AutismKB 2.0

Annotation Detail for SNAPC4


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Basic Information Top
Gene Symbol:SNAPC4 ( FLJ13451,PTFalpha,SNAP190 )
Gene Full Name: small nuclear RNA activating complex, polypeptide 4, 190kDa
Band: 9q34.3
Quick LinksEntrez ID:6621; OMIM: 602777; Uniprot ID:SNPC4_HUMAN; ENSEMBL ID: ENSG00000165684; HGNC ID: 11137
Relate to Another Database: SFARIGene; denovo-db
Unigene EST Top
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
embryoid body1 / 7076114
blastocyst1 / 6231916
fetus3 / 5640125
neonate0 / 310970 
infant0 / 236200 
juvenile0 / 555560 
adult29 / 193912114
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
adrenal tumor0 / 127940 
bladder carcinoma0 / 174750 
breast (mammary gland) tumor3 / 9417831
cervical tumor0 / 343660 
chondrosarcoma0 / 828230 
colorectal tumor2 / 11424617
esophageal tumor0 / 172900 
gastrointestinal tumor1 / 1193698
germ cell tumor0 / 2638450 
glioma3 / 10688328
head and neck tumor0 / 1363020 
kidney tumor2 / 6895929
leukemia0 / 958420 
liver tumor0 / 963590 
lung tumor2 / 10312719
lymphoma3 / 7175541
non-neoplasia0 / 972500 
normal32 / 33603079
ovarian tumor0 / 766820 
pancreatic tumor1 / 1046169
primitive neuroectodermal tumor of the CNS2 / 12568015
prostate cancer0 / 1026800 
retinoblastoma0 / 463560 
skin tumor6 / 12494948
soft tissue/muscle tissue tumor1 / 1251917
uterine tumor3 / 9025733
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
adipose tissue0 / 131060 
adrenal gland0 / 331970 
ascites1 / 4001524
bladder0 / 297570 
blood0 / 1234780 
bone0 / 716550 
bone marrow0 / 488010 
brain6 / 11009895
cervix0 / 481710 
connective tissue0 / 1492550 
ear0 / 162120 
embryonic tissue3 / 21572213
esophagus0 / 202090 
eye3 / 21105414
heart0 / 896260 
intestine3 / 23447212
kidney5 / 21177723
larynx0 / 241450 
liver0 / 2077430 
lung3 / 3369748
lymph3 / 4427067
lymph node0 / 916100 
mammary gland3 / 15327119
mouth0 / 670520 
muscle1 / 1077159
nerve2 / 15768126
ovary0 / 1020510 
pancreas2 / 2148129
parathyroid0 / 205390 
pharynx0 / 413280 
pituitary gland0 / 165850 
placenta4 / 28082514
prostate2 / 18934510
salivary gland0 / 201550 
skin6 / 21057428
spleen0 / 539520 
stomach0 / 966190 
testis3 / 3304429
thymus2 / 8113124
thyroid0 / 474730 
tonsil0 / 169990 
trachea0 / 524130 
umbilical cord0 / 136800 
uterus5 / 23287821
vascular0 / 517800 
Microarray in BioGPS Top
Select probe  
  • Microarray Platform: GeneAtlas U133A, gcrma
  • Affymatrix Probe ID: 215926_x_at
Cell line Expression level Expression bar
721_B_lymphoblasts17.55
Adipocyte14.05
AdrenalCortex14.7
Adrenalgland12.1
Amygdala17.7
Appendix13.6
AtrioventricularNode10.5
BDCA4+_DentriticCells15.45
Bonemarrow14.85
BronchialEpithelialCells14.05
CD105+_Endothelial15.4
CD14+_Monocytes15.3
CD19+_BCells(neg._sel.)15.45
CD33+_Myeloid18.35
CD34+41.95
CD4+_Tcells14.45
CD56+_NKCells15.9
CD71+_EarlyErythroid8.5
CD8+_Tcells13.7
CardiacMyocytes17.2
Caudatenucleus12.95
Cerebellum11.8
CerebellumPeduncles23.3
CiliaryGanglion9.4
CingulateCortex15.8
Colorectaladenocarcinoma18.25
DorsalRootGanglion10.3
FetalThyroid17.75
Fetalbrain16.75
Fetalliver12.75
Fetallung11.65
GlobusPallidus10.8
Heart18.7
Hypothalamus16.25
Kidney11.4
Leukemia_chronicMyelogenousK-56213.4
Leukemia_promyelocytic-HL-6015.3
Leukemialymphoblastic(MOLT-4)12.1
Liver18.5
Lung16.05
Lymphnode15.35
Lymphoma_burkitts(Daudi)21.65
Lymphoma_burkitts(Raji)21.7
MedullaOblongata13.35
OccipitalLobe11.95
OlfactoryBulb9.1
Ovary9.5
Pancreas10.85
PancreaticIslet15.3
ParietalLobe15.3
Pituitary16.9
Placenta13.65
Pons14.3
PrefrontalCortex17.25
Prostate16.85
Salivarygland10.85
SkeletalMuscle19.35
Skin11.1
SmoothMuscle16.15
Spinalcord15.4
SubthalamicNucleus11.4
SuperiorCervicalGanglion15.8
TemporalLobe12.4
Testis15.85
TestisGermCell14.5
TestisIntersitial15.9
TestisLeydigCell14.25
TestisSeminiferousTubule15.05
Thalamus14.75
Thymus14.6
Thyroid20.2
Tongue15.3
Tonsil15.2
Trachea14.25
TrigeminalGanglion14.3
Uterus11.5
UterusCorpus14.75
WholeBlood15.55
Wholebrain14
colon14.2
pineal_day17.36
pineal_night16.94
retina17.525
small_intestine12.85
Allen Brain Atlas Top
Human Whole Brain Microarrayview in Allen Brain Atlas
  • Probe id     Donor id      
  • Probe name: A_23_P20728
  • Donor H0351.2001
  • Sex: Male     Age: 24 years     Race/Ethnicity: African American     Handedness: Left
  • Tissue Receipt Date: 7/29/2009     Serology: Pass      Tissue pH :6.72     Additional Medical Information :History of asthma
  • Postmortem Interval: 23 hours (estimated time of death to time that tissue is frozen)
  • Toxicology: Positive for atropine and caffeine, at levels usually not toxicologically significant
Tissue Expression(mean ± stddev) Expression Bar
Amygdala5.39 ± 0.52
Basal Forebrain5.52 ± 0.36
Basal Part of Pons5.68 ± 0.26
Cerebellar Cortex5.89 ± 0.4
Cerebellar Nuclei5.14 ± 0.47
Claustrum5.4 ± 0.67
Epithalamus5.95 ± 0.59
Frontal Lobe5.6 ± 0.46
Globus Pallidus4.73 ± 0.42
Hypothalamus5.34 ± 0.62
Insula5.75 ± 0.34
Limbic Lobe5.49 ± 0.54
Mesencephalon5.4 ± 0.5
Myelencephalon5.53 ± 0.53
Occipital Lobe5.41 ± 0.49
Parietal Lobe5.57 ± 0.45
Pontine Tegmentum5.48 ± 0.47
Striatum5.11 ± 0.51
Subthalamus5.2 ± 0.64
Temporal Lobe5.75 ± 0.37
Thalamus5.47 ± 0.38
White Matter4.81 ± 0.54
Mouse Brain ISH
Gene Symbol Brain Structure ID Brain Structure Name Express Desity/Level (Meatured by ISH) Express Bar
Snapc4CBCerebellum94.8
100
Snapc4CTXCerebral cortex100
98.91
Snapc4HIPHippocampal region82.99
100
Snapc4HPFHippocampal formation89.97
100
Snapc4HYHypothalamus100
85.34
Snapc4LSXLateral septal complex100
100
Snapc4MBMidbrain88.2
74.64
Snapc4MYMedulla89.98
92.96
Snapc4OLFOlfactory bulb100
100
Snapc4PPons91.09
93.65
Snapc4PALPallidum96.54
83.7
Snapc4RHPRetrohippocampal region100
85.34
Snapc4sAMYStriatum-like amygdalar nuclei100
100
Snapc4STRStriatum100
74.02
Snapc4STRdStriatum dorsal region80.83
54.44
Snapc4STRvStriatum ventral region100
84.45
Snapc4THThalamus100
95.27
Peptide Top
Peptide Name Peptide Lengh Peptide Start Peptide End Peptide Sequence Source
PAp00504914 33 1150 1182 TDTPAPPTHALSQSPAEADGSVAFVPGEAQVAR Peptide Atlas

Simple Query:


  (e.g. CHD8)

Syndromic Genes

Non-syndromic Genes

AutismKB Statistics

  • Studies: 1,036
  • Genes: 1,379
  • CNVs/SVs: 5,420
  • SNVs/Indels: 11,669
  • de novo Mutations: 5,669
  • Mosaics: 789
  • Linkage Regions: 172
  • Paper Collected: 6/30/2018
  • Last Update: 8/26/2018


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