AutismKB 2.0

Annotation Detail for STAU1


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Basic Information Top
Gene Symbol:STAU1 ( FLJ25010,STAU )
Gene Full Name: staufen, RNA binding protein, homolog 1 (Drosophila)
Band: 20q13.13
Quick LinksEntrez ID:6780; OMIM: 601716; Uniprot ID:STAU1_HUMAN; ENSEMBL ID: ENSG00000124214; HGNC ID: 11370
Relate to Another Database: SFARIGene; denovo-db
Unigene EST Top
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
embryoid body7 / 7076198
blastocyst9 / 62319144
fetus84 / 564012148
neonate5 / 31097160
infant1 / 2362042
juvenile1 / 5555617
adult220 / 1939121113
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
adrenal tumor1 / 1279478
bladder carcinoma2 / 17475114
breast (mammary gland) tumor11 / 94178116
cervical tumor5 / 34366145
chondrosarcoma12 / 82823144
colorectal tumor21 / 114246183
esophageal tumor0 / 172900 
gastrointestinal tumor24 / 119369201
germ cell tumor56 / 263845212
glioma8 / 10688374
head and neck tumor16 / 136302117
kidney tumor9 / 68959130
leukemia5 / 9584252
liver tumor5 / 9635951
lung tumor6 / 10312758
lymphoma4 / 7175555
non-neoplasia12 / 97250123
normal369 / 3360307109
ovarian tumor8 / 76682104
pancreatic tumor5 / 10461647
primitive neuroectodermal tumor of the CNS5 / 12568039
prostate cancer14 / 102680136
retinoblastoma6 / 46356129
skin tumor18 / 124949144
soft tissue/muscle tissue tumor16 / 125191127
uterine tumor7 / 9025777
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
adipose tissue1 / 1310676
adrenal gland6 / 33197180
ascites9 / 40015224
bladder4 / 29757134
blood3 / 12347824
bone9 / 71655125
bone marrow6 / 48801122
brain150 / 1100989136
cervix7 / 48171145
connective tissue15 / 149255100
ear1 / 1621261
embryonic tissue23 / 215722106
esophagus0 / 202090 
eye27 / 211054127
heart9 / 89626100
intestine33 / 234472140
kidney41 / 211777193
larynx0 / 241450 
liver20 / 20774396
lung32 / 33697494
lymph1 / 4427022
lymph node10 / 91610109
mammary gland12 / 15327178
mouth13 / 67052193
muscle4 / 10771537
nerve1 / 1576863
ovary8 / 10205178
pancreas11 / 21481251
parathyroid1 / 2053948
pharynx0 / 413280 
pituitary gland0 / 165850 
placenta30 / 280825106
prostate19 / 189345100
salivary gland1 / 2015549
skin28 / 210574132
spleen5 / 5395292
stomach6 / 9661962
testis82 / 330442248
thymus26 / 81131320
thyroid6 / 47473126
tonsil0 / 169990 
trachea15 / 52413286
umbilical cord1 / 1368073
uterus20 / 23287885
vascular8 / 51780154
Microarray in BioGPS Top
Select probe  
  • Microarray Platform: GeneAtlas U133A, gcrma
  • Affymatrix Probe ID: 213037_x_at
Cell line Expression level Expression bar
721_B_lymphoblasts595.35
Adipocyte198.7
AdrenalCortex193.05
Adrenalgland258.4
Amygdala321.25
Appendix80.05
AtrioventricularNode26.65
BDCA4+_DentriticCells376.2
Bonemarrow219.25
BronchialEpithelialCells579
CD105+_Endothelial1015.55
CD14+_Monocytes437.65
CD19+_BCells(neg._sel.)291.75
CD33+_Myeloid453.25
CD34+711.9
CD4+_Tcells330.5
CD56+_NKCells394.45
CD71+_EarlyErythroid888.8
CD8+_Tcells281.1
CardiacMyocytes184.65
Caudatenucleus209.75
Cerebellum240.5
CerebellumPeduncles250.55
CiliaryGanglion103.8
CingulateCortex317.3
Colorectaladenocarcinoma745.3
DorsalRootGanglion80.35
FetalThyroid793.45
Fetalbrain469.25
Fetalliver348.8
Fetallung445.55
GlobusPallidus108.15
Heart204.3
Hypothalamus389.75
Kidney434.25
Leukemia_chronicMyelogenousK-562153.95
Leukemia_promyelocytic-HL-60256.75
Leukemialymphoblastic(MOLT-4)346.8
Liver344.55
Lung409.8
Lymphnode162.7
Lymphoma_burkitts(Daudi)299.55
Lymphoma_burkitts(Raji)624.9
MedullaOblongata213.55
OccipitalLobe267
OlfactoryBulb334.2
Ovary108.1
Pancreas337.25
PancreaticIslet410.55
ParietalLobe219.9
Pituitary154.25
Placenta480.55
Pons139.75
PrefrontalCortex560.55
Prostate578.55
Salivarygland237.05
SkeletalMuscle14.9
Skin103.1
SmoothMuscle519.2
Spinalcord405
SubthalamicNucleus225.05
SuperiorCervicalGanglion77.1
TemporalLobe201.3
Testis342.55
TestisGermCell316.65
TestisIntersitial174.3
TestisLeydigCell191.25
TestisSeminiferousTubule202
Thalamus239.2
Thymus279.8
Thyroid756.45
Tongue103.1
Tonsil179.15
Trachea297.5
TrigeminalGanglion39.7
Uterus404.5
UterusCorpus136.8
WholeBlood347.8
Wholebrain460
colon252.15
pineal_day440.62
pineal_night466.46
retina423.7
small_intestine337.25
Allen Brain Atlas Top
Human Whole Brain Microarrayview in Allen Brain Atlas
  • Probe id     Donor id      
  • Probe name: CUST_11027_PI416261804
  • Donor H0351.2001
  • Sex: Male     Age: 24 years     Race/Ethnicity: African American     Handedness: Left
  • Tissue Receipt Date: 7/29/2009     Serology: Pass      Tissue pH :6.72     Additional Medical Information :History of asthma
  • Postmortem Interval: 23 hours (estimated time of death to time that tissue is frozen)
  • Toxicology: Positive for atropine and caffeine, at levels usually not toxicologically significant
Tissue Expression(mean ± stddev) Expression Bar
Amygdala7.95 ± 0.29
Basal Forebrain7.78 ± 0.12
Basal Part of Pons7.73 ± 0.26
Cerebellar Cortex7.69 ± 0.23
Cerebellar Nuclei7.94 ± 0.17
Claustrum8.17 ± 0.31
Epithalamus7.86 ± 0.3
Frontal Lobe7.8 ± 0.28
Globus Pallidus8.1 ± 0.17
Hypothalamus7.67 ± 0.31
Insula7.81 ± 0.27
Limbic Lobe7.83 ± 0.28
Mesencephalon7.86 ± 0.3
Myelencephalon7.84 ± 0.3
Occipital Lobe7.95 ± 0.33
Parietal Lobe7.89 ± 0.24
Pontine Tegmentum7.9 ± 0.26
Striatum7.9 ± 0.28
Subthalamus7.51 ± 0.55
Temporal Lobe7.83 ± 0.25
Thalamus7.86 ± 0.22
White Matter8.48 ± 0.29
Mouse Brain ISH
Gene Symbol Brain Structure ID Brain Structure Name Express Desity/Level (Meatured by ISH) Express Bar
Stau1CBCerebellum3.45
4.46
Stau1CTXCerebral cortex5.42
4.45
Stau1HIPHippocampal region12.43
12.99
Stau1HPFHippocampal formation9.95
9.47
Stau1HYHypothalamus6.09
4.58
Stau1LSXLateral septal complex3.15
2.71
Stau1MBMidbrain2.06
2.48
Stau1MYMedulla2.42
3.24
Stau1OLFOlfactory bulb11.09
12.48
Stau1PPons4.52
6.09
Stau1PALPallidum1.84
1.48
Stau1RHPRetrohippocampal region4.18
3.11
Stau1sAMYStriatum-like amygdalar nuclei1.28
1.26
Stau1STRStriatum2.09
1.93
Stau1STRdStriatum dorsal region1.15
1.27
Stau1STRvStriatum ventral region4.8
3.71
Stau1THThalamus1.62
1.46
Peptide Top
Peptide Name Peptide Lengh Peptide Start Peptide End Peptide Sequence Source
PAp00027058 25 431 455 NNKNEFVSLINCSSQPPLISHGIGK Peptide Atlas
STAU1_HUMAN_146 13 146 158 QAAKHDAAAKALR PRIDE
STAU1_HUMAN_207 8 207 214 ESGPPHMK PRIDE

Simple Query:


  (e.g. CHD8)

Syndromic Genes

Non-syndromic Genes

AutismKB Statistics

  • Studies: 1,036
  • Genes: 1,379
  • CNVs/SVs: 5,420
  • SNVs/Indels: 11,669
  • de novo Mutations: 5,669
  • Mosaics: 789
  • Linkage Regions: 172
  • Paper Collected: 6/30/2018
  • Last Update: 8/26/2018


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