AutismKB 2.0

Annotation Detail for SP100


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Basic Information Top
Gene Symbol:SP100 ( DKFZp686E07254,FLJ00340,FLJ34579 )
Gene Full Name: SP100 nuclear antigen
Band: 2q37.1
Quick LinksEntrez ID:6672; OMIM: 604585; Uniprot ID:SP100_HUMAN; ENSEMBL ID: ENSG00000067066; HGNC ID: 11206
Relate to Another Database: SFARIGene; denovo-db
Unigene EST Top
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
embryoid body3 / 7076142
blastocyst1 / 6231916
fetus41 / 56401272
neonate3 / 3109796
infant0 / 236200 
juvenile5 / 5555689
adult143 / 193912173
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
adrenal tumor0 / 127940 
bladder carcinoma1 / 1747557
breast (mammary gland) tumor12 / 94178127
cervical tumor3 / 3436687
chondrosarcoma10 / 82823120
colorectal tumor9 / 11424678
esophageal tumor2 / 17290115
gastrointestinal tumor8 / 11936967
germ cell tumor5 / 26384518
glioma0 / 1068830 
head and neck tumor6 / 13630244
kidney tumor4 / 6895958
leukemia11 / 95842114
liver tumor7 / 9635972
lung tumor5 / 10312748
lymphoma2 / 7175527
non-neoplasia4 / 9725041
normal219 / 336030765
ovarian tumor1 / 7668213
pancreatic tumor8 / 10461676
primitive neuroectodermal tumor of the CNS3 / 12568023
prostate cancer3 / 10268029
retinoblastoma0 / 463560 
skin tumor12 / 12494996
soft tissue/muscle tissue tumor12 / 12519195
uterine tumor9 / 9025799
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
adipose tissue1 / 1310676
adrenal gland1 / 3319730
ascites1 / 4001524
bladder12 / 29757403
blood16 / 123478129
bone5 / 7165569
bone marrow4 / 4880181
brain17 / 110098915
cervix7 / 48171145
connective tissue12 / 14925580
ear0 / 162120 
embryonic tissue4 / 21572218
esophagus2 / 2020998
eye11 / 21105452
heart5 / 8962655
intestine20 / 23447285
kidney22 / 211777103
larynx0 / 241450 
liver11 / 20774352
lung29 / 33697486
lymph0 / 442700 
lymph node17 / 91610185
mammary gland17 / 153271110
mouth3 / 6705244
muscle0 / 1077150 
nerve0 / 157680 
ovary3 / 10205129
pancreas14 / 21481265
parathyroid0 / 205390 
pharynx7 / 41328169
pituitary gland2 / 16585120
placenta19 / 28082567
prostate8 / 18934542
salivary gland1 / 2015549
skin22 / 210574104
spleen7 / 53952129
stomach14 / 96619144
testis3 / 3304429
thymus4 / 8113149
thyroid2 / 4747342
tonsil0 / 169990 
trachea4 / 5241376
umbilical cord0 / 136800 
uterus25 / 232878107
vascular7 / 51780135
Microarray in BioGPS Top
Select probe  
  • Microarray Platform: GeneAtlas U133A, gcrma
  • Affymatrix Probe ID: 202864_s_at
Cell line Expression level Expression bar
721_B_lymphoblasts162.35
Adipocyte24.9
AdrenalCortex35.95
Adrenalgland13.85
Amygdala12.6
Appendix27.45
AtrioventricularNode19.7
BDCA4+_DentriticCells66.25
Bonemarrow17.15
BronchialEpithelialCells20.8
CD105+_Endothelial36.2
CD14+_Monocytes303.85
CD19+_BCells(neg._sel.)1025.9
CD33+_Myeloid43.65
CD34+73.5
CD4+_Tcells203.45
CD56+_NKCells385.95
CD71+_EarlyErythroid215.75
CD8+_Tcells393.5
CardiacMyocytes103.05
Caudatenucleus11.35
Cerebellum12.5
CerebellumPeduncles17.2
CiliaryGanglion14.05
CingulateCortex15.6
Colorectaladenocarcinoma14.6
DorsalRootGanglion14
FetalThyroid20.6
Fetalbrain12.7
Fetalliver13.85
Fetallung24.55
GlobusPallidus11.45
Heart33.35
Hypothalamus14.15
Kidney17.8
Leukemia_chronicMyelogenousK-56227.85
Leukemia_promyelocytic-HL-6032.35
Leukemialymphoblastic(MOLT-4)10.3
Liver17.25
Lung17.2
Lymphnode78.3
Lymphoma_burkitts(Daudi)46.45
Lymphoma_burkitts(Raji)104.7
MedullaOblongata11.8
OccipitalLobe12.9
OlfactoryBulb11.75
Ovary22.1
Pancreas22.55
PancreaticIslet20.8
ParietalLobe15.8
Pituitary19.9
Placenta17.95
Pons16.7
PrefrontalCortex15
Prostate21.4
Salivarygland27.4
SkeletalMuscle19.25
Skin11.85
SmoothMuscle166.25
Spinalcord16.45
SubthalamicNucleus13.95
SuperiorCervicalGanglion19
TemporalLobe13.6
Testis12.2
TestisGermCell11.3
TestisIntersitial11.5
TestisLeydigCell15.25
TestisSeminiferousTubule12.5
Thalamus15.95
Thymus38
Thyroid26.05
Tongue21.25
Tonsil81.85
Trachea30.35
TrigeminalGanglion36.3
Uterus29.95
UterusCorpus14.75
WholeBlood181.4
Wholebrain9.8
colon31.4
pineal_day15.54
pineal_night15.64
retina18.65
small_intestine33.65
Allen Brain Atlas Top
Human Whole Brain Microarrayview in Allen Brain Atlas
  • Probe id     Donor id      
  • Probe name: A_23_P349928
  • Donor H0351.2001
  • Sex: Male     Age: 24 years     Race/Ethnicity: African American     Handedness: Left
  • Tissue Receipt Date: 7/29/2009     Serology: Pass      Tissue pH :6.72     Additional Medical Information :History of asthma
  • Postmortem Interval: 23 hours (estimated time of death to time that tissue is frozen)
  • Toxicology: Positive for atropine and caffeine, at levels usually not toxicologically significant
Tissue Expression(mean ± stddev) Expression Bar
Amygdala12.09 ± 0.25
Basal Forebrain12.09 ± 0.19
Basal Part of Pons11.79 ± 0.24
Cerebellar Cortex12.11 ± 0.13
Cerebellar Nuclei12.12 ± 0.17
Claustrum12.16 ± 0.19
Epithalamus12.36 ± 0.29
Frontal Lobe12.02 ± 0.27
Globus Pallidus12.59 ± 0.21
Hypothalamus12.16 ± 0.23
Insula12.14 ± 0.27
Limbic Lobe11.9 ± 0.26
Mesencephalon12.11 ± 0.22
Myelencephalon12.04 ± 0.27
Occipital Lobe11.99 ± 0.24
Parietal Lobe12.01 ± 0.2
Pontine Tegmentum12.12 ± 0.2
Striatum11.95 ± 0.2
Subthalamus12.13 ± 0.17
Temporal Lobe12.03 ± 0.23
Thalamus12.08 ± 0.21
White Matter12.89 ± 0.32
Mouse Brain ISH
Gene Symbol Brain Structure ID Brain Structure Name Express Desity/Level (Meatured by ISH) Express Bar
Sp100CBCerebellum0.38
0.83
Sp100CTXCerebral cortex0.26
0.44
Sp100HIPHippocampal region0.24
0.94
Sp100HPFHippocampal formation0.23
0.73
Sp100HYHypothalamus0.11
0.15
Sp100LSXLateral septal complex0.27
0.4
Sp100MBMidbrain0.21
0.42
Sp100MYMedulla0.38
0.56
Sp100OLFOlfactory bulb0.38
0.86
Sp100PPons0.18
0.21
Sp100PALPallidum0.1
0.11
Sp100RHPRetrohippocampal region0.18
0.27
Sp100sAMYStriatum-like amygdalar nuclei0.26
0.62
Sp100STRStriatum0.16
0.21
Sp100STRdStriatum dorsal region0.13
0.16
Sp100STRvStriatum ventral region0.19
0.18
Sp100THThalamus0.11
0.14
Peptide Top
Peptide Name Peptide Lengh Peptide Start Peptide End Peptide Sequence Source
PAp00002481 10 777 786 FLFCSEYRPK Peptide Atlas

Simple Query:


  (e.g. CHD8)

Syndromic Genes

Non-syndromic Genes

AutismKB Statistics

  • Studies: 1,036
  • Genes: 1,379
  • CNVs/SVs: 5,420
  • SNVs/Indels: 11,669
  • de novo Mutations: 5,669
  • Mosaics: 789
  • Linkage Regions: 172
  • Paper Collected: 6/30/2018
  • Last Update: 8/26/2018


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