AutismKB 2.0

Annotation Detail for STC1


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Basic Information Top
Gene Symbol:STC1 ( STC )
Gene Full Name: stanniocalcin 1
Band: 8p21.2
Quick LinksEntrez ID:6781; OMIM: 601185; Uniprot ID:STC1_HUMAN; ENSEMBL ID: ENSG00000159167; HGNC ID: 11373
Relate to Another Database: SFARIGene; denovo-db
Unigene EST Top
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
embryoid body0 / 707610 
blastocyst2 / 6231932
fetus10 / 56401217
neonate12 / 31097385
infant0 / 236200 
juvenile0 / 555560 
adult55 / 193912128
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
adrenal tumor0 / 127940 
bladder carcinoma0 / 174750 
breast (mammary gland) tumor2 / 9417821
cervical tumor1 / 3436629
chondrosarcoma8 / 8282396
colorectal tumor0 / 1142460 
esophageal tumor1 / 1729057
gastrointestinal tumor1 / 1193698
germ cell tumor4 / 26384515
glioma1 / 1068839
head and neck tumor6 / 13630244
kidney tumor1 / 6895914
leukemia0 / 958420 
liver tumor0 / 963590 
lung tumor2 / 10312719
lymphoma0 / 717550 
non-neoplasia0 / 972500 
normal162 / 336030748
ovarian tumor1 / 7668213
pancreatic tumor1 / 1046169
primitive neuroectodermal tumor of the CNS4 / 12568031
prostate cancer0 / 1026800 
retinoblastoma0 / 463560 
skin tumor0 / 1249490 
soft tissue/muscle tissue tumor3 / 12519123
uterine tumor4 / 9025744
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
adipose tissue1 / 1310676
adrenal gland1 / 3319730
ascites0 / 400150 
bladder0 / 297570 
blood0 / 1234780 
bone4 / 7165555
bone marrow0 / 488010 
brain26 / 110098923
cervix3 / 4817162
connective tissue8 / 14925553
ear0 / 162120 
embryonic tissue3 / 21572213
esophagus1 / 2020949
eye11 / 21105452
heart1 / 8962611
intestine1 / 2344724
kidney32 / 211777151
larynx0 / 241450 
liver0 / 2077430 
lung18 / 33697453
lymph0 / 442700 
lymph node0 / 916100 
mammary gland8 / 15327152
mouth1 / 6705214
muscle3 / 10771527
nerve0 / 157680 
ovary1 / 1020519
pancreas7 / 21481232
parathyroid0 / 205390 
pharynx0 / 413280 
pituitary gland1 / 1658560
placenta9 / 28082532
prostate2 / 18934510
salivary gland1 / 2015549
skin14 / 21057466
spleen0 / 539520 
stomach2 / 9661920
testis1 / 3304423
thymus7 / 8113186
thyroid4 / 4747384
tonsil0 / 169990 
trachea7 / 52413133
umbilical cord0 / 136800 
uterus11 / 23287847
vascular25 / 51780482
Microarray in BioGPS Top
Select probe  
  • Microarray Platform: GeneAtlas U133A, gcrma
  • Affymatrix Probe ID: 204597_x_at
Cell line Expression level Expression bar
721_B_lymphoblasts4.25
Adipocyte3.3
AdrenalCortex3.45
Adrenalgland2.8
Amygdala3.55
Appendix3.5
AtrioventricularNode2.6
BDCA4+_DentriticCells3.75
Bonemarrow3.3
BronchialEpithelialCells3.35
CD105+_Endothelial3.4
CD14+_Monocytes3.6
CD19+_BCells(neg._sel.)3.6
CD33+_Myeloid4.35
CD34+4.25
CD4+_Tcells3.7
CD56+_NKCells4.05
CD71+_EarlyErythroid3.15
CD8+_Tcells3.3
CardiacMyocytes4.25
Caudatenucleus3
Cerebellum2.7
CerebellumPeduncles3.8
CiliaryGanglion2.35
CingulateCortex3.4
Colorectaladenocarcinoma3.4
DorsalRootGanglion2.55
FetalThyroid3.25
Fetalbrain3.35
Fetalliver2.9
Fetallung3.85
GlobusPallidus2.45
Heart4.25
Hypothalamus3.7
Kidney3.15
Leukemia_chronicMyelogenousK-5623.05
Leukemia_promyelocytic-HL-603
Leukemialymphoblastic(MOLT-4)2.7
Liver4.35
Lung3.7
Lymphnode2.9
Lymphoma_burkitts(Daudi)4.3
Lymphoma_burkitts(Raji)4.65
MedullaOblongata3.05
OccipitalLobe3
OlfactoryBulb2.65
Ovary2.2
Pancreas2.7
PancreaticIslet14.05
ParietalLobe3.5
Pituitary3.9
Placenta3.5
Pons3.2
PrefrontalCortex4.2
Prostate3.95
Salivarygland2.7
SkeletalMuscle3.85
Skin2.55
SmoothMuscle512.85
Spinalcord3.55
SubthalamicNucleus3.05
SuperiorCervicalGanglion3.75
TemporalLobe3.05
Testis2.9
TestisGermCell2.85
TestisIntersitial2.8
TestisLeydigCell3.3
TestisSeminiferousTubule2.9
Thalamus3.4
Thymus2.7
Thyroid6.9
Tongue3.35
Tonsil3.25
Trachea2.8
TrigeminalGanglion3.4
Uterus2.8
UterusCorpus7.55
WholeBlood3.7
Wholebrain2.85
colon3.35
pineal_day4.22
pineal_night4.1
retina6.625
small_intestine3.25
Allen Brain Atlas Top
Human Whole Brain Microarrayview in Allen Brain Atlas
  • Probe id     Donor id      
  • Probe name: A_23_P314755
  • Donor H0351.2001
  • Sex: Male     Age: 24 years     Race/Ethnicity: African American     Handedness: Left
  • Tissue Receipt Date: 7/29/2009     Serology: Pass      Tissue pH :6.72     Additional Medical Information :History of asthma
  • Postmortem Interval: 23 hours (estimated time of death to time that tissue is frozen)
  • Toxicology: Positive for atropine and caffeine, at levels usually not toxicologically significant
Tissue Expression(mean ± stddev) Expression Bar
Amygdala1.92 ± 0.95
Basal Forebrain1.44 ± 0.29
Basal Part of Pons1.18 ± 0.31
Cerebellar Cortex1.39 ± 0.71
Cerebellar Nuclei1.75 ± 0.72
Claustrum2.34 ± 0.85
Epithalamus1.27 ± 0.7
Frontal Lobe1.4 ± 0.65
Globus Pallidus2.07 ± 0.38
Hypothalamus1.75 ± 0.74
Insula1.35 ± 0.45
Limbic Lobe1.51 ± 0.62
Mesencephalon1.82 ± 0.71
Myelencephalon1.58 ± 0.64
Occipital Lobe1.64 ± 0.59
Parietal Lobe1.49 ± 0.58
Pontine Tegmentum1.51 ± 0.61
Striatum1.77 ± 0.63
Subthalamus1.58 ± 0.57
Temporal Lobe1.44 ± 0.61
Thalamus1.64 ± 0.55
White Matter1.98 ± 0.21
Mouse Brain ISH
Gene Symbol Brain Structure ID Brain Structure Name Express Desity/Level (Meatured by ISH) Express Bar
Stc1CBCerebellum37.09
30.65
Stc1CTXCerebral cortex41.66
26.94
Stc1HIPHippocampal region49.18
35.14
Stc1HPFHippocampal formation47.8
34.08
Stc1HYHypothalamus21.73
16.23
Stc1LSXLateral septal complex7.34
4.17
Stc1MBMidbrain16.5
13.01
Stc1MYMedulla36.54
33.83
Stc1OLFOlfactory bulb60.79
35.82
Stc1PPons25.01
22.77
Stc1PALPallidum20.5
16.05
Stc1RHPRetrohippocampal region46.2
31.49
Stc1sAMYStriatum-like amygdalar nuclei43.31
25.58
Stc1STRStriatum21.9
13.35
Stc1STRdStriatum dorsal region18.35
11.02
Stc1STRvStriatum ventral region30.06
19.27
Stc1THThalamus20.71
15.07
Peptide Top

Simple Query:


  (e.g. CHD8)

Syndromic Genes

Non-syndromic Genes

AutismKB Statistics

  • Studies: 1,036
  • Genes: 1,379
  • CNVs/SVs: 5,420
  • SNVs/Indels: 11,669
  • de novo Mutations: 5,669
  • Mosaics: 789
  • Linkage Regions: 172
  • Paper Collected: 6/30/2018
  • Last Update: 8/26/2018


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