Annotation Detail for STRN
Basic Information Top
| Gene Symbol: | STRN ( MGC125642,SG2NA ) |
|---|---|
| Gene Full Name: | striatin, calmodulin binding protein |
| Band: | 2p22.2 |
| Quick Links | Entrez ID:6801; OMIM: NA; Uniprot ID:STRN_HUMAN; ENSEMBL ID: ENSG00000115808; HGNC ID: 11424 |
| Relate to Another Database: | SFARIGene; denovo-db |
- Unigene ID: Hs.656726
| Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
|---|---|---|---|
 | |||
| embryoid body | 2 / 70761 | 28 |  |
| blastocyst | 1 / 62319 | 16 | |
| fetus | 2 / 564012 | 3 |  |
| neonate | 0 / 31097 | 0 | |
| infant | 0 / 23620 | 0 | |
| juvenile | 1 / 55556 | 17 | |
| adult | 25 / 1939121 | 12 | |
| Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
|---|---|---|---|
| |||
| adrenal tumor | 0 / 12794 | 0 | |
| bladder carcinoma | 0 / 17475 | 0 | |
| breast (mammary gland) tumor | 2 / 94178 | 21 | |
| cervical tumor | 0 / 34366 | 0 | |
| chondrosarcoma | 1 / 82823 | 12 | |
| colorectal tumor | 4 / 114246 | 35 | |
| esophageal tumor | 1 / 17290 | 57 |  |
| gastrointestinal tumor | 1 / 119369 | 8 | |
| germ cell tumor | 1 / 263845 | 3 | |
| glioma | 0 / 106883 | 0 | |
| head and neck tumor | 0 / 136302 | 0 | |
| kidney tumor | 0 / 68959 | 0 | |
| leukemia | 6 / 95842 | 62 | |
| liver tumor | 1 / 96359 | 10 | |
| lung tumor | 1 / 103127 | 9 | |
| lymphoma | 0 / 71755 | 0 | |
| non-neoplasia | 0 / 97250 | 0 | |
| normal | 36 / 3360307 | 10 | |
| ovarian tumor | 0 / 76682 | 0 | |
| pancreatic tumor | 0 / 104616 | 0 | |
| primitive neuroectodermal tumor of the CNS | 0 / 125680 | 0 | |
| prostate cancer | 0 / 102680 | 0 | |
| retinoblastoma | 2 / 46356 | 43 | |
| skin tumor | 2 / 124949 | 16 | |
| soft tissue/muscle tissue tumor | 3 / 125191 | 23 | |
| uterine tumor | 4 / 90257 | 44 | |
| Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
|---|---|---|---|
| |||
| adipose tissue | 0 / 13106 | 0 | |
| adrenal gland | 0 / 33197 | 0 | |
| ascites | 0 / 40015 | 0 | |
| bladder | 1 / 29757 | 33 | |
| blood | 4 / 123478 | 32 | |
| bone | 0 / 71655 | 0 | |
| bone marrow | 1 / 48801 | 20 | |
| brain | 8 / 1100989 | 7 | |
| cervix | 0 / 48171 | 0 | |
| connective tissue | 2 / 149255 | 13 | |
| ear | 0 / 16212 | 0 | |
| embryonic tissue | 4 / 215722 | 18 | |
| esophagus | 1 / 20209 | 49 | |
| eye | 3 / 211054 | 14 | |
| heart | 2 / 89626 | 22 | |
| intestine | 6 / 234472 | 25 | |
| kidney | 1 / 211777 | 4 | |
| larynx | 1 / 24145 | 41 | |
| liver | 1 / 207743 | 4 | |
| lung | 1 / 336974 | 2 | |
| lymph | 0 / 44270 | 0 | |
| lymph node | 2 / 91610 | 21 | |
| mammary gland | 5 / 153271 | 32 | |
| mouth | 0 / 67052 | 0 | |
| muscle | 1 / 107715 | 9 | |
| nerve | 0 / 15768 | 0 | |
| ovary | 0 / 102051 | 0 | |
| pancreas | 6 / 214812 | 27 | |
| parathyroid | 0 / 20539 | 0 | |
| pharynx | 0 / 41328 | 0 | |
| pituitary gland | 0 / 16585 | 0 | |
| placenta | 3 / 280825 | 10 | |
| prostate | 0 / 189345 | 0 | |
| salivary gland | 0 / 20155 | 0 | |
| skin | 2 / 210574 | 9 | |
| spleen | 0 / 53952 | 0 | |
| stomach | 1 / 96619 | 10 | |
| testis | 0 / 330442 | 0 | |
| thymus | 0 / 81131 | 0 | |
| thyroid | 0 / 47473 | 0 | |
| tonsil | 0 / 16999 | 0 | |
| trachea | 0 / 52413 | 0 | |
| umbilical cord | 0 / 13680 | 0 | |
| uterus | 7 / 232878 | 30 | |
| vascular | 1 / 51780 | 19 | |
- Microarray Platform: GeneAtlas U133A, gcrma
- Affymatrix Probe ID: 205520_at
| Cell line | Expression level | Expression bar |
|---|---|---|
| ||
| 721_B_lymphoblasts | 4.95 | |
| Adipocyte | 4.05 | |
| AdrenalCortex | 4.35 | |
| Adrenalgland | 3.5 | |
| Amygdala | 4.25 | |
| Appendix | 4.5 | |
| AtrioventricularNode | 3.55 | |
| BDCA4+_DentriticCells | 4.5 | |
| Bonemarrow | 4.2 | |
| BronchialEpithelialCells | 4.05 | |
| CD105+_Endothelial | 4.15 | |
| CD14+_Monocytes | 4.35 | |
| CD19+_BCells(neg._sel.) | 4.35 | |
| CD33+_Myeloid | 5.3 | |
| CD34+ | 5.2 | |
| CD4+_Tcells | 4.4 | |
| CD56+_NKCells | 4.95 | |
| CD71+_EarlyErythroid | 3.85 | |
| CD8+_Tcells | 3.9 | |
| CardiacMyocytes | 5.25 | |
| Caudatenucleus | 3.7 | |
| Cerebellum | 3.3 | |
| CerebellumPeduncles | 4.65 | |
| CiliaryGanglion | 4.05 | |
| CingulateCortex | 4.2 | |
| Colorectaladenocarcinoma | 4.15 | |
| DorsalRootGanglion | 3.55 | |
| FetalThyroid | 4 | |
| Fetalbrain | 4.05 | |
| Fetalliver | 3.65 | |
| Fetallung | 3.35 | |
| GlobusPallidus | 3.05 | |
| Heart | 5.7 | |
| Hypothalamus | 4.4 | |
| Kidney | 3.55 | |
| Leukemia_chronicMyelogenousK-562 | 3.7 | |
| Leukemia_promyelocytic-HL-60 | 3.65 | |
| Leukemialymphoblastic(MOLT-4) | 3.25 | |
| Liver | 5.5 | |
| Lung | 4.55 | |
| Lymphnode | 3.5 | |
| Lymphoma_burkitts(Daudi) | 5.35 | |
| Lymphoma_burkitts(Raji) | 5.9 | |
| MedullaOblongata | 3.7 | |
| OccipitalLobe | 3.65 | |
| OlfactoryBulb | 3.25 | |
| Ovary | 2.9 | |
| Pancreas | 3.3 | |
| PancreaticIslet | 4.4 | |
| ParietalLobe | 4.4 | |
| Pituitary | 4.75 | |
| Placenta | 4.2 | |
| Pons | 3.9 | |
| PrefrontalCortex | 5.2 | |
| Prostate | 4.75 | |
| Salivarygland | 3.35 | |
| SkeletalMuscle | 5.05 | |
| Skin | 3.5 | |
| SmoothMuscle | 4.65 | |
| Spinalcord | 4.4 | |
| SubthalamicNucleus | 3.75 | |
| SuperiorCervicalGanglion | 6 | |
| TemporalLobe | 3.85 | |
| Testis | 3.5 | |
| TestisGermCell | 3.4 | |
| TestisIntersitial | 4.4 | |
| TestisLeydigCell | 4.1 | |
| TestisSeminiferousTubule | 3.55 | |
| Thalamus | 4.2 | |
| Thymus | 3.2 | |
| Thyroid | 5.15 | |
| Tongue | 4.1 | |
| Tonsil | 4 | |
| Trachea | 3.4 | |
| TrigeminalGanglion | 5.3 | |
| Uterus | 3.35 | |
| UterusCorpus | 3.8 | |
| WholeBlood | 4.5 | |
| Wholebrain | 3.4 | |
| colon | 4.15 | |
| pineal_day | 5.12 | |
| pineal_night | 5.04 | |
| retina | 4.95 | |
| small_intestine | 3.95 | |
- Probe name: A_32_P120863
- Donor H0351.2001
- Sex: Male Age: 24 years Race/Ethnicity: African American Handedness: Left
- Tissue Receipt Date: 7/29/2009 Serology: Pass Tissue pH :6.72 Additional Medical Information :History of asthma
- Postmortem Interval: 23 hours (estimated time of death to time that tissue is frozen)
- Toxicology: Positive for atropine and caffeine, at levels usually not toxicologically significant
| Tissue | Expression(mean ± stddev) | Expression Bar |
|---|---|---|
| Amygdala | 6.89 ± 0.38 | ![](../"images/bar_3.png"){kind=small}   |
| Basal Forebrain | 6.7 ± 0.12 | |
| Basal Part of Pons | 6.93 ± 0.24 | |
| Cerebellar Cortex | 6.66 ± 0.1 | |
| Cerebellar Nuclei | 6.75 ± 0.4 | |
| Claustrum | 6.94 ± 0.37 | |
| Epithalamus | 6.45 ± 0.53 | |
| Frontal Lobe | 6.73 ± 0.32 | |
| Globus Pallidus | 6.79 ± 0.27 | |
| Hypothalamus | 6.45 ± 0.31 | |
| Insula | 6.66 ± 0.26 | |
| Limbic Lobe | 6.98 ± 0.33 | |
| Mesencephalon | 6.81 ± 0.39 | |
| Myelencephalon | 6.78 ± 0.37 | |
| Occipital Lobe | 6.99 ± 0.29 | |
| Parietal Lobe | 6.84 ± 0.37 | |
| Pontine Tegmentum | 6.86 ± 0.42 | |
| Striatum | 8.03 ± 0.56 | |
| Subthalamus | 6.91 ± 0.36 | |
| Temporal Lobe | 6.71 ± 0.25 | |
| Thalamus | 6.71 ± 0.31 | |
| White Matter | 7.28 ± 0.27 | |
Mouse Brain ISH 
| Gene Symbol | Brain Structure ID | Brain Structure Name | Express Desity/Level (Meatured by ISH) | Express Bar |
|---|---|---|---|---|
| Strn | CB | Cerebellum | 13.12 | |
| 16.36 | | |||
| Strn | CTX | Cerebral cortex | 41.69 | |
| 33.97 | | |||
| Strn | HIP | Hippocampal region | 36.44 | |
| 58.89 | | |||
| Strn | HPF | Hippocampal formation | 35.02 | |
| 45.08 | | |||
| Strn | HY | Hypothalamus | 5.59 | |
| 4.81 | | |||
| Strn | LSX | Lateral septal complex | 23.86 | |
| 23.31 | | |||
| Strn | MB | Midbrain | 14.58 | |
| 14.84 | | |||
| Strn | MY | Medulla | 16.91 | |
| 22.12 | | |||
| Strn | OLF | Olfactory bulb | 29.38 | |
| 25.21 | | |||
| Strn | P | Pons | 16.04 | |
| 19.26 | | |||
| Strn | PAL | Pallidum | 19.99 | |
| 22.39 | | |||
| Strn | RHP | Retrohippocampal region | 34.32 | |
| 30.64 | | |||
| Strn | sAMY | Striatum-like amygdalar nuclei | 12.89 | |
| 10.72 | | |||
| Strn | STR | Striatum | 100 | |
| 100 | | |||
| Strn | STRd | Striatum dorsal region | 100 | |
| 100 | | |||
| Strn | STRv | Striatum ventral region | 100 | |
| 100 | | |||
| Strn | TH | Thalamus | 10.29 | |
| 9.24 | |
| Peptide Name | Peptide Lengh | Peptide Start | Peptide End | Peptide Sequence | Source |
|---|---|---|---|---|---|
| PAp00009762 | 13 | 765 | 777 | CYIASAGADALAK | Peptide Atlas |
| STRN_HUMAN_354 | 9 | 354 | 362 | LQDMLANLR | PRIDE |