AutismKB 2.0

Annotation Detail for CAPRIN2


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Basic Information Top
Gene Symbol:CAPRIN2 ( C1QDC1,EEG-1,EEG1,FLJ11391,FLJ22569,KIAA1873,MGC102894,MGC134847,MGC134848,RNG140,caprin-2 )
Gene Full Name: caprin family member 2
Band: 12p11.21
Quick LinksEntrez ID:65981; OMIM: 610375; Uniprot ID:CAPR2_HUMAN; ENSEMBL ID: ENSG00000110888; HGNC ID: 21259
Relate to Another Database: SFARIGene; denovo-db
Unigene EST Top
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
embryoid body3 / 7076142
blastocyst8 / 62319128
fetus45 / 56401279
neonate1 / 3109732
infant0 / 236200 
juvenile2 / 5555635
adult90 / 193912146
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
adrenal tumor0 / 127940 
bladder carcinoma0 / 174750 
breast (mammary gland) tumor0 / 941780 
cervical tumor0 / 343660 
chondrosarcoma7 / 8282384
colorectal tumor5 / 11424643
esophageal tumor0 / 172900 
gastrointestinal tumor7 / 11936958
germ cell tumor11 / 26384541
glioma2 / 10688318
head and neck tumor3 / 13630222
kidney tumor4 / 6895958
leukemia2 / 9584220
liver tumor4 / 9635941
lung tumor3 / 10312729
lymphoma2 / 7175527
non-neoplasia0 / 972500 
normal151 / 336030744
ovarian tumor0 / 766820 
pancreatic tumor0 / 1046160 
primitive neuroectodermal tumor of the CNS0 / 1256800 
prostate cancer7 / 10268068
retinoblastoma2 / 4635643
skin tumor0 / 1249490 
soft tissue/muscle tissue tumor18 / 125191143
uterine tumor4 / 9025744
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
adipose tissue0 / 131060 
adrenal gland0 / 331970 
ascites1 / 4001524
bladder1 / 2975733
blood5 / 12347840
bone2 / 7165527
bone marrow0 / 488010 
brain56 / 110098950
cervix0 / 481710 
connective tissue23 / 149255154
ear4 / 16212246
embryonic tissue14 / 21572264
esophagus0 / 202090 
eye17 / 21105480
heart1 / 8962611
intestine12 / 23447251
kidney6 / 21177728
larynx1 / 2414541
liver9 / 20774343
lung6 / 33697417
lymph0 / 442700 
lymph node2 / 9161021
mammary gland1 / 1532716
mouth2 / 6705229
muscle4 / 10771537
nerve3 / 15768190
ovary1 / 1020519
pancreas3 / 21481213
parathyroid2 / 2053997
pharynx0 / 413280 
pituitary gland0 / 165850 
placenta1 / 2808253
prostate8 / 18934542
salivary gland0 / 201550 
skin4 / 21057418
spleen1 / 5395218
stomach5 / 9661951
testis11 / 33044233
thymus0 / 811310 
thyroid0 / 474730 
tonsil0 / 169990 
trachea1 / 5241319
umbilical cord1 / 1368073
uterus6 / 23287825
vascular1 / 5178019
Microarray in BioGPS Top
Select probe  
  • Microarray Platform: GeneAtlas U133A, gcrma
  • Affymatrix Probe ID: 218456_at
Cell line Expression level Expression bar
721_B_lymphoblasts19.6
Adipocyte30.65
AdrenalCortex24.4
Adrenalgland9.8
Amygdala132.2
Appendix24.65
AtrioventricularNode50.65
BDCA4+_DentriticCells26.65
Bonemarrow13.85
BronchialEpithelialCells58.35
CD105+_Endothelial419.9
CD14+_Monocytes14.3
CD19+_BCells(neg._sel.)48.05
CD33+_Myeloid25.2
CD34+162.8
CD4+_Tcells337.65
CD56+_NKCells93.8
CD71+_EarlyErythroid338.6
CD8+_Tcells328.3
CardiacMyocytes31.35
Caudatenucleus94.1
Cerebellum30.95
CerebellumPeduncles33
CiliaryGanglion47.8
CingulateCortex119.2
Colorectaladenocarcinoma53.75
DorsalRootGanglion122.25
FetalThyroid20.95
Fetalbrain260.95
Fetalliver27.35
Fetallung53.4
GlobusPallidus56.6
Heart7.05
Hypothalamus364.8
Kidney6
Leukemia_chronicMyelogenousK-56215.2
Leukemia_promyelocytic-HL-605.75
Leukemialymphoblastic(MOLT-4)33.7
Liver8.55
Lung14.45
Lymphnode109.95
Lymphoma_burkitts(Daudi)24.7
Lymphoma_burkitts(Raji)16.4
MedullaOblongata88.55
OccipitalLobe82.65
OlfactoryBulb180
Ovary13.75
Pancreas33.55
PancreaticIslet52.7
ParietalLobe42.15
Pituitary91.7
Placenta5.2
Pons46.25
PrefrontalCortex415.65
Prostate18.3
Salivarygland30.65
SkeletalMuscle19.95
Skin43.1
SmoothMuscle45.05
Spinalcord131.6
SubthalamicNucleus76.8
SuperiorCervicalGanglion20.15
TemporalLobe37.65
Testis47.6
TestisGermCell207.5
TestisIntersitial135.15
TestisLeydigCell50.2
TestisSeminiferousTubule112.7
Thalamus98.15
Thymus23.75
Thyroid45.1
Tongue15.5
Tonsil38.55
Trachea12.6
TrigeminalGanglion51.35
Uterus61.55
UterusCorpus27.45
WholeBlood18.85
Wholebrain30.4
colon18.7
pineal_day364.52
pineal_night328.1
retina33.7
small_intestine12.5
Allen Brain Atlas Top
Human Whole Brain Microarrayview in Allen Brain Atlas
  • Probe id     Donor id      
  • Probe name: A_24_P400675
  • Donor H0351.2001
  • Sex: Male     Age: 24 years     Race/Ethnicity: African American     Handedness: Left
  • Tissue Receipt Date: 7/29/2009     Serology: Pass      Tissue pH :6.72     Additional Medical Information :History of asthma
  • Postmortem Interval: 23 hours (estimated time of death to time that tissue is frozen)
  • Toxicology: Positive for atropine and caffeine, at levels usually not toxicologically significant
Tissue Expression(mean ± stddev) Expression Bar
Amygdala8.04 ± 0.24
Basal Forebrain7.83 ± 0.32
Basal Part of Pons7.72 ± 0.14
Cerebellar Cortex7.91 ± 0.27
Cerebellar Nuclei7.71 ± 0.39
Claustrum8.23 ± 0.48
Epithalamus7.36 ± 0.41
Frontal Lobe7.63 ± 0.34
Globus Pallidus7.48 ± 0.24
Hypothalamus7.97 ± 0.78
Insula7.66 ± 0.25
Limbic Lobe7.99 ± 0.26
Mesencephalon7.74 ± 0.4
Myelencephalon7.79 ± 0.38
Occipital Lobe8.02 ± 0.25
Parietal Lobe7.77 ± 0.38
Pontine Tegmentum7.81 ± 0.4
Striatum8.02 ± 0.31
Subthalamus8.04 ± 0.12
Temporal Lobe7.84 ± 0.29
Thalamus7.72 ± 0.28
White Matter7.01 ± 0.25
Mouse Brain ISH
Gene Symbol Brain Structure ID Brain Structure Name Express Desity/Level (Meatured by ISH) Express Bar
C1qdc1CBCerebellum1.46
1.92
C1qdc1CTXCerebral cortex2.36
2.72
C1qdc1HIPHippocampal region1.27
1.24
C1qdc1HPFHippocampal formation1.11
1.16
C1qdc1HYHypothalamus0.97
0.93
C1qdc1LSXLateral septal complex0.21
0.12
C1qdc1MBMidbrain5.73
8.83
C1qdc1MYMedulla2.68
3.13
C1qdc1OLFOlfactory bulb0.9
0.85
C1qdc1PPons2.29
3.14
C1qdc1PALPallidum0.78
0.74
C1qdc1RHPRetrohippocampal region0.88
1.12
C1qdc1sAMYStriatum-like amygdalar nuclei0.59
0.65
C1qdc1STRStriatum0.37
0.34
C1qdc1STRdStriatum dorsal region0.4
0.3
C1qdc1STRvStriatum ventral region0.3
0.44
C1qdc1THThalamus1.05
1.32
Peptide Top

Simple Query:


  (e.g. CHD8)

Syndromic Genes

Non-syndromic Genes

AutismKB Statistics

  • Studies: 1,036
  • Genes: 1,379
  • CNVs/SVs: 5,420
  • SNVs/Indels: 11,669
  • de novo Mutations: 5,669
  • Mosaics: 789
  • Linkage Regions: 172
  • Paper Collected: 6/30/2018
  • Last Update: 8/26/2018


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