Annotation Detail for SURF6
Basic Information Top
| Gene Symbol: | SURF6 ( FLJ30322,RRP14 ) |
|---|---|
| Gene Full Name: | surfeit 6 |
| Band: | 9q34.2 |
| Quick Links | Entrez ID:6838; OMIM: 185642; Uniprot ID:SURF6_HUMAN; ENSEMBL ID: ENSG00000148296; HGNC ID: 11478 |
| Relate to Another Database: | SFARIGene; denovo-db |
- Unigene ID: Hs.274430
| Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
|---|---|---|---|
 | |||
| embryoid body | 4 / 70761 | 56 |  |
| blastocyst | 5 / 62319 | 80 | |
| fetus | 20 / 564012 | 35 |  |
| neonate | 0 / 31097 | 0 | |
| infant | 0 / 23620 | 0 | |
| juvenile | 1 / 55556 | 17 | |
| adult | 68 / 1939121 | 35 | |
| Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
|---|---|---|---|
| |||
| adrenal tumor | 0 / 12794 | 0 | |
| bladder carcinoma | 0 / 17475 | 0 | |
| breast (mammary gland) tumor | 8 / 94178 | 84 | |
| cervical tumor | 3 / 34366 | 87 | |
| chondrosarcoma | 2 / 82823 | 24 | |
| colorectal tumor | 6 / 114246 | 52 | |
| esophageal tumor | 0 / 17290 | 0 | |
| gastrointestinal tumor | 9 / 119369 | 75 | |
| germ cell tumor | 8 / 263845 | 30 | |
| glioma | 6 / 106883 | 56 | |
| head and neck tumor | 2 / 136302 | 14 | |
| kidney tumor | 1 / 68959 | 14 | |
| leukemia | 4 / 95842 | 41 | |
| liver tumor | 2 / 96359 | 20 | |
| lung tumor | 11 / 103127 | 106 | |
| lymphoma | 11 / 71755 | 153 | |
| non-neoplasia | 2 / 97250 | 20 | |
| normal | 90 / 3360307 | 26 | |
| ovarian tumor | 1 / 76682 | 13 | |
| pancreatic tumor | 8 / 104616 | 76 | |
| primitive neuroectodermal tumor of the CNS | 11 / 125680 | 87 | |
| prostate cancer | 10 / 102680 | 97 | |
| retinoblastoma | 2 / 46356 | 43 | |
| skin tumor | 17 / 124949 | 136 | |
| soft tissue/muscle tissue tumor | 3 / 125191 | 23 | |
| uterine tumor | 2 / 90257 | 22 | |
| Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
|---|---|---|---|
| |||
| adipose tissue | 0 / 13106 | 0 | |
| adrenal gland | 0 / 33197 | 0 | |
| ascites | 4 / 40015 | 99 | |
| bladder | 0 / 29757 | 0 | |
| blood | 4 / 123478 | 32 | |
| bone | 2 / 71655 | 27 | |
| bone marrow | 0 / 48801 | 0 | |
| brain | 33 / 1100989 | 29 | |
| cervix | 3 / 48171 | 62 | |
| connective tissue | 1 / 149255 | 6 |  |
| ear | 0 / 16212 | 0 | |
| embryonic tissue | 10 / 215722 | 46 | |
| esophagus | 0 / 20209 | 0 | |
| eye | 8 / 211054 | 37 | |
| heart | 1 / 89626 | 11 | |
| intestine | 10 / 234472 | 42 | |
| kidney | 1 / 211777 | 4 | |
| larynx | 0 / 24145 | 0 | |
| liver | 7 / 207743 | 33 | |
| lung | 16 / 336974 | 47 | |
| lymph | 8 / 44270 | 180 | |
| lymph node | 2 / 91610 | 21 | |
| mammary gland | 8 / 153271 | 52 | |
| mouth | 1 / 67052 | 14 | |
| muscle | 0 / 107715 | 0 | |
| nerve | 1 / 15768 | 63 | |
| ovary | 3 / 102051 | 29 | |
| pancreas | 9 / 214812 | 41 | |
| parathyroid | 0 / 20539 | 0 | |
| pharynx | 1 / 41328 | 24 | |
| pituitary gland | 0 / 16585 | 0 | |
| placenta | 11 / 280825 | 39 | |
| prostate | 11 / 189345 | 58 | |
| salivary gland | 0 / 20155 | 0 | |
| skin | 18 / 210574 | 85 | |
| spleen | 0 / 53952 | 0 | |
| stomach | 3 / 96619 | 31 | |
| testis | 7 / 330442 | 21 | |
| thymus | 1 / 81131 | 12 | |
| thyroid | 2 / 47473 | 42 | |
| tonsil | 2 / 16999 | 117 | |
| trachea | 0 / 52413 | 0 | |
| umbilical cord | 0 / 13680 | 0 | |
| uterus | 5 / 232878 | 21 | |
| vascular | 0 / 51780 | 0 |
Microarray in - Probe name: A_23_P216739
- Donor H0351.2001
- Sex: Male Age: 24 years Race/Ethnicity: African American Handedness: Left
- Tissue Receipt Date: 7/29/2009 Serology: Pass Tissue pH :6.72 Additional Medical Information :History of asthma
- Postmortem Interval: 23 hours (estimated time of death to time that tissue is frozen)
- Toxicology: Positive for atropine and caffeine, at levels usually not toxicologically significant
| Tissue | Expression(mean ± stddev) | Expression Bar |
|---|---|---|
| Amygdala | 3.85 ± 0.77 | ![](../"images/bar_3.png"){kind=small}   |
| Basal Forebrain | 4.04 ± 0.67 | |
| Basal Part of Pons | 3.9 ± 0.59 | |
| Cerebellar Cortex | 4.1 ± 0.71 | |
| Cerebellar Nuclei | 3.96 ± 0.57 | |
| Claustrum | 3.86 ± 0.79 | |
| Epithalamus | 3.67 ± 0.72 | |
| Frontal Lobe | 3.96 ± 0.65 | |
| Globus Pallidus | 4.19 ± 0.46 | |
| Hypothalamus | 3.51 ± 0.6 | |
| Insula | 3.93 ± 0.38 | |
| Limbic Lobe | 3.94 ± 0.6 | |
| Mesencephalon | 4.04 ± 0.66 | |
| Myelencephalon | 3.98 ± 0.66 | |
| Occipital Lobe | 3.57 ± 0.59 | |
| Parietal Lobe | 3.95 ± 0.63 | |
| Pontine Tegmentum | 3.89 ± 0.59 | |
| Striatum | 3.6 ± 0.63 | |
| Subthalamus | 4.4 ± 1.09 | |
| Temporal Lobe | 4.09 ± 0.55 | |
| Thalamus | 3.91 ± 0.57 | |
| White Matter | 4.3 ± 0.24 | |
Mouse Brain ISH 
| Gene Symbol | Brain Structure ID | Brain Structure Name | Express Desity/Level (Meatured by ISH) | Express Bar |
|---|---|---|---|---|
| Surf6 | CB | Cerebellum | 0.79 | |
| 1.87 | | |||
| Surf6 | CTX | Cerebral cortex | 1.3 | |
| 1.06 | | |||
| Surf6 | HIP | Hippocampal region | 1.76 | |
| 1.44 | | |||
| Surf6 | HPF | Hippocampal formation | 1.11 | |
| 0.86 | | |||
| Surf6 | HY | Hypothalamus | 0.4 | |
| 0.75 | | |||
| Surf6 | LSX | Lateral septal complex | 1.45 | |
| 1.4 | | |||
| Surf6 | MB | Midbrain | 0.66 | |
| 1.37 | | |||
| Surf6 | MY | Medulla | 0.45 | |
| 0.75 | | |||
| Surf6 | OLF | Olfactory bulb | 0.5 | |
| 0.4 | | |||
| Surf6 | P | Pons | 0.81 | |
| 1.42 | | |||
| Surf6 | PAL | Pallidum | 0.13 | |
| 0.09 | | |||
| Surf6 | RHP | Retrohippocampal region | 0.14 | |
| 0.12 | | |||
| Surf6 | sAMY | Striatum-like amygdalar nuclei | 0.13 | |
| 0.73 | | |||
| Surf6 | STR | Striatum | 0.3 | |
| 0.41 | | |||
| Surf6 | STRd | Striatum dorsal region | 0.2 | |
| 0.32 | | |||
| Surf6 | STRv | Striatum ventral region | 0.01 | |
| 0 | | |||
| Surf6 | TH | Thalamus | 3.38 | |
| 4.68 | |
| Peptide Name | Peptide Lengh | Peptide Start | Peptide End | Peptide Sequence | Source |
|---|---|---|---|---|---|
| PAp00010420 | 12 | 18 | 29 | ICSHSAPEQQAR | Peptide Atlas |