AutismKB 2.0

Annotation Detail for TRAK2


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Basic Information Top
Gene Symbol:TRAK2 ( ALS2CR3,CALS-C,GRIF-1,GRIF1,KIAA0549,OIP98 )
Gene Full Name: trafficking protein, kinesin binding 2
Band: 2q33.1
Quick LinksEntrez ID:66008; OMIM: 607334; Uniprot ID:TRAK2_HUMAN; ENSEMBL ID: ENSG00000115993; HGNC ID: 13206
Relate to Another Database: SFARIGene; denovo-db
Unigene EST Top
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
embryoid body3 / 7076142
blastocyst1 / 6231916
fetus73 / 564012129
neonate0 / 310970 
infant0 / 236200 
juvenile3 / 5555653
adult120 / 193912161
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
adrenal tumor0 / 127940 
bladder carcinoma1 / 1747557
breast (mammary gland) tumor4 / 9417842
cervical tumor3 / 3436687
chondrosarcoma13 / 82823156
colorectal tumor4 / 11424635
esophageal tumor0 / 172900 
gastrointestinal tumor5 / 11936941
germ cell tumor16 / 26384560
glioma0 / 1068830 
head and neck tumor11 / 13630280
kidney tumor7 / 68959101
leukemia1 / 9584210
liver tumor8 / 9635983
lung tumor5 / 10312748
lymphoma1 / 7175513
non-neoplasia8 / 9725082
normal262 / 336030777
ovarian tumor2 / 7668226
pancreatic tumor0 / 1046160 
primitive neuroectodermal tumor of the CNS1 / 1256807
prostate cancer2 / 10268019
retinoblastoma3 / 4635664
skin tumor12 / 12494996
soft tissue/muscle tissue tumor7 / 12519155
uterine tumor5 / 9025755
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
adipose tissue0 / 131060 
adrenal gland0 / 331970 
ascites0 / 400150 
bladder1 / 2975733
blood4 / 12347832
bone6 / 7165583
bone marrow3 / 4880161
brain72 / 110098965
cervix3 / 4817162
connective tissue8 / 14925553
ear0 / 162120 
embryonic tissue6 / 21572227
esophagus0 / 202090 
eye18 / 21105485
heart8 / 8962689
intestine9 / 23447238
kidney21 / 21177799
larynx2 / 2414582
liver17 / 20774381
lung32 / 33697494
lymph0 / 442700 
lymph node4 / 9161043
mammary gland6 / 15327139
mouth3 / 6705244
muscle6 / 10771555
nerve1 / 1576863
ovary2 / 10205119
pancreas0 / 2148120 
parathyroid7 / 20539340
pharynx1 / 4132824
pituitary gland0 / 165850 
placenta21 / 28082574
prostate8 / 18934542
salivary gland1 / 2015549
skin32 / 210574151
spleen4 / 5395274
stomach5 / 9661951
testis12 / 33044236
thymus3 / 8113136
thyroid8 / 47473168
tonsil0 / 169990 
trachea6 / 52413114
umbilical cord2 / 13680146
uterus19 / 23287881
vascular3 / 5178057
Microarray in BioGPS Top
Select probe  
  • Microarray Platform: GeneAtlas U133A, gcrma
  • Affymatrix Probe ID: 202124_s_at
Cell line Expression level Expression bar
721_B_lymphoblasts17.15
Adipocyte30.3
AdrenalCortex12.35
Adrenalgland16.2
Amygdala16.5
Appendix14.75
AtrioventricularNode11.05
BDCA4+_DentriticCells15.85
Bonemarrow43.55
BronchialEpithelialCells11.2
CD105+_Endothelial214.85
CD14+_Monocytes14.8
CD19+_BCells(neg._sel.)88.7
CD33+_Myeloid33.05
CD34+42.55
CD4+_Tcells43.45
CD56+_NKCells58.85
CD71+_EarlyErythroid1564.7
CD8+_Tcells46.3
CardiacMyocytes18.9
Caudatenucleus22.7
Cerebellum11.65
CerebellumPeduncles19.1
CiliaryGanglion8.95
CingulateCortex26
Colorectaladenocarcinoma9.25
DorsalRootGanglion12.65
FetalThyroid30.55
Fetalbrain16.5
Fetalliver124.65
Fetallung28.45
GlobusPallidus11.85
Heart12.4
Hypothalamus43.1
Kidney11.4
Leukemia_chronicMyelogenousK-56210.85
Leukemia_promyelocytic-HL-607.5
Leukemialymphoblastic(MOLT-4)7.9
Liver15.15
Lung10.9
Lymphnode11.6
Lymphoma_burkitts(Daudi)12.9
Lymphoma_burkitts(Raji)15.3
MedullaOblongata27.3
OccipitalLobe20
OlfactoryBulb33.1
Ovary7.6
Pancreas9.15
PancreaticIslet11.2
ParietalLobe16.45
Pituitary31.45
Placenta13.5
Pons21.85
PrefrontalCortex74.75
Prostate13.85
Salivarygland9.6
SkeletalMuscle15.2
Skin9.05
SmoothMuscle13.95
Spinalcord65.8
SubthalamicNucleus21.65
SuperiorCervicalGanglion22.5
TemporalLobe14.35
Testis7.25
TestisGermCell6.8
TestisIntersitial8.45
TestisLeydigCell11.4
TestisSeminiferousTubule10.6
Thalamus27.3
Thymus10.05
Thyroid21.15
Tongue15.55
Tonsil9.4
Trachea10.5
TrigeminalGanglion13.15
Uterus13.45
UterusCorpus14.85
WholeBlood13.4
Wholebrain16.7
colon49.3
pineal_day31.5
pineal_night41.56
retina44.8
small_intestine14.4
Allen Brain Atlas Top
Human Whole Brain Microarrayview in Allen Brain Atlas
  • Probe id     Donor id      
  • Probe name: A_24_P122874
  • Donor H0351.2001
  • Sex: Male     Age: 24 years     Race/Ethnicity: African American     Handedness: Left
  • Tissue Receipt Date: 7/29/2009     Serology: Pass      Tissue pH :6.72     Additional Medical Information :History of asthma
  • Postmortem Interval: 23 hours (estimated time of death to time that tissue is frozen)
  • Toxicology: Positive for atropine and caffeine, at levels usually not toxicologically significant
Tissue Expression(mean ± stddev) Expression Bar
Amygdala6.86 ± 0.44
Basal Forebrain7.36 ± 0.46
Basal Part of Pons7.47 ± 0.28
Cerebellar Cortex7.24 ± 0.46
Cerebellar Nuclei7.78 ± 0.41
Claustrum7.21 ± 0.34
Epithalamus7.49 ± 0.27
Frontal Lobe7.08 ± 0.33
Globus Pallidus8.19 ± 0.33
Hypothalamus6.85 ± 0.5
Insula6.92 ± 0.23
Limbic Lobe7.16 ± 0.38
Mesencephalon7.24 ± 0.48
Myelencephalon7.26 ± 0.47
Occipital Lobe7.71 ± 0.36
Parietal Lobe7.18 ± 0.37
Pontine Tegmentum7.27 ± 0.41
Striatum7.69 ± 0.58
Subthalamus7.51 ± 0.36
Temporal Lobe7.03 ± 0.35
Thalamus7.36 ± 0.33
White Matter8.39 ± 0.3
Mouse Brain ISH
Peptide Top

Simple Query:


  (e.g. CHD8)

Syndromic Genes

Non-syndromic Genes

AutismKB Statistics

  • Studies: 1,036
  • Genes: 1,379
  • CNVs/SVs: 5,420
  • SNVs/Indels: 11,669
  • de novo Mutations: 5,669
  • Mosaics: 789
  • Linkage Regions: 172
  • Paper Collected: 6/30/2018
  • Last Update: 8/26/2018


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