Annotation Detail for SNRPD3


Gene Symbol: | SNRPD3 ( SMD3,Sm-D3 ) |
---|---|
Gene Full Name: | small nuclear ribonucleoprotein D3 polypeptide 18kDa |
Band: | 22q11.23 |
Quick Links | Entrez ID:6634; OMIM: 601062; Uniprot ID:SMD3_HUMAN; ENSEMBL ID: ENSG00000100028; HGNC ID: 11160 |
Relate to Another Database: | SFARIGene; denovo-db |
- Unigene ID: Hs.356549
Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
---|---|---|---|
![]() | |||
embryoid body | 6 / 70761 | 84 | ![]() |
blastocyst | 3 / 62319 | 48 | ![]() |
fetus | 35 / 564012 | 62 | ![]() |
neonate | 0 / 31097 | 0 | |
infant | 0 / 23620 | 0 | |
juvenile | 5 / 55556 | 89 | ![]() |
adult | 95 / 1939121 | 48 | ![]() |
Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
---|---|---|---|
![]() | |||
adrenal tumor | 1 / 12794 | 78 | ![]() |
bladder carcinoma | 2 / 17475 | 114 | ![]() |
breast (mammary gland) tumor | 7 / 94178 | 74 | ![]() |
cervical tumor | 1 / 34366 | 29 | ![]() |
chondrosarcoma | 6 / 82823 | 72 | ![]() |
colorectal tumor | 8 / 114246 | 70 | ![]() |
esophageal tumor | 1 / 17290 | 57 | ![]() |
gastrointestinal tumor | 4 / 119369 | 33 | ![]() |
germ cell tumor | 10 / 263845 | 37 | ![]() |
glioma | 8 / 106883 | 74 | ![]() |
head and neck tumor | 6 / 136302 | 44 | ![]() |
kidney tumor | 1 / 68959 | 14 | ![]() |
leukemia | 8 / 95842 | 83 | ![]() |
liver tumor | 14 / 96359 | 145 | ![]() |
lung tumor | 12 / 103127 | 116 | ![]() |
lymphoma | 12 / 71755 | 167 | ![]() |
non-neoplasia | 1 / 97250 | 10 | ![]() |
normal | 147 / 3360307 | 43 | ![]() |
ovarian tumor | 8 / 76682 | 104 | ![]() |
pancreatic tumor | 1 / 104616 | 9 | ![]() |
primitive neuroectodermal tumor of the CNS | 7 / 125680 | 55 | ![]() |
prostate cancer | 5 / 102680 | 48 | ![]() |
retinoblastoma | 3 / 46356 | 64 | ![]() |
skin tumor | 9 / 124949 | 72 | ![]() |
soft tissue/muscle tissue tumor | 14 / 125191 | 111 | ![]() |
uterine tumor | 7 / 90257 | 77 | ![]() |
Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
---|---|---|---|
![]() | |||
adipose tissue | 1 / 13106 | 76 | ![]() |
adrenal gland | 1 / 33197 | 30 | ![]() |
ascites | 3 / 40015 | 74 | ![]() |
bladder | 0 / 29757 | 0 | |
blood | 7 / 123478 | 56 | ![]() |
bone | 5 / 71655 | 69 | ![]() |
bone marrow | 3 / 48801 | 61 | ![]() |
brain | 36 / 1100989 | 32 | ![]() |
cervix | 1 / 48171 | 20 | ![]() |
connective tissue | 0 / 149255 | 0 | |
ear | 0 / 16212 | 0 | |
embryonic tissue | 20 / 215722 | 92 | ![]() |
esophagus | 1 / 20209 | 49 | ![]() |
eye | 12 / 211054 | 56 | ![]() |
heart | 9 / 89626 | 100 | ![]() |
intestine | 15 / 234472 | 63 | ![]() |
kidney | 4 / 211777 | 18 | ![]() |
larynx | 2 / 24145 | 82 | ![]() |
liver | 17 / 207743 | 81 | ![]() |
lung | 24 / 336974 | 71 | ![]() |
lymph | 8 / 44270 | 180 | ![]() |
lymph node | 4 / 91610 | 43 | ![]() |
mammary gland | 10 / 153271 | 65 | ![]() |
mouth | 2 / 67052 | 29 | ![]() |
muscle | 6 / 107715 | 55 | ![]() |
nerve | 2 / 15768 | 126 | ![]() |
ovary | 9 / 102051 | 88 | ![]() |
pancreas | 14 / 214812 | 65 | ![]() |
parathyroid | 4 / 20539 | 194 | ![]() |
pharynx | 1 / 41328 | 24 | ![]() |
pituitary gland | 0 / 16585 | 0 | |
placenta | 6 / 280825 | 21 | ![]() |
prostate | 10 / 189345 | 52 | ![]() |
salivary gland | 0 / 20155 | 0 | |
skin | 13 / 210574 | 61 | ![]() |
spleen | 0 / 53952 | 0 | |
stomach | 3 / 96619 | 31 | ![]() |
testis | 9 / 330442 | 27 | ![]() |
thymus | 4 / 81131 | 49 | ![]() |
thyroid | 3 / 47473 | 63 | ![]() |
tonsil | 0 / 16999 | 0 | |
trachea | 1 / 52413 | 19 | ![]() |
umbilical cord | 0 / 13680 | 0 | |
uterus | 16 / 232878 | 68 | ![]() |
vascular | 2 / 51780 | 38 | ![]() |
- Microarray Platform: GeneAtlas U133A, gcrma
- Affymatrix Probe ID: 202567_at
Cell line | Expression level | Expression bar |
---|---|---|
![]() | ||
721_B_lymphoblasts | 1603.4 | ![]() |
Adipocyte | 210.85 | ![]() |
AdrenalCortex | 70.7 | ![]() |
Adrenalgland | 142.75 | ![]() |
Amygdala | 89.35 | ![]() |
Appendix | 31.05 | ![]() |
AtrioventricularNode | 41.8 | ![]() |
BDCA4+_DentriticCells | 989.3 | ![]() |
Bonemarrow | 151.65 | ![]() |
BronchialEpithelialCells | 688.2 | ![]() |
CD105+_Endothelial | 1445.25 | ![]() |
CD14+_Monocytes | 782.95 | ![]() |
CD19+_BCells(neg._sel.) | 1272.4 | ![]() |
CD33+_Myeloid | 886.35 | ![]() |
CD34+ | 1690.2 | ![]() |
CD4+_Tcells | 678.5 | ![]() |
CD56+_NKCells | 1395.5 | ![]() |
CD71+_EarlyErythroid | 743.35 | ![]() |
CD8+_Tcells | 745.8 | ![]() |
CardiacMyocytes | 240.05 | ![]() |
Caudatenucleus | 37.2 | ![]() |
Cerebellum | 31.75 | ![]() |
CerebellumPeduncles | 80.25 | ![]() |
CiliaryGanglion | 12.35 | ![]() |
CingulateCortex | 66.95 | ![]() |
Colorectaladenocarcinoma | 142.85 | ![]() |
DorsalRootGanglion | 38.8 | ![]() |
FetalThyroid | 290.9 | ![]() |
Fetalbrain | 161.35 | ![]() |
Fetalliver | 203.55 | ![]() |
Fetallung | 381.6 | ![]() |
GlobusPallidus | 26.65 | ![]() |
Heart | 64.45 | ![]() |
Hypothalamus | 202.85 | ![]() |
Kidney | 95.15 | ![]() |
Leukemia_chronicMyelogenousK-562 | 390.4 | ![]() |
Leukemia_promyelocytic-HL-60 | 599.4 | ![]() |
Leukemialymphoblastic(MOLT-4) | 668.5 | ![]() |
Liver | 91.45 | ![]() |
Lung | 138.35 | ![]() |
Lymphnode | 257.45 | ![]() |
Lymphoma_burkitts(Daudi) | 787.35 | ![]() |
Lymphoma_burkitts(Raji) | 142.55 | ![]() |
MedullaOblongata | 44.5 | ![]() |
OccipitalLobe | 73.05 | ![]() |
OlfactoryBulb | 142.55 | ![]() |
Ovary | 93.9 | ![]() |
Pancreas | 129.5 | ![]() |
PancreaticIslet | 223.55 | ![]() |
ParietalLobe | 25.45 | ![]() |
Pituitary | 231.55 | ![]() |
Placenta | 248.55 | ![]() |
Pons | 16.05 | ![]() |
PrefrontalCortex | 68.45 | ![]() |
Prostate | 137.25 | ![]() |
Salivarygland | 117.7 | ![]() |
SkeletalMuscle | 64.25 | ![]() |
Skin | 59.45 | ![]() |
SmoothMuscle | 726.6 | ![]() |
Spinalcord | 125.9 | ![]() |
SubthalamicNucleus | 15.65 | ![]() |
SuperiorCervicalGanglion | 32.1 | ![]() |
TemporalLobe | 18.4 | ![]() |
Testis | 236.35 | ![]() |
TestisGermCell | 266.45 | ![]() |
TestisIntersitial | 128.85 | ![]() |
TestisLeydigCell | 138.2 | ![]() |
TestisSeminiferousTubule | 157.1 | ![]() |
Thalamus | 111.65 | ![]() |
Thymus | 410.75 | ![]() |
Thyroid | 331.45 | ![]() |
Tongue | 179.1 | ![]() |
Tonsil | 335.3 | ![]() |
Trachea | 134.6 | ![]() |
TrigeminalGanglion | 15.95 | ![]() |
Uterus | 126.5 | ![]() |
UterusCorpus | 36.2 | ![]() |
WholeBlood | 364.65 | ![]() |
Wholebrain | 49.15 | ![]() |
colon | 378.45 | ![]() |
pineal_day | 513.58 | ![]() |
pineal_night | 468.88 | ![]() |
retina | 212.5 | ![]() |
small_intestine | 506.65 | ![]() |
- Probe name: CUST_15337_PI416261804
- Donor H0351.2001
- Sex: Male Age: 24 years Race/Ethnicity: African American Handedness: Left
- Tissue Receipt Date: 7/29/2009 Serology: Pass Tissue pH :6.72 Additional Medical Information :History of asthma
- Postmortem Interval: 23 hours (estimated time of death to time that tissue is frozen)
- Toxicology: Positive for atropine and caffeine, at levels usually not toxicologically significant
Tissue | Expression(mean ± stddev) | Expression Bar |
---|---|---|
Amygdala | 7.77 ± 0.29 | ![]() ![]() ![]() |
Basal Forebrain | 7.49 ± 0.25 | ![]() ![]() ![]() |
Basal Part of Pons | 7.51 ± 0.15 | ![]() ![]() ![]() |
Cerebellar Cortex | 7.57 ± 0.25 | ![]() ![]() ![]() |
Cerebellar Nuclei | 7.61 ± 0.35 | ![]() ![]() ![]() |
Claustrum | 7.73 ± 0.35 | ![]() ![]() ![]() |
Epithalamus | 7.64 ± 0.3 | ![]() ![]() ![]() |
Frontal Lobe | 7.5 ± 0.26 | ![]() ![]() ![]() |
Globus Pallidus | 7.77 ± 0.16 | ![]() ![]() ![]() |
Hypothalamus | 7.75 ± 0.18 | ![]() ![]() ![]() |
Insula | 7.53 ± 0.19 | ![]() ![]() ![]() |
Limbic Lobe | 7.52 ± 0.23 | ![]() ![]() ![]() |
Mesencephalon | 7.56 ± 0.26 | ![]() ![]() ![]() |
Myelencephalon | 7.56 ± 0.25 | ![]() ![]() ![]() |
Occipital Lobe | 7.54 ± 0.26 | ![]() ![]() ![]() |
Parietal Lobe | 7.53 ± 0.26 | ![]() ![]() ![]() |
Pontine Tegmentum | 7.61 ± 0.31 | ![]() ![]() ![]() |
Striatum | 7.49 ± 0.24 | ![]() ![]() ![]() |
Subthalamus | 7.57 ± 0.03 | ![]() ![]() ![]() |
Temporal Lobe | 7.6 ± 0.24 | ![]() ![]() ![]() |
Thalamus | 7.5 ± 0.19 | ![]() ![]() ![]() |
White Matter | 8.12 ± 0.05 | ![]() ![]() ![]() |
Gene Symbol | Brain Structure ID | Brain Structure Name | Express Desity/Level (Meatured by ISH) | Express Bar |
---|---|---|---|---|
Snrpd3 | CB | Cerebellum | 9.32 | ![]() |
10.54 | ![]() | |||
Snrpd3 | CTX | Cerebral cortex | 19.73 | ![]() |
15.57 | ![]() | |||
Snrpd3 | HIP | Hippocampal region | 15.29 | ![]() |
16.25 | ![]() | |||
Snrpd3 | HPF | Hippocampal formation | 14.61 | ![]() |
13.71 | ![]() | |||
Snrpd3 | HY | Hypothalamus | 3.19 | ![]() |
2.62 | ![]() | |||
Snrpd3 | LSX | Lateral septal complex | 7.48 | ![]() |
5.33 | ![]() | |||
Snrpd3 | MB | Midbrain | 7.53 | ![]() |
7.37 | ![]() | |||
Snrpd3 | MY | Medulla | 12.95 | ![]() |
15.83 | ![]() | |||
Snrpd3 | OLF | Olfactory bulb | 11.25 | ![]() |
8.91 | ![]() | |||
Snrpd3 | P | Pons | 9.52 | ![]() |
10.63 | ![]() | |||
Snrpd3 | PAL | Pallidum | 2.81 | ![]() |
2.62 | ![]() | |||
Snrpd3 | RHP | Retrohippocampal region | 13.42 | ![]() |
10.12 | ![]() | |||
Snrpd3 | sAMY | Striatum-like amygdalar nuclei | 4.14 | ![]() |
3.54 | ![]() | |||
Snrpd3 | STR | Striatum | 4.11 | ![]() |
3.3 | ![]() | |||
Snrpd3 | STRd | Striatum dorsal region | 3 | ![]() |
2.67 | ![]() | |||
Snrpd3 | STRv | Striatum ventral region | 6.12 | ![]() |
4.05 | ![]() | |||
Snrpd3 | TH | Thalamus | 9.21 | ![]() |
9.61 | ![]() |
Peptide Name | Peptide Lengh | Peptide Start | Peptide End | Peptide Sequence | Source |
---|---|---|---|---|---|
PAp00002489 | 9 | 70 | 78 | FLILPDMLK | Peptide Atlas |
SMD3_HUMAN_2 | 15 | 2 | 16 | SIGVPIKVLHEAEGH | PRIDE |
SMD3_HUMAN_2 | 28 | 2 | 29 | SIGVPIKVLHEAEGHIVTCETNTGEVYR | PRIDE |
SMD3_HUMAN_54 | 10 | 54 | 63 | VAQLEQVYIR | PRIDE |
SMD3_HUMAN_70 | 9 | 70 | 78 | FLILPDMLK | PRIDE |
SMD3_HUMAN_8 | 21 | 8 | 28 | VLHEAEGHIVTCETNTGEVYR | PRIDE |