AutismKB 2.0

Annotation Detail for ZFP36L1


View Evidences View Variants View Annotations
Basic Information Top
Gene Symbol:ZFP36L1 ( BRF1,Berg36,ERF-1,ERF1,RNF162B,TIS11B,cMG1 )
Gene Full Name: zinc finger protein 36, C3H type-like 1
Band: 14q24.1
Quick LinksEntrez ID:677; OMIM: 601064; Uniprot ID:TISB_HUMAN; ENSEMBL ID: ENSG00000185650; HGNC ID: 1107
Relate to Another Database: SFARIGene; denovo-db
Unigene EST Top
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
embryoid body16 / 70761226
blastocyst6 / 6231996
fetus39 / 56401269
neonate6 / 31097192
infant1 / 2362042
juvenile5 / 5555689
adult177 / 193912191
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
adrenal tumor0 / 127940 
bladder carcinoma1 / 1747557
breast (mammary gland) tumor4 / 9417842
cervical tumor2 / 3436658
chondrosarcoma14 / 82823169
colorectal tumor3 / 11424626
esophageal tumor3 / 17290173
gastrointestinal tumor3 / 11936925
germ cell tumor18 / 26384568
glioma11 / 106883102
head and neck tumor16 / 136302117
kidney tumor2 / 6895929
leukemia6 / 9584262
liver tumor4 / 9635941
lung tumor8 / 10312777
lymphoma4 / 7175555
non-neoplasia8 / 9725082
normal462 / 3360307137
ovarian tumor6 / 7668278
pancreatic tumor7 / 10461666
primitive neuroectodermal tumor of the CNS3 / 12568023
prostate cancer2 / 10268019
retinoblastoma0 / 463560 
skin tumor5 / 12494940
soft tissue/muscle tissue tumor20 / 125191159
uterine tumor18 / 90257199
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
adipose tissue2 / 13106152
adrenal gland5 / 33197150
ascites0 / 400150 
bladder7 / 29757235
blood36 / 123478291
bone7 / 7165597
bone marrow1 / 4880120
brain120 / 1100989108
cervix5 / 48171103
connective tissue21 / 149255140
ear2 / 16212123
embryonic tissue37 / 215722171
esophagus3 / 20209148
eye27 / 211054127
heart5 / 8962655
intestine28 / 234472119
kidney22 / 211777103
larynx2 / 2414582
liver7 / 20774333
lung51 / 336974151
lymph0 / 442700 
lymph node9 / 9161098
mammary gland11 / 15327171
mouth18 / 67052268
muscle6 / 10771555
nerve5 / 15768317
ovary7 / 10205168
pancreas12 / 21481255
parathyroid6 / 20539292
pharynx0 / 413280 
pituitary gland1 / 1658560
placenta38 / 280825135
prostate17 / 18934589
salivary gland1 / 2015549
skin8 / 21057437
spleen11 / 53952203
stomach4 / 9661941
testis38 / 330442114
thymus15 / 81131184
thyroid10 / 47473210
tonsil2 / 16999117
trachea16 / 52413305
umbilical cord5 / 13680365
uterus92 / 232878395
vascular7 / 51780135
Microarray in BioGPS Top
Select probe  
  • Microarray Platform: GeneAtlas U133A, gcrma
  • Affymatrix Probe ID: 211965_at
Cell line Expression level Expression bar
721_B_lymphoblasts22.1
Adipocyte35.75
AdrenalCortex29.85
Adrenalgland22.35
Amygdala25.25
Appendix29.2
AtrioventricularNode22.75
BDCA4+_DentriticCells20.1
Bonemarrow24.85
BronchialEpithelialCells84.5
CD105+_Endothelial26.55
CD14+_Monocytes40.75
CD19+_BCells(neg._sel.)67.25
CD33+_Myeloid37.25
CD34+28.45
CD4+_Tcells22.15
CD56+_NKCells33.6
CD71+_EarlyErythroid18.05
CD8+_Tcells20.75
CardiacMyocytes32.35
Caudatenucleus23.15
Cerebellum18.85
CerebellumPeduncles27.95
CiliaryGanglion26.4
CingulateCortex22.7
Colorectaladenocarcinoma204.8
DorsalRootGanglion18.9
FetalThyroid53.9
Fetalbrain20
Fetalliver19.65
Fetallung103.2
GlobusPallidus16.5
Heart30.45
Hypothalamus25.9
Kidney28.35
Leukemia_chronicMyelogenousK-56219.1
Leukemia_promyelocytic-HL-6021.25
Leukemialymphoblastic(MOLT-4)16.15
Liver39.35
Lung108.2
Lymphnode37.1
Lymphoma_burkitts(Daudi)28
Lymphoma_burkitts(Raji)54.8
MedullaOblongata21.55
OccipitalLobe21.45
OlfactoryBulb35
Ovary168.8
Pancreas20.9
PancreaticIslet25.9
ParietalLobe21.55
Pituitary25.75
Placenta93.95
Pons22.4
PrefrontalCortex54.8
Prostate76.35
Salivarygland24.5
SkeletalMuscle36.1
Skin37.1
SmoothMuscle41.95
Spinalcord38.8
SubthalamicNucleus19.7
SuperiorCervicalGanglion34.2
TemporalLobe20.2
Testis14.45
TestisGermCell21.85
TestisIntersitial18.55
TestisLeydigCell25.05
TestisSeminiferousTubule20.15
Thalamus23.7
Thymus19.45
Thyroid58.75
Tongue35.7
Tonsil47.35
Trachea44.6
TrigeminalGanglion37.05
Uterus227.8
UterusCorpus24
WholeBlood127.2
Wholebrain18.15
colon38.6
pineal_day25.18
pineal_night25.18
retina37.75
small_intestine23.75
Allen Brain Atlas Top
Human Whole Brain Microarrayview in Allen Brain Atlas
  • Probe id     Donor id      
  • Probe name: A_24_P99152
  • Donor H0351.2001
  • Sex: Male     Age: 24 years     Race/Ethnicity: African American     Handedness: Left
  • Tissue Receipt Date: 7/29/2009     Serology: Pass      Tissue pH :6.72     Additional Medical Information :History of asthma
  • Postmortem Interval: 23 hours (estimated time of death to time that tissue is frozen)
  • Toxicology: Positive for atropine and caffeine, at levels usually not toxicologically significant
Tissue Expression(mean ± stddev) Expression Bar
Amygdala5.64 ± 0.5
Basal Forebrain5.53 ± 0.42
Basal Part of Pons5.54 ± 0.29
Cerebellar Cortex5.13 ± 0.35
Cerebellar Nuclei5.93 ± 0.51
Claustrum6 ± 0.71
Epithalamus6.23 ± 0.44
Frontal Lobe5.42 ± 0.56
Globus Pallidus6.65 ± 0.45
Hypothalamus5.54 ± 0.66
Insula5.25 ± 0.54
Limbic Lobe5.5 ± 0.67
Mesencephalon5.5 ± 0.54
Myelencephalon5.62 ± 0.56
Occipital Lobe5.49 ± 0.7
Parietal Lobe5.42 ± 0.54
Pontine Tegmentum5.36 ± 0.55
Striatum5.93 ± 0.51
Subthalamus5.29 ± 0.4
Temporal Lobe5.36 ± 0.51
Thalamus5.45 ± 0.46
White Matter6.61 ± 0.46
Mouse Brain ISH
Gene Symbol Brain Structure ID Brain Structure Name Express Desity/Level (Meatured by ISH) Express Bar
Zfp36l1CBCerebellum100
100
Zfp36l1CTXCerebral cortex100
100
Zfp36l1HIPHippocampal region100
100
Zfp36l1HPFHippocampal formation100
100
Zfp36l1HYHypothalamus94.01
83.11
Zfp36l1LSXLateral septal complex100
100
Zfp36l1MBMidbrain100
100
Zfp36l1MYMedulla100
100
Zfp36l1OLFOlfactory bulb100
100
Zfp36l1PPons88.39
92.18
Zfp36l1PALPallidum91.41
82.08
Zfp36l1RHPRetrohippocampal region100
100
Zfp36l1sAMYStriatum-like amygdalar nuclei100
100
Zfp36l1STRStriatum100
100
Zfp36l1STRdStriatum dorsal region100
100
Zfp36l1STRvStriatum ventral region100
100
Zfp36l1THThalamus100
100
Peptide Top
Peptide Name Peptide Lengh Peptide Start Peptide End Peptide Sequence Source
PAp00039670 10 173 182 CHFIHNAEER Peptide Atlas

Simple Query:


  (e.g. CHD8)

Syndromic Genes

Non-syndromic Genes

AutismKB Statistics

  • Studies: 1,036
  • Genes: 1,379
  • CNVs/SVs: 5,420
  • SNVs/Indels: 11,669
  • de novo Mutations: 5,669
  • Mosaics: 789
  • Linkage Regions: 172
  • Paper Collected: 6/30/2018
  • Last Update: 8/26/2018


Copyright © 2017, Center for Bioinformatics , Peking University | All Rights Reserved