AutismKB 2.0

Annotation Detail for SUV39H1


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Basic Information Top
Gene Symbol:SUV39H1 ( KMT1A,MG44,SUV39H )
Gene Full Name: suppressor of variegation 3-9 homolog 1 (Drosophila)
Band: Xp11.23
Quick LinksEntrez ID:6839; OMIM: 300254; Uniprot ID:SUV91_HUMAN; ENSEMBL ID: ENSG00000101945; HGNC ID: 11479
Relate to Another Database: SFARIGene; denovo-db
Unigene EST Top
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
embryoid body3 / 7076142
blastocyst2 / 6231932
fetus6 / 56401210
neonate2 / 3109764
infant0 / 236200 
juvenile5 / 5555689
adult54 / 193912127
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
adrenal tumor1 / 1279478
bladder carcinoma0 / 174750 
breast (mammary gland) tumor2 / 9417821
cervical tumor3 / 3436687
chondrosarcoma0 / 828230 
colorectal tumor2 / 11424617
esophageal tumor0 / 172900 
gastrointestinal tumor7 / 11936958
germ cell tumor22 / 26384583
glioma6 / 10688356
head and neck tumor5 / 13630236
kidney tumor1 / 6895914
leukemia6 / 9584262
liver tumor4 / 9635941
lung tumor5 / 10312748
lymphoma13 / 71755181
non-neoplasia3 / 9725030
normal83 / 336030724
ovarian tumor5 / 7668265
pancreatic tumor4 / 10461638
primitive neuroectodermal tumor of the CNS13 / 125680103
prostate cancer4 / 10268038
retinoblastoma1 / 4635621
skin tumor3 / 12494924
soft tissue/muscle tissue tumor7 / 12519155
uterine tumor0 / 902570 
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
adipose tissue0 / 131060 
adrenal gland1 / 3319730
ascites3 / 4001574
bladder0 / 297570 
blood11 / 12347889
bone3 / 7165541
bone marrow1 / 4880120
brain32 / 110098929
cervix4 / 4817183
connective tissue4 / 14925526
ear0 / 162120 
embryonic tissue8 / 21572237
esophagus0 / 202090 
eye5 / 21105423
heart2 / 8962622
intestine9 / 23447238
kidney5 / 21177723
larynx0 / 241450 
liver4 / 20774319
lung7 / 33697420
lymph7 / 44270158
lymph node4 / 9161043
mammary gland3 / 15327119
mouth6 / 6705289
muscle5 / 10771546
nerve0 / 157680 
ovary6 / 10205158
pancreas4 / 21481218
parathyroid0 / 205390 
pharynx0 / 413280 
pituitary gland0 / 165850 
placenta10 / 28082535
prostate5 / 18934526
salivary gland0 / 201550 
skin6 / 21057428
spleen2 / 5395237
stomach2 / 9661920
testis12 / 33044236
thymus8 / 8113198
thyroid0 / 474730 
tonsil0 / 169990 
trachea0 / 524130 
umbilical cord0 / 136800 
uterus7 / 23287830
vascular1 / 5178019
Microarray in BioGPS Top
Select probe  
  • Microarray Platform: GeneAtlas U133A, gcrma
  • Affymatrix Probe ID: 218619_s_at
Cell line Expression level Expression bar
721_B_lymphoblasts18.1
Adipocyte10.55
AdrenalCortex9.45
Adrenalgland7.25
Amygdala8
Appendix9.5
AtrioventricularNode6.5
BDCA4+_DentriticCells7.75
Bonemarrow9.3
BronchialEpithelialCells8.95
CD105+_Endothelial16.7
CD14+_Monocytes7
CD19+_BCells(neg._sel.)8.55
CD33+_Myeloid8.2
CD34+11.85
CD4+_Tcells9.05
CD56+_NKCells7.55
CD71+_EarlyErythroid34.35
CD8+_Tcells10.5
CardiacMyocytes11.1
Caudatenucleus6.85
Cerebellum8.1
CerebellumPeduncles11.2
CiliaryGanglion7.25
CingulateCortex10.85
Colorectaladenocarcinoma30.25
DorsalRootGanglion6.55
FetalThyroid12.55
Fetalbrain7.05
Fetalliver9.75
Fetallung6.7
GlobusPallidus5.85
Heart13.45
Hypothalamus9.55
Kidney7.95
Leukemia_chronicMyelogenousK-56210.65
Leukemia_promyelocytic-HL-6012.6
Leukemialymphoblastic(MOLT-4)17.15
Liver19.6
Lung8.9
Lymphnode7.3
Lymphoma_burkitts(Daudi)16.75
Lymphoma_burkitts(Raji)11.3
MedullaOblongata7.55
OccipitalLobe7.55
OlfactoryBulb6.15
Ovary6.35
Pancreas6.5
PancreaticIslet8.9
ParietalLobe8.7
Pituitary10.85
Placenta10.6
Pons11.5
PrefrontalCortex10.35
Prostate9.2
Salivarygland8.25
SkeletalMuscle15.1
Skin6.9
SmoothMuscle9.45
Spinalcord9.25
SubthalamicNucleus7.05
SuperiorCervicalGanglion11.6
TemporalLobe7.55
Testis10.15
TestisGermCell7.15
TestisIntersitial7.2
TestisLeydigCell10.2
TestisSeminiferousTubule12.25
Thalamus8.65
Thymus11.5
Thyroid10.25
Tongue10.15
Tonsil8.45
Trachea7.2
TrigeminalGanglion10.15
Uterus6.3
UterusCorpus10.3
WholeBlood9
Wholebrain6.8
colon8.45
pineal_day9.16
pineal_night8.2
retina10.5
small_intestine9.3
Allen Brain Atlas Top
Human Whole Brain Microarrayview in Allen Brain Atlas
  • Probe id     Donor id      
  • Probe name: CUST_8959_PI416261804
  • Donor H0351.2001
  • Sex: Male     Age: 24 years     Race/Ethnicity: African American     Handedness: Left
  • Tissue Receipt Date: 7/29/2009     Serology: Pass      Tissue pH :6.72     Additional Medical Information :History of asthma
  • Postmortem Interval: 23 hours (estimated time of death to time that tissue is frozen)
  • Toxicology: Positive for atropine and caffeine, at levels usually not toxicologically significant
Tissue Expression(mean ± stddev) Expression Bar
Amygdala1.95 ± 1.06
Basal Forebrain1.48 ± 0.2
Basal Part of Pons1.23 ± 0.51
Cerebellar Cortex1.31 ± 0.73
Cerebellar Nuclei1.76 ± 0.78
Claustrum2.34 ± 0.85
Epithalamus1.2 ± 0.77
Frontal Lobe1.31 ± 0.66
Globus Pallidus2.15 ± 0.36
Hypothalamus1.68 ± 0.72
Insula1.3 ± 0.42
Limbic Lobe1.48 ± 0.63
Mesencephalon1.66 ± 0.7
Myelencephalon1.51 ± 0.7
Occipital Lobe1.66 ± 0.79
Parietal Lobe1.64 ± 0.97
Pontine Tegmentum1.56 ± 0.72
Striatum1.59 ± 0.5
Subthalamus1.6 ± 0.63
Temporal Lobe1.37 ± 0.61
Thalamus1.48 ± 0.59
White Matter1.96 ± 0.24
Mouse Brain ISH
Gene Symbol Brain Structure ID Brain Structure Name Express Desity/Level (Meatured by ISH) Express Bar
Suv39h1CBCerebellum5.22
8.78
Suv39h1CTXCerebral cortex8.85
7.64
Suv39h1HIPHippocampal region3.7
3.75
Suv39h1HPFHippocampal formation4.49
4.4
Suv39h1HYHypothalamus7.7
5.9
Suv39h1LSXLateral septal complex2.69
2.15
Suv39h1MBMidbrain8.96
10.54
Suv39h1MYMedulla6.24
7.44
Suv39h1OLFOlfactory bulb5.8
5.27
Suv39h1PPons6.49
7.22
Suv39h1PALPallidum0.55
0.47
Suv39h1RHPRetrohippocampal region6.14
5.56
Suv39h1sAMYStriatum-like amygdalar nuclei1.84
1.58
Suv39h1STRStriatum0.82
0.79
Suv39h1STRdStriatum dorsal region0.51
0.6
Suv39h1STRvStriatum ventral region0.33
0.3
Suv39h1THThalamus2.37
2.34
Peptide Top

Simple Query:


  (e.g. CHD8)

Syndromic Genes

Non-syndromic Genes

AutismKB Statistics

  • Studies: 1,036
  • Genes: 1,379
  • CNVs/SVs: 5,420
  • SNVs/Indels: 11,669
  • de novo Mutations: 5,669
  • Mosaics: 789
  • Linkage Regions: 172
  • Paper Collected: 6/30/2018
  • Last Update: 8/26/2018


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