AutismKB 2.0

Annotation Detail for SSRP1


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Basic Information Top
Gene Symbol:SSRP1 ( FACT,FACT80,T160 )
Gene Full Name: structure specific recognition protein 1
Band: 11q12.1
Quick LinksEntrez ID:6749; OMIM: 604328; Uniprot ID:SSRP1_HUMAN; ENSEMBL ID: ENSG00000149136; HGNC ID: 11327
Relate to Another Database: SFARIGene; denovo-db
Unigene EST Top
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
embryoid body20 / 70761282
blastocyst23 / 62319369
fetus39 / 56401269
neonate2 / 3109764
infant1 / 2362042
juvenile15 / 55556269
adult212 / 1939121109
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
adrenal tumor1 / 1279478
bladder carcinoma0 / 174750 
breast (mammary gland) tumor19 / 94178201
cervical tumor17 / 34366494
chondrosarcoma12 / 82823144
colorectal tumor18 / 114246157
esophageal tumor1 / 1729057
gastrointestinal tumor29 / 119369242
germ cell tumor38 / 263845144
glioma16 / 106883149
head and neck tumor10 / 13630273
kidney tumor6 / 6895987
leukemia16 / 95842166
liver tumor7 / 9635972
lung tumor28 / 103127271
lymphoma21 / 71755292
non-neoplasia6 / 9725061
normal250 / 336030774
ovarian tumor15 / 76682195
pancreatic tumor26 / 104616248
primitive neuroectodermal tumor of the CNS22 / 125680175
prostate cancer9 / 10268087
retinoblastoma25 / 46356539
skin tumor19 / 124949152
soft tissue/muscle tissue tumor27 / 125191215
uterine tumor9 / 9025799
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
adipose tissue1 / 1310676
adrenal gland3 / 3319790
ascites12 / 40015299
bladder1 / 2975733
blood22 / 123478178
bone12 / 71655167
bone marrow0 / 488010 
brain60 / 110098954
cervix17 / 48171352
connective tissue5 / 14925533
ear0 / 162120 
embryonic tissue61 / 215722282
esophagus1 / 2020949
eye42 / 211054199
heart4 / 8962644
intestine34 / 234472145
kidney14 / 21177766
larynx3 / 24145124
liver14 / 20774367
lung44 / 336974130
lymph15 / 44270338
lymph node10 / 91610109
mammary gland20 / 153271130
mouth5 / 6705274
muscle11 / 107715102
nerve0 / 157680 
ovary20 / 102051195
pancreas28 / 214812130
parathyroid1 / 2053948
pharynx0 / 413280 
pituitary gland0 / 165850 
placenta30 / 280825106
prostate19 / 189345100
salivary gland2 / 2015599
skin23 / 210574109
spleen0 / 539520 
stomach10 / 96619103
testis34 / 330442102
thymus1 / 8113112
thyroid0 / 474730 
tonsil5 / 16999294
trachea0 / 524130 
umbilical cord2 / 13680146
uterus27 / 232878115
vascular2 / 5178038
Microarray in BioGPS Top
Select probe  
  • Microarray Platform: GeneAtlas U133A, gcrma
  • Affymatrix Probe ID: 200956_s_at
Cell line Expression level Expression bar
721_B_lymphoblasts887.6
Adipocyte27.55
AdrenalCortex22.65
Adrenalgland12.6
Amygdala19.35
Appendix18.9
AtrioventricularNode17.3
BDCA4+_DentriticCells241.45
Bonemarrow18.75
BronchialEpithelialCells124.7
CD105+_Endothelial267.45
CD14+_Monocytes56.75
CD19+_BCells(neg._sel.)108.9
CD33+_Myeloid89.55
CD34+282.45
CD4+_Tcells154
CD56+_NKCells125.75
CD71+_EarlyErythroid146.95
CD8+_Tcells112.2
CardiacMyocytes90.65
Caudatenucleus17.25
Cerebellum24.8
CerebellumPeduncles31.1
CiliaryGanglion12.6
CingulateCortex18.75
Colorectaladenocarcinoma225.55
DorsalRootGanglion26.45
FetalThyroid18.55
Fetalbrain42.45
Fetalliver28.95
Fetallung54.2
GlobusPallidus18.35
Heart21.4
Hypothalamus19.85
Kidney13.55
Leukemia_chronicMyelogenousK-562111.2
Leukemia_promyelocytic-HL-60130.8
Leukemialymphoblastic(MOLT-4)297.95
Liver23.4
Lung29.05
Lymphnode17.85
Lymphoma_burkitts(Daudi)206.25
Lymphoma_burkitts(Raji)51.6
MedullaOblongata19.55
OccipitalLobe15.75
OlfactoryBulb17.85
Ovary37
Pancreas20.85
PancreaticIslet24.5
ParietalLobe18.7
Pituitary36
Placenta77.7
Pons17.7
PrefrontalCortex37.2
Prostate19.95
Salivarygland14.9
SkeletalMuscle20.5
Skin14
SmoothMuscle96.65
Spinalcord25.35
SubthalamicNucleus23.45
SuperiorCervicalGanglion21.45
TemporalLobe15.8
Testis36.45
TestisGermCell58.2
TestisIntersitial57.1
TestisLeydigCell24.65
TestisSeminiferousTubule35
Thalamus16.7
Thymus85.9
Thyroid36.9
Tongue18.45
Tonsil48
Trachea16.05
TrigeminalGanglion17.85
Uterus20.95
UterusCorpus22.4
WholeBlood17.55
Wholebrain15.6
colon44.45
pineal_day37.68
pineal_night30.82
retina29.375
small_intestine42.65
Allen Brain Atlas Top
Human Whole Brain Microarrayview in Allen Brain Atlas
  • Probe id     Donor id      
  • Probe name: CUST_10221_PI416261804
  • Donor H0351.2001
  • Sex: Male     Age: 24 years     Race/Ethnicity: African American     Handedness: Left
  • Tissue Receipt Date: 7/29/2009     Serology: Pass      Tissue pH :6.72     Additional Medical Information :History of asthma
  • Postmortem Interval: 23 hours (estimated time of death to time that tissue is frozen)
  • Toxicology: Positive for atropine and caffeine, at levels usually not toxicologically significant
Tissue Expression(mean ± stddev) Expression Bar
Amygdala9.09 ± 0.38
Basal Forebrain8.75 ± 0.26
Basal Part of Pons8.78 ± 0.22
Cerebellar Cortex8.78 ± 0.29
Cerebellar Nuclei8.46 ± 0.29
Claustrum9.16 ± 0.49
Epithalamus8.86 ± 0.31
Frontal Lobe8.69 ± 0.37
Globus Pallidus8.89 ± 0.25
Hypothalamus8.34 ± 0.37
Insula8.81 ± 0.31
Limbic Lobe9.07 ± 0.38
Mesencephalon8.68 ± 0.26
Myelencephalon8.8 ± 0.36
Occipital Lobe9.02 ± 0.43
Parietal Lobe8.77 ± 0.4
Pontine Tegmentum8.76 ± 0.39
Striatum8.91 ± 0.42
Subthalamus8.56 ± 0.16
Temporal Lobe8.79 ± 0.3
Thalamus8.69 ± 0.28
White Matter8.91 ± 0.28
Mouse Brain ISH
Gene Symbol Brain Structure ID Brain Structure Name Express Desity/Level (Meatured by ISH) Express Bar
Ssrp1CBCerebellum40.12
66.98
Ssrp1CTXCerebral cortex100
97.63
Ssrp1HIPHippocampal region89.49
100
Ssrp1HPFHippocampal formation90.33
100
Ssrp1HYHypothalamus62.89
53.33
Ssrp1LSXLateral septal complex69.78
58.57
Ssrp1MBMidbrain63.46
61.74
Ssrp1MYMedulla51.76
58.88
Ssrp1OLFOlfactory bulb93.91
89.22
Ssrp1PPons52.01
56
Ssrp1PALPallidum57.89
55.46
Ssrp1RHPRetrohippocampal region88.49
84.26
Ssrp1sAMYStriatum-like amygdalar nuclei88.98
72.97
Ssrp1STRStriatum75.11
61.59
Ssrp1STRdStriatum dorsal region72.83
60.16
Ssrp1STRvStriatum ventral region77.68
60.25
Ssrp1THThalamus79.16
73.62
Peptide Top
Peptide Name Peptide Lengh Peptide Start Peptide End Peptide Sequence Source
PAp00000273 15 189 203 ADVIQATGDAICIFR Peptide Atlas
SSRP1_HUMAN_2 21 2 22 AETLEFNDVYQEVKGSMNDGR PRIDE

Simple Query:


  (e.g. CHD8)

Syndromic Genes

Non-syndromic Genes

AutismKB Statistics

  • Studies: 1,036
  • Genes: 1,379
  • CNVs/SVs: 5,420
  • SNVs/Indels: 11,669
  • de novo Mutations: 5,669
  • Mosaics: 789
  • Linkage Regions: 172
  • Paper Collected: 6/30/2018
  • Last Update: 8/26/2018


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