Annotation Detail for STIM1
Basic Information Top
| Gene Symbol: | STIM1 ( D11S4896E,GOK ) |
|---|---|
| Gene Full Name: | stromal interaction molecule 1 |
| Band: | 11p15.4 |
| Quick Links | Entrez ID:6786; OMIM: 605921; Uniprot ID:STIM1_HUMAN; ENSEMBL ID: ENSG00000167323; HGNC ID: 11386 |
| Relate to Another Database: | SFARIGene; denovo-db |
- Unigene ID: Hs.501735
| Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
|---|---|---|---|
 | |||
| embryoid body | 3 / 70761 | 42 |  |
| blastocyst | 0 / 62319 | 0 | |
| fetus | 19 / 564012 | 33 | |
| neonate | 0 / 31097 | 0 | |
| infant | 0 / 23620 | 0 | |
| juvenile | 2 / 55556 | 35 | |
| adult | 121 / 1939121 | 62 |  |
| Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
|---|---|---|---|
| |||
| adrenal tumor | 0 / 12794 | 0 | |
| bladder carcinoma | 0 / 17475 | 0 | |
| breast (mammary gland) tumor | 1 / 94178 | 10 |  |
| cervical tumor | 1 / 34366 | 29 | |
| chondrosarcoma | 9 / 82823 | 108 | |
| colorectal tumor | 5 / 114246 | 43 | |
| esophageal tumor | 0 / 17290 | 0 | |
| gastrointestinal tumor | 4 / 119369 | 33 | |
| germ cell tumor | 10 / 263845 | 37 | |
| glioma | 10 / 106883 | 93 | |
| head and neck tumor | 14 / 136302 | 102 | |
| kidney tumor | 7 / 68959 | 101 | |
| leukemia | 12 / 95842 | 125 | |
| liver tumor | 1 / 96359 | 10 | |
| lung tumor | 4 / 103127 | 38 | |
| lymphoma | 3 / 71755 | 41 | |
| non-neoplasia | 3 / 97250 | 30 | |
| normal | 160 / 3360307 | 47 | |
| ovarian tumor | 2 / 76682 | 26 | |
| pancreatic tumor | 9 / 104616 | 86 | |
| primitive neuroectodermal tumor of the CNS | 6 / 125680 | 47 | |
| prostate cancer | 4 / 102680 | 38 | |
| retinoblastoma | 0 / 46356 | 0 | |
| skin tumor | 11 / 124949 | 88 | |
| soft tissue/muscle tissue tumor | 1 / 125191 | 7 | |
| uterine tumor | 2 / 90257 | 22 | |
| Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
|---|---|---|---|
| |||
| adipose tissue | 0 / 13106 | 0 | |
| adrenal gland | 0 / 33197 | 0 | |
| ascites | 2 / 40015 | 49 | |
| bladder | 0 / 29757 | 0 | |
| blood | 12 / 123478 | 97 | |
| bone | 4 / 71655 | 55 | |
| bone marrow | 0 / 48801 | 0 | |
| brain | 44 / 1100989 | 39 | |
| cervix | 1 / 48171 | 20 | |
| connective tissue | 4 / 149255 | 26 | |
| ear | 0 / 16212 | 0 | |
| embryonic tissue | 5 / 215722 | 23 | |
| esophagus | 0 / 20209 | 0 | |
| eye | 17 / 211054 | 80 | |
| heart | 5 / 89626 | 55 | |
| intestine | 11 / 234472 | 46 | |
| kidney | 14 / 211777 | 66 | |
| larynx | 1 / 24145 | 41 | |
| liver | 4 / 207743 | 19 | |
| lung | 20 / 336974 | 59 | |
| lymph | 1 / 44270 | 22 | |
| lymph node | 5 / 91610 | 54 | |
| mammary gland | 5 / 153271 | 32 | |
| mouth | 7 / 67052 | 104 | |
| muscle | 3 / 107715 | 27 | |
| nerve | 2 / 15768 | 126 | |
| ovary | 3 / 102051 | 29 | |
| pancreas | 17 / 214812 | 79 | |
| parathyroid | 1 / 20539 | 48 | |
| pharynx | 5 / 41328 | 120 | |
| pituitary gland | 1 / 16585 | 60 | |
| placenta | 16 / 280825 | 56 | |
| prostate | 10 / 189345 | 52 | |
| salivary gland | 1 / 20155 | 49 | |
| skin | 25 / 210574 | 118 | |
| spleen | 2 / 53952 | 37 | |
| stomach | 1 / 96619 | 10 | |
| testis | 16 / 330442 | 48 | |
| thymus | 14 / 81131 | 172 | |
| thyroid | 3 / 47473 | 63 | |
| tonsil | 4 / 16999 | 235 |  |
| trachea | 3 / 52413 | 57 | |
| umbilical cord | 0 / 13680 | 0 | |
| uterus | 10 / 232878 | 42 | |
| vascular | 1 / 51780 | 19 | |
- Microarray Platform: GeneAtlas U133A, gcrma
- Affymatrix Probe ID: 202764_at
| Cell line | Expression level | Expression bar |
|---|---|---|
| ||
| 721_B_lymphoblasts | 14.2 | |
| Adipocyte | 5.6 | |
| AdrenalCortex | 5.65 | |
| Adrenalgland | 4.55 | |
| Amygdala | 6.1 | |
| Appendix | 5.6 | |
| AtrioventricularNode | 4.35 | |
| BDCA4+_DentriticCells | 9.45 | |
| Bonemarrow | 6.65 | |
| BronchialEpithelialCells | 5.4 | |
| CD105+_Endothelial | 5.75 | |
| CD14+_Monocytes | 13.85 | |
| CD19+_BCells(neg._sel.) | 18.5 | |
| CD33+_Myeloid | 19.15 | |
| CD34+ | 7.25 | |
| CD4+_Tcells | 15.7 | |
| CD56+_NKCells | 25.95 | |
| CD71+_EarlyErythroid | 6.55 | |
| CD8+_Tcells | 12.8 | |
| CardiacMyocytes | 6.9 | |
| Caudatenucleus | 13.5 | |
| Cerebellum | 5.7 | |
| CerebellumPeduncles | 6.3 | |
| CiliaryGanglion | 3.8 | |
| CingulateCortex | 9.35 | |
| Colorectaladenocarcinoma | 5.65 | |
| DorsalRootGanglion | 4.65 | |
| FetalThyroid | 5.5 | |
| Fetalbrain | 5.3 | |
| Fetalliver | 4.85 | |
| Fetallung | 4.75 | |
| GlobusPallidus | 13.55 | |
| Heart | 6.95 | |
| Hypothalamus | 5.7 | |
| Kidney | 5.2 | |
| Leukemia_chronicMyelogenousK-562 | 9.3 | |
| Leukemia_promyelocytic-HL-60 | 4.85 | |
| Leukemialymphoblastic(MOLT-4) | 5.5 | |
| Liver | 7.35 | |
| Lung | 7 | |
| Lymphnode | 10.4 | |
| Lymphoma_burkitts(Daudi) | 8.5 | |
| Lymphoma_burkitts(Raji) | 12.45 | |
| MedullaOblongata | 4.85 | |
| OccipitalLobe | 5 | |
| OlfactoryBulb | 5 | |
| Ovary | 3.6 | |
| Pancreas | 4.45 | |
| PancreaticIslet | 5.95 | |
| ParietalLobe | 5.9 | |
| Pituitary | 6.4 | |
| Placenta | 9.6 | |
| Pons | 5.9 | |
| PrefrontalCortex | 7 | |
| Prostate | 5.9 | |
| Salivarygland | 6 | |
| SkeletalMuscle | 7.85 | |
| Skin | 4.15 | |
| SmoothMuscle | 6.3 | |
| Spinalcord | 6.1 | |
| SubthalamicNucleus | 5.55 | |
| SuperiorCervicalGanglion | 6.2 | |
| TemporalLobe | 5.1 | |
| Testis | 6.55 | |
| TestisGermCell | 7 | |
| TestisIntersitial | 4.7 | |
| TestisLeydigCell | 6 | |
| TestisSeminiferousTubule | 5.25 | |
| Thalamus | 5.8 | |
| Thymus | 8.75 | |
| Thyroid | 6.6 | |
| Tongue | 6.6 | |
| Tonsil | 5.2 | |
| Trachea | 7.65 | |
| TrigeminalGanglion | 5.3 | |
| Uterus | 4.55 | |
| UterusCorpus | 4.85 | |
| WholeBlood | 9.1 | |
| Wholebrain | 5.1 | |
| colon | 5.25 | |
| pineal_day | 9.58 | |
| pineal_night | 7.88 | |
| retina | 8.7 | |
| small_intestine | 4.85 | |
- Probe name: CUST_16185_PI416261804
- Donor H0351.2001
- Sex: Male Age: 24 years Race/Ethnicity: African American Handedness: Left
- Tissue Receipt Date: 7/29/2009 Serology: Pass Tissue pH :6.72 Additional Medical Information :History of asthma
- Postmortem Interval: 23 hours (estimated time of death to time that tissue is frozen)
- Toxicology: Positive for atropine and caffeine, at levels usually not toxicologically significant
| Tissue | Expression(mean ± stddev) | Expression Bar |
|---|---|---|
| Amygdala | 2.66 ± 1.11 | ![](../"images/bar_3.png"){kind=small}   |
| Basal Forebrain | 2.11 ± 0.25 | |
| Basal Part of Pons | 2.09 ± 0.73 | |
| Cerebellar Cortex | 2.22 ± 0.77 | |
| Cerebellar Nuclei | 2.49 ± 0.7 | |
| Claustrum | 2.89 ± 0.72 | |
| Epithalamus | 2.09 ± 0.65 | |
| Frontal Lobe | 2.2 ± 0.72 | |
| Globus Pallidus | 2.37 ± 0.48 | |
| Hypothalamus | 2.28 ± 0.58 | |
| Insula | 2.24 ± 0.88 | |
| Limbic Lobe | 2.2 ± 0.63 | |
| Mesencephalon | 2.42 ± 0.75 | |
| Myelencephalon | 2.29 ± 0.66 | |
| Occipital Lobe | 2.33 ± 0.59 | |
| Parietal Lobe | 2.33 ± 0.81 | |
| Pontine Tegmentum | 2.38 ± 0.73 | |
| Striatum | 2.53 ± 0.79 | |
| Subthalamus | 2.4 ± 0.8 | |
| Temporal Lobe | 2.24 ± 0.68 | |
| Thalamus | 2.19 ± 0.68 | |
| White Matter | 2.57 ± 0.25 | |
Mouse Brain ISH 
| Gene Symbol | Brain Structure ID | Brain Structure Name | Express Desity/Level (Meatured by ISH) | Express Bar |
|---|---|---|---|---|
| Stim1 | CB | Cerebellum | 33.11 | |
| 93.82 | | |||
| Stim1 | CTX | Cerebral cortex | 100 | |
| 100 | | |||
| Stim1 | HIP | Hippocampal region | 79.69 | |
| 100 | | |||
| Stim1 | HPF | Hippocampal formation | 100 | |
| 100 | | |||
| Stim1 | HY | Hypothalamus | 98.09 | |
| 98.24 | | |||
| Stim1 | LSX | Lateral septal complex | 45.7 | |
| 44.86 | | |||
| Stim1 | MB | Midbrain | 86.64 | |
| 94.68 | | |||
| Stim1 | MY | Medulla | 61.72 | |
| 92.83 | | |||
| Stim1 | OLF | Olfactory bulb | 100 | |
| 100 | | |||
| Stim1 | P | Pons | 75.19 | |
| 100 | | |||
| Stim1 | PAL | Pallidum | 96.37 | |
| 100 | | |||
| Stim1 | RHP | Retrohippocampal region | 100 | |
| 100 | | |||
| Stim1 | sAMY | Striatum-like amygdalar nuclei | 100 | |
| 100 | | |||
| Stim1 | STR | Striatum | 100 | |
| 100 | | |||
| Stim1 | STRd | Striatum dorsal region | 100 | |
| 100 | | |||
| Stim1 | STRv | Striatum ventral region | 100 | |
| 100 | | |||
| Stim1 | TH | Thalamus | 84.55 | |
| 84.61 | |
| Peptide Name | Peptide Lengh | Peptide Start | Peptide End | Peptide Sequence | Source |
|---|---|---|---|---|---|
| PAp00000727 | 20 | 31 | 50 | ATGTSSGANSEESTAAEFCR | Peptide Atlas |
| STIM1_HUMAN_314 | 12 | 314 | 325 | QKYAEEELEQVR | PRIDE |
| STIM1_HUMAN_558 | 22 | 558 | 579 | LIEGVHPGSLVEKLPDSPALAK | PRIDE |
| STIM1_HUMAN_593 | 23 | 593 | 615 | AHSLMELSPSAPPGGSPHLDSSR | PRIDE |