AutismKB 2.0

Annotation Detail for HSPA13


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Basic Information Top
Gene Symbol:HSPA13 ( STCH )
Gene Full Name: heat shock protein 70kDa family, member 13
Band: 21q11.2
Quick LinksEntrez ID:6782; OMIM: 601100; Uniprot ID:HSP13_HUMAN; ENSEMBL ID: ENSG00000155304; HGNC ID: 11375
Relate to Another Database: SFARIGene; denovo-db
Unigene EST Top
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
embryoid body6 / 7076184
blastocyst6 / 6231996
fetus43 / 56401276
neonate0 / 310970 
infant2 / 2362084
juvenile0 / 555560 
adult106 / 193912154
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
adrenal tumor3 / 12794234
bladder carcinoma2 / 17475114
breast (mammary gland) tumor5 / 9417853
cervical tumor1 / 3436629
chondrosarcoma5 / 8282360
colorectal tumor3 / 11424626
esophageal tumor1 / 1729057
gastrointestinal tumor2 / 11936916
germ cell tumor35 / 263845132
glioma3 / 10688328
head and neck tumor1 / 1363027
kidney tumor7 / 68959101
leukemia7 / 9584273
liver tumor5 / 9635951
lung tumor2 / 10312719
lymphoma0 / 717550 
non-neoplasia5 / 9725051
normal259 / 336030777
ovarian tumor5 / 7668265
pancreatic tumor2 / 10461619
primitive neuroectodermal tumor of the CNS5 / 12568039
prostate cancer3 / 10268029
retinoblastoma3 / 4635664
skin tumor3 / 12494924
soft tissue/muscle tissue tumor3 / 12519123
uterine tumor1 / 9025711
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
adipose tissue0 / 131060 
adrenal gland3 / 3319790
ascites1 / 4001524
bladder7 / 29757235
blood5 / 12347840
bone4 / 7165555
bone marrow2 / 4880140
brain143 / 1100989129
cervix5 / 48171103
connective tissue9 / 14925560
ear0 / 162120 
embryonic tissue18 / 21572283
esophagus1 / 2020949
eye20 / 21105494
heart3 / 8962633
intestine8 / 23447234
kidney20 / 21177794
larynx0 / 241450 
liver7 / 20774333
lung17 / 33697450
lymph0 / 442700 
lymph node8 / 9161087
mammary gland11 / 15327171
mouth2 / 6705229
muscle2 / 10771518
nerve0 / 157680 
ovary5 / 10205148
pancreas6 / 21481227
parathyroid0 / 205390 
pharynx1 / 4132824
pituitary gland0 / 165850 
placenta22 / 28082578
prostate7 / 18934536
salivary gland1 / 2015549
skin3 / 21057414
spleen1 / 5395218
stomach0 / 966190 
testis57 / 330442172
thymus4 / 8113149
thyroid0 / 474730 
tonsil0 / 169990 
trachea13 / 52413248
umbilical cord0 / 136800 
uterus19 / 23287881
vascular6 / 51780115
Microarray in BioGPS Top
Select probe  
  • Microarray Platform: GeneAtlas U133A, gcrma
  • Affymatrix Probe ID: 202558_s_at
Cell line Expression level Expression bar
721_B_lymphoblasts19.2
Adipocyte8.8
AdrenalCortex13.55
Adrenalgland8.85
Amygdala16.35
Appendix12.75
AtrioventricularNode12
BDCA4+_DentriticCells125.45
Bonemarrow11.1
BronchialEpithelialCells13.5
CD105+_Endothelial9.95
CD14+_Monocytes11.75
CD19+_BCells(neg._sel.)10.4
CD33+_Myeloid12.6
CD34+13.3
CD4+_Tcells10.8
CD56+_NKCells15.85
CD71+_EarlyErythroid30.25
CD8+_Tcells9.85
CardiacMyocytes21.75
Caudatenucleus7.9
Cerebellum7.75
CerebellumPeduncles12
CiliaryGanglion11.4
CingulateCortex9.8
Colorectaladenocarcinoma10.25
DorsalRootGanglion9.95
FetalThyroid10.5
Fetalbrain10
Fetalliver10.35
Fetallung8.1
GlobusPallidus8.8
Heart15.4
Hypothalamus10.45
Kidney7.9
Leukemia_chronicMyelogenousK-56225.85
Leukemia_promyelocytic-HL-608.75
Leukemialymphoblastic(MOLT-4)7.15
Liver16.1
Lung9.95
Lymphnode7.55
Lymphoma_burkitts(Daudi)13.35
Lymphoma_burkitts(Raji)16
MedullaOblongata8.8
OccipitalLobe9.05
OlfactoryBulb7.8
Ovary11.1
Pancreas9
PancreaticIslet117.1
ParietalLobe11.35
Pituitary20.8
Placenta10.55
Pons9.75
PrefrontalCortex10.4
Prostate10.6
Salivarygland8.75
SkeletalMuscle14.75
Skin13
SmoothMuscle20.95
Spinalcord9.25
SubthalamicNucleus9.7
SuperiorCervicalGanglion20.25
TemporalLobe9.9
Testis7.85
TestisGermCell15.85
TestisIntersitial14.4
TestisLeydigCell11.5
TestisSeminiferousTubule11.8
Thalamus10.45
Thymus6.4
Thyroid11.2
Tongue10.8
Tonsil9.8
Trachea8.35
TrigeminalGanglion13.85
Uterus7.85
UterusCorpus11.3
WholeBlood10.3
Wholebrain7
colon12
pineal_day72.22
pineal_night77.78
retina12.475
small_intestine12.45
Allen Brain Atlas Top
Human Whole Brain Microarrayview in Allen Brain Atlas
  • Probe id     Donor id      
  • Probe name: A_23_P17606
  • Donor H0351.2001
  • Sex: Male     Age: 24 years     Race/Ethnicity: African American     Handedness: Left
  • Tissue Receipt Date: 7/29/2009     Serology: Pass      Tissue pH :6.72     Additional Medical Information :History of asthma
  • Postmortem Interval: 23 hours (estimated time of death to time that tissue is frozen)
  • Toxicology: Positive for atropine and caffeine, at levels usually not toxicologically significant
Tissue Expression(mean ± stddev) Expression Bar
Amygdala4.96 ± 0.47
Basal Forebrain5.09 ± 0.27
Basal Part of Pons4.94 ± 0.39
Cerebellar Cortex4.74 ± 0.38
Cerebellar Nuclei5 ± 0.53
Claustrum4.94 ± 0.55
Epithalamus5.01 ± 0.45
Frontal Lobe5.15 ± 0.49
Globus Pallidus4.66 ± 0.64
Hypothalamus5.54 ± 0.47
Insula5.08 ± 0.42
Limbic Lobe5.11 ± 0.54
Mesencephalon5.19 ± 0.56
Myelencephalon5.02 ± 0.55
Occipital Lobe4.86 ± 0.54
Parietal Lobe5.11 ± 0.46
Pontine Tegmentum5.06 ± 0.55
Striatum5.08 ± 0.64
Subthalamus5.25 ± 0.7
Temporal Lobe5.19 ± 0.4
Thalamus4.96 ± 0.57
White Matter3.89 ± 1.02
Mouse Brain ISH
Gene Symbol Brain Structure ID Brain Structure Name Express Desity/Level (Meatured by ISH) Express Bar
StchCBCerebellum0.51
0.66
StchCTXCerebral cortex0.92
1.05
StchHIPHippocampal region0.22
0.23
StchHPFHippocampal formation0.26
0.22
StchHYHypothalamus0.38
0.29
StchLSXLateral septal complex0.16
0.12
StchMBMidbrain0.46
0.56
StchMYMedulla7.41
9.54
StchOLFOlfactory bulb0.66
0.48
StchPPons0.49
0.35
StchPALPallidum0.18
0.65
StchRHPRetrohippocampal region0.28
0.19
StchsAMYStriatum-like amygdalar nuclei0.18
0.21
StchSTRStriatum0.28
0.23
StchSTRdStriatum dorsal region0.36
0.3
StchSTRvStriatum ventral region0.08
0.04
StchTHThalamus3.63
5.21
Peptide Top
Peptide Name Peptide Lengh Peptide Start Peptide End Peptide Sequence Source
PAp00503658 12 369 380 LFDTLNEDLFQK Peptide Atlas

Simple Query:


  (e.g. CHD8)

Syndromic Genes

Non-syndromic Genes

AutismKB Statistics

  • Studies: 1,036
  • Genes: 1,379
  • CNVs/SVs: 5,420
  • SNVs/Indels: 11,669
  • de novo Mutations: 5,669
  • Mosaics: 789
  • Linkage Regions: 172
  • Paper Collected: 6/30/2018
  • Last Update: 8/26/2018


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