AutismKB 2.0

Annotation Detail for SNRPG


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Basic Information Top
Gene Symbol:SNRPG ( MGC117317,SMG,Sm-G )
Gene Full Name: small nuclear ribonucleoprotein polypeptide G
Band: 2p13.3
Quick LinksEntrez ID:6637; OMIM: 603542; Uniprot ID:RUXG_HUMAN; ENSEMBL ID: ENSG00000143977; HGNC ID: 11163
Relate to Another Database: SFARIGene; denovo-db
Unigene EST Top
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
embryoid body0 / 707610 
blastocyst1 / 6231916
fetus4 / 5640127
neonate0 / 310970 
infant0 / 236200 
juvenile0 / 555560 
adult9 / 19391214
embryoid body0 / 707610 
blastocyst1 / 6231916
fetus17 / 56401230
neonate0 / 310970 
infant0 / 236200 
juvenile0 / 555560 
adult36 / 193912118
embryoid body4 / 7076156
blastocyst1 / 6231916
fetus13 / 56401223
neonate1 / 3109732
infant0 / 236200 
juvenile0 / 555560 
adult71 / 193912136
embryoid body2 / 7076128
blastocyst1 / 6231916
fetus1 / 5640121
neonate0 / 310970 
infant0 / 236200 
juvenile0 / 555560 
adult10 / 19391215
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
adrenal tumor1 / 1279478
bladder carcinoma1 / 1747557
breast (mammary gland) tumor0 / 941780 
cervical tumor0 / 343660 
chondrosarcoma0 / 828230 
colorectal tumor1 / 1142468
esophageal tumor0 / 172900 
gastrointestinal tumor3 / 11936925
germ cell tumor1 / 2638453
glioma1 / 1068839
head and neck tumor0 / 1363020 
kidney tumor0 / 689590 
leukemia0 / 958420 
liver tumor2 / 9635920
lung tumor0 / 1031270 
lymphoma0 / 717550 
non-neoplasia0 / 972500 
normal40 / 336030711
ovarian tumor1 / 7668213
pancreatic tumor1 / 1046169
primitive neuroectodermal tumor of the CNS0 / 1256800 
prostate cancer1 / 1026809
retinoblastoma0 / 463560 
skin tumor0 / 1249490 
soft tissue/muscle tissue tumor1 / 1251917
uterine tumor0 / 902570 
adrenal tumor0 / 127940 
bladder carcinoma1 / 1747557
breast (mammary gland) tumor1 / 9417810
cervical tumor0 / 343660 
chondrosarcoma1 / 8282312
colorectal tumor2 / 11424617
esophageal tumor0 / 172900 
gastrointestinal tumor2 / 11936916
germ cell tumor5 / 26384518
glioma8 / 10688374
head and neck tumor2 / 13630214
kidney tumor2 / 6895929
leukemia5 / 9584252
liver tumor4 / 9635941
lung tumor1 / 1031279
lymphoma0 / 717550 
non-neoplasia2 / 9725020
normal90 / 336030726
ovarian tumor6 / 7668278
pancreatic tumor1 / 1046169
primitive neuroectodermal tumor of the CNS0 / 1256800 
prostate cancer3 / 10268029
retinoblastoma0 / 463560 
skin tumor3 / 12494924
soft tissue/muscle tissue tumor0 / 1251910 
uterine tumor0 / 902570 
adrenal tumor1 / 1279478
bladder carcinoma1 / 1747557
breast (mammary gland) tumor2 / 9417821
cervical tumor0 / 343660 
chondrosarcoma0 / 828230 
colorectal tumor7 / 11424661
esophageal tumor1 / 1729057
gastrointestinal tumor6 / 11936950
germ cell tumor5 / 26384518
glioma5 / 10688346
head and neck tumor2 / 13630214
kidney tumor1 / 6895914
leukemia2 / 9584220
liver tumor17 / 96359176
lung tumor1 / 1031279
lymphoma0 / 717550 
non-neoplasia2 / 9725020
normal146 / 336030743
ovarian tumor6 / 7668278
pancreatic tumor1 / 1046169
primitive neuroectodermal tumor of the CNS2 / 12568015
prostate cancer2 / 10268019
retinoblastoma1 / 4635621
skin tumor4 / 12494932
soft tissue/muscle tissue tumor3 / 12519123
uterine tumor1 / 9025711
adrenal tumor0 / 127940 
bladder carcinoma0 / 174750 
breast (mammary gland) tumor0 / 941780 
cervical tumor0 / 343660 
chondrosarcoma0 / 828230 
colorectal tumor0 / 1142460 
esophageal tumor0 / 172900 
gastrointestinal tumor0 / 1193690 
germ cell tumor0 / 2638450 
glioma1 / 1068839
head and neck tumor0 / 1363020 
kidney tumor0 / 689590 
leukemia0 / 958420 
liver tumor1 / 9635910
lung tumor0 / 1031270 
lymphoma0 / 717550 
non-neoplasia0 / 972500 
normal21 / 33603076
ovarian tumor2 / 7668226
pancreatic tumor0 / 1046160 
primitive neuroectodermal tumor of the CNS0 / 1256800 
prostate cancer0 / 1026800 
retinoblastoma0 / 463560 
skin tumor1 / 1249498
soft tissue/muscle tissue tumor0 / 1251910 
uterine tumor0 / 902570 
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
adipose tissue0 / 131060 
adrenal gland2 / 3319760
ascites1 / 4001524
bladder1 / 2975733
blood1 / 1234788
bone1 / 7165513
bone marrow1 / 4880120
brain3 / 11009892
cervix0 / 481710 
connective tissue0 / 1492550 
ear0 / 162120 
embryonic tissue4 / 21572218
esophagus0 / 202090 
eye1 / 2110544
heart1 / 8962611
intestine2 / 2344728
kidney1 / 2117774
larynx0 / 241450 
liver7 / 20774333
lung1 / 3369742
lymph0 / 442700 
lymph node1 / 9161010
mammary gland0 / 1532710 
mouth0 / 670520 
muscle0 / 1077150 
nerve0 / 157680 
ovary1 / 1020519
pancreas2 / 2148129
parathyroid0 / 205390 
pharynx0 / 413280 
pituitary gland2 / 16585120
placenta0 / 2808250 
prostate2 / 18934510
salivary gland0 / 201550 
skin0 / 2105740 
spleen0 / 539520 
stomach1 / 9661910
testis2 / 3304426
thymus0 / 811310 
thyroid0 / 474730 
tonsil0 / 169990 
trachea0 / 524130 
umbilical cord0 / 136800 
uterus2 / 2328788
vascular1 / 5178019
adipose tissue0 / 131060 
adrenal gland0 / 331970 
ascites1 / 4001524
bladder4 / 29757134
blood6 / 12347848
bone0 / 716550 
bone marrow3 / 4880161
brain20 / 110098918
cervix0 / 481710 
connective tissue2 / 14925513
ear1 / 1621261
embryonic tissue2 / 2157229
esophagus0 / 202090 
eye5 / 21105423
heart4 / 8962644
intestine4 / 23447217
kidney11 / 21177751
larynx0 / 241450 
liver22 / 207743105
lung5 / 33697414
lymph0 / 442700 
lymph node1 / 9161010
mammary gland4 / 15327126
mouth4 / 6705259
muscle0 / 1077150 
nerve0 / 157680 
ovary6 / 10205158
pancreas1 / 2148124
parathyroid0 / 205390 
pharynx1 / 4132824
pituitary gland1 / 1658560
placenta2 / 2808257
prostate5 / 18934526
salivary gland1 / 2015549
skin3 / 21057414
spleen0 / 539520 
stomach1 / 9661910
testis3 / 3304429
thymus0 / 811310 
thyroid1 / 4747321
tonsil0 / 169990 
trachea0 / 524130 
umbilical cord0 / 136800 
uterus3 / 23287812
vascular1 / 5178019
adipose tissue0 / 131060 
adrenal gland3 / 3319790
ascites2 / 4001549
bladder1 / 2975733
blood9 / 12347872
bone1 / 7165513
bone marrow7 / 48801143
brain18 / 110098916
cervix0 / 481710 
connective tissue1 / 1492556
ear0 / 162120 
embryonic tissue12 / 21572255
esophagus1 / 2020949
eye5 / 21105423
heart2 / 8962622
intestine12 / 23447251
kidney4 / 21177718
larynx0 / 241450 
liver20 / 20774396
lung2 / 3369745
lymph0 / 442700 
lymph node3 / 9161032
mammary gland3 / 15327119
mouth2 / 6705229
muscle1 / 1077159
nerve0 / 157680 
ovary7 / 10205168
pancreas1 / 2148124
parathyroid0 / 205390 
pharynx1 / 4132824
pituitary gland2 / 16585120
placenta8 / 28082528
prostate6 / 18934531
salivary gland1 / 2015549
skin5 / 21057423
spleen2 / 5395237
stomach1 / 9661910
testis6 / 33044218
thymus0 / 811310 
thyroid0 / 474730 
tonsil0 / 169990 
trachea0 / 524130 
umbilical cord1 / 1368073
uterus7 / 23287830
vascular3 / 5178057
adipose tissue0 / 131060 
adrenal gland0 / 331970 
ascites0 / 400150 
bladder0 / 297570 
blood4 / 12347832
bone0 / 716550 
bone marrow1 / 4880120
brain1 / 11009890 
cervix0 / 481710 
connective tissue0 / 1492550 
ear0 / 162120 
embryonic tissue5 / 21572223
esophagus0 / 202090 
eye2 / 2110549
heart0 / 896260 
intestine0 / 2344720 
kidney0 / 2117770 
larynx0 / 241450 
liver4 / 20774319
lung0 / 3369740 
lymph0 / 442700 
lymph node0 / 916100 
mammary gland0 / 1532710 
mouth0 / 670520 
muscle0 / 1077150 
nerve0 / 157680 
ovary2 / 10205119
pancreas0 / 2148120 
parathyroid0 / 205390 
pharynx0 / 413280 
pituitary gland0 / 165850 
placenta1 / 2808253
prostate0 / 1893450 
salivary gland0 / 201550 
skin2 / 2105749
spleen0 / 539520 
stomach1 / 9661910
testis0 / 3304420 
thymus0 / 811310 
thyroid0 / 474730 
tonsil0 / 169990 
trachea0 / 524130 
umbilical cord0 / 136800 
uterus3 / 23287812
vascular0 / 517800 
Microarray in BioGPS Top
Select probe  
  • Microarray Platform: GeneAtlas U133A, gcrma
  • Affymatrix Probe ID: 205644_s_at
Cell line Expression level Expression bar
721_B_lymphoblasts2938.4
Adipocyte327
AdrenalCortex259.75
Adrenalgland271
Amygdala93.05
Appendix102.65
AtrioventricularNode81.7
BDCA4+_DentriticCells796.05
Bonemarrow296.45
BronchialEpithelialCells1837.7
CD105+_Endothelial1974.6
CD14+_Monocytes743.65
CD19+_BCells(neg._sel.)610.35
CD33+_Myeloid678.7
CD34+1380.55
CD4+_Tcells591.45
CD56+_NKCells564.3
CD71+_EarlyErythroid895.25
CD8+_Tcells653.35
CardiacMyocytes581.8
Caudatenucleus109.15
Cerebellum147.7
CerebellumPeduncles168.55
CiliaryGanglion59.7
CingulateCortex69.05
Colorectaladenocarcinoma918.9
DorsalRootGanglion47.8
FetalThyroid263
Fetalbrain143.55
Fetalliver296.1
Fetallung344.7
GlobusPallidus37.95
Heart273.05
Hypothalamus253.45
Kidney194.1
Leukemia_chronicMyelogenousK-5621355.95
Leukemia_promyelocytic-HL-601181.95
Leukemialymphoblastic(MOLT-4)1023.05
Liver164.2
Lung335.35
Lymphnode331.75
Lymphoma_burkitts(Daudi)1139.35
Lymphoma_burkitts(Raji)405.85
MedullaOblongata81.85
OccipitalLobe134.65
OlfactoryBulb202.8
Ovary112.35
Pancreas314.85
PancreaticIslet404
ParietalLobe87.95
Pituitary285.1
Placenta433.6
Pons38.95
PrefrontalCortex150.95
Prostate417.8
Salivarygland202.5
SkeletalMuscle77.65
Skin76.5
SmoothMuscle918.2
Spinalcord204.55
SubthalamicNucleus47.9
SuperiorCervicalGanglion83.1
TemporalLobe109.6
Testis304
TestisGermCell313.8
TestisIntersitial331
TestisLeydigCell169.6
TestisSeminiferousTubule257.75
Thalamus121.35
Thymus660.25
Thyroid433.7
Tongue164.8
Tonsil465.5
Trachea170.75
TrigeminalGanglion51.6
Uterus244.25
UterusCorpus113.65
WholeBlood614.35
Wholebrain202.5
colon549
pineal_day957.94
pineal_night914.84
retina373.075
small_intestine528.4
Allen Brain Atlas Top
Human Whole Brain Microarrayview in Allen Brain Atlas
  • Probe id     Donor id      
  • Probe name: A_23_P102235
  • Donor H0351.2001
  • Sex: Male     Age: 24 years     Race/Ethnicity: African American     Handedness: Left
  • Tissue Receipt Date: 7/29/2009     Serology: Pass      Tissue pH :6.72     Additional Medical Information :History of asthma
  • Postmortem Interval: 23 hours (estimated time of death to time that tissue is frozen)
  • Toxicology: Positive for atropine and caffeine, at levels usually not toxicologically significant
Tissue Expression(mean ± stddev) Expression Bar
Amygdala8.22 ± 0.34
Basal Forebrain8.29 ± 0.23
Basal Part of Pons8.33 ± 0.34
Cerebellar Cortex8.49 ± 0.35
Cerebellar Nuclei8.65 ± 0.33
Claustrum7.74 ± 0.62
Epithalamus8.71 ± 0.4
Frontal Lobe8.46 ± 0.33
Globus Pallidus8.98 ± 0.24
Hypothalamus8.63 ± 0.2
Insula8.48 ± 0.34
Limbic Lobe8.06 ± 0.51
Mesencephalon8.31 ± 0.44
Myelencephalon8.3 ± 0.38
Occipital Lobe7.89 ± 0.41
Parietal Lobe8.32 ± 0.35
Pontine Tegmentum8.45 ± 0.34
Striatum8.37 ± 0.37
Subthalamus8.7 ± 0.24
Temporal Lobe8.31 ± 0.31
Thalamus8.37 ± 0.3
White Matter8.91 ± 0.6
Mouse Brain ISH
Gene Symbol Brain Structure ID Brain Structure Name Express Desity/Level (Meatured by ISH) Express Bar
SnrpgCBCerebellum7.55
9.05
SnrpgCTXCerebral cortex20.31
16.05
SnrpgHIPHippocampal region22.22
23.36
SnrpgHPFHippocampal formation23.74
23.23
SnrpgHYHypothalamus11.19
9.91
SnrpgLSXLateral septal complex3.07
2.26
SnrpgMBMidbrain4.22
4.52
SnrpgMYMedulla12.29
17.53
SnrpgOLFOlfactory bulb36.34
33.55
SnrpgPPons12.01
18.36
SnrpgPALPallidum10.46
10.24
SnrpgRHPRetrohippocampal region26.95
23.66
SnrpgsAMYStriatum-like amygdalar nuclei20.49
16.42
SnrpgSTRStriatum17.99
14.42
SnrpgSTRdStriatum dorsal region14.73
11.68
SnrpgSTRvStriatum ventral region34.07
25.97
SnrpgTHThalamus11.28
10.25
Peptide Top
Peptide Name Peptide Lengh Peptide Start Peptide End Peptide Sequence Source
PAp00025812 7 26 32 HVQGILR Peptide Atlas
RUXG_HUMAN_63 13 63 75 GNSIIMLEALERV PRIDE
RUXG_HUMAN_64 12 64 75 GNSIIMLEALER PRIDE

Simple Query:


  (e.g. CHD8)

Syndromic Genes

Non-syndromic Genes

AutismKB Statistics

  • Studies: 1,036
  • Genes: 1,379
  • CNVs/SVs: 5,420
  • SNVs/Indels: 11,669
  • de novo Mutations: 5,669
  • Mosaics: 789
  • Linkage Regions: 172
  • Paper Collected: 6/30/2018
  • Last Update: 8/26/2018