of asthma
  • Postmortem Interval: 23 hours (estimated time of death to time that tissue is frozen)
  • Toxicology: Positive for atropine and caffeine, at levels usually not toxicologically significant
Tissue Expression(mean ± stddev) Expression Bar
Amygdala6.04 ± 0.48
Basal Forebrain7.43 ± 0.54
Basal Part of Pons6.34 ± 0.32
Cerebellar Cortex6.38 ± 0.45
Cerebellar Nuclei6.89 ± 0.38
Claustrum5.77 ± 0.76
Epithalamus6.98 ± 0.47
Frontal Lobe6.63 ± 0.55
Globus Pallidus7.41 ± 0.4
Hypothalamus7.58 ± 0.44
Insula6.58 ± 0.45
Limbic Lobe6.34 ± 0.51
Mesencephalon6.59 ± 0.48
Myelencephalon6.61 ± 0.59
Occipital Lobe6.24 ± 0.41
Parietal Lobe6.33 ± 0.48
Pontine Tegmentum6.67 ± 0.64
Striatum6.86 ± 0.42
Subthalamus6.63 ± 0.18
Temporal Lobe6.53 ± 0.54
Thalamus6.55 ± 0.46
White Matter7.94 ± 0.34
Mouse Brain ISH
Gene Symbol Brain Structure ID Brain Structure Name Express Desity/Level (Meatured by ISH) Express Bar
Slc25a1RHPRetrohippocampal region17.6
10.62
Slc25a1sAMYStriatum-like amygdalar nuclei12.03
8.19
Peptide Top
Peptide Name Peptide Lengh Peptide Start Peptide End Peptide Sequence Source
PAp00002418 12 102 113 FGMFEFLSNHMR Peptide Atlas
TXTP_HUMAN_102 12 102 113 FGMFEFLSNHMR PRIDE

Simple Query:


  (e.g. CHD8)

Syndromic Genes

Non-syndromic Genes

AutismKB Statistics

  • Studies: 1,036
  • Genes: 1,379
  • CNVs/SVs: 5,420
  • SNVs/Indels: 11,669
  • de novo Mutations: 5,669
  • Mosaics: 789
  • Linkage Regions: 172
  • Paper Collected: 6/30/2018
  • Last Update: 8/26/2018


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