AutismKB 2.0

Annotation Detail for BST2


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Basic Information Top
Gene Symbol:BST2 ( CD317,TETHERIN )
Gene Full Name: bone marrow stromal cell antigen 2
Band: 19p13.11
Quick LinksEntrez ID:684; OMIM: 600534; Uniprot ID:BST2_HUMAN; ENSEMBL ID: ENSG00000130303; HGNC ID: 1119
Relate to Another Database: SFARIGene; denovo-db
Unigene EST Top
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
embryoid body3 / 7076142
blastocyst13 / 62319208
fetus3 / 5640125
neonate0 / 310970 
infant2 / 2362084
juvenile1 / 5555617
adult170 / 193912187
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
adrenal tumor2 / 12794156
bladder carcinoma0 / 174750 
breast (mammary gland) tumor9 / 9417895
cervical tumor9 / 34366261
chondrosarcoma18 / 82823217
colorectal tumor11 / 11424696
esophageal tumor4 / 17290231
gastrointestinal tumor20 / 119369167
germ cell tumor13 / 26384549
glioma12 / 106883112
head and neck tumor9 / 13630266
kidney tumor20 / 68959290
leukemia3 / 9584231
liver tumor5 / 9635951
lung tumor3 / 10312729
lymphoma11 / 71755153
non-neoplasia4 / 9725041
normal156 / 336030746
ovarian tumor14 / 76682182
pancreatic tumor5 / 10461647
primitive neuroectodermal tumor of the CNS3 / 12568023
prostate cancer2 / 10268019
retinoblastoma0 / 463560 
skin tumor23 / 124949184
soft tissue/muscle tissue tumor15 / 125191119
uterine tumor24 / 90257265
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
adipose tissue3 / 13106228
adrenal gland9 / 33197271
ascites7 / 40015174
bladder0 / 297570 
blood9 / 12347872
bone15 / 71655209
bone marrow2 / 4880140
brain22 / 110098919
cervix10 / 48171207
connective tissue5 / 14925533
ear0 / 162120 
embryonic tissue23 / 215722106
esophagus4 / 20209197
eye9 / 21105442
heart2 / 8962622
intestine16 / 23447268
kidney27 / 211777127
larynx0 / 241450 
liver13 / 20774362
lung18 / 33697453
lymph9 / 44270203
lymph node1 / 9161010
mammary gland13 / 15327184
mouth8 / 67052119
muscle16 / 107715148
nerve2 / 15768126
ovary34 / 102051333
pancreas9 / 21481241
parathyroid0 / 205390 
pharynx2 / 4132848
pituitary gland2 / 16585120
placenta11 / 28082539
prostate11 / 18934558
salivary gland0 / 201550 
skin23 / 210574109
spleen6 / 53952111
stomach14 / 96619144
testis8 / 33044224
thymus3 / 8113136
thyroid0 / 474730 
tonsil2 / 16999117
trachea0 / 524130 
umbilical cord0 / 136800 
uterus44 / 232878188
vascular2 / 5178038
Microarray in BioGPS Top
Select probe  
  • Microarray Platform: GeneAtlas U133A, gcrma
  • Affymatrix Probe ID: 201641_at
Cell line Expression level Expression bar
721_B_lymphoblasts965.35
Adipocyte6.15
AdrenalCortex156.8
Adrenalgland313.25
Amygdala6.3
Appendix9.1
AtrioventricularNode4.75
BDCA4+_DentriticCells624.4
Bonemarrow12.2
BronchialEpithelialCells5.05
CD105+_Endothelial38.9
CD14+_Monocytes580.95
CD19+_BCells(neg._sel.)160.15
CD33+_Myeloid572.3
CD34+254.2
CD4+_Tcells174.65
CD56+_NKCells440.45
CD71+_EarlyErythroid6
CD8+_Tcells167.1
CardiacMyocytes6.85
Caudatenucleus6.05
Cerebellum5.05
CerebellumPeduncles7.25
CiliaryGanglion5.15
CingulateCortex6.45
Colorectaladenocarcinoma6.45
DorsalRootGanglion4.85
FetalThyroid6.15
Fetalbrain6.15
Fetalliver5.75
Fetallung9.8
GlobusPallidus4.85
Heart136.85
Hypothalamus9.1
Kidney8.7
Leukemia_chronicMyelogenousK-56252.75
Leukemia_promyelocytic-HL-60122.9
Leukemialymphoblastic(MOLT-4)12.5
Liver186.95
Lung359.2
Lymphnode86.5
Lymphoma_burkitts(Daudi)466.6
Lymphoma_burkitts(Raji)342.9
MedullaOblongata5.75
OccipitalLobe5.7
OlfactoryBulb14.65
Ovary385.5
Pancreas40.35
PancreaticIslet7.05
ParietalLobe6.7
Pituitary7.65
Placenta152.5
Pons6.05
PrefrontalCortex9.35
Prostate67.65
Salivarygland5.1
SkeletalMuscle7.15
Skin5
SmoothMuscle6.95
Spinalcord11.35
SubthalamicNucleus5.75
SuperiorCervicalGanglion6.95
TemporalLobe5.85
Testis6.45
TestisGermCell5.2
TestisIntersitial5.4
TestisLeydigCell6.65
TestisSeminiferousTubule5.55
Thalamus6.8
Thymus134.2
Thyroid8.25
Tongue6.2
Tonsil12.8
Trachea9.8
TrigeminalGanglion6.75
Uterus69.2
UterusCorpus5.45
WholeBlood65.4
Wholebrain5.85
colon7.1
pineal_day9.34
pineal_night8.36
retina31.525
small_intestine23.5
Allen Brain Atlas Top
Human Whole Brain Microarrayview in Allen Brain Atlas
  • Probe id     Donor id      
  • Probe name: A_23_P39465
  • Donor H0351.2001
  • Sex: Male     Age: 24 years     Race/Ethnicity: African American     Handedness: Left
  • Tissue Receipt Date: 7/29/2009     Serology: Pass      Tissue pH :6.72     Additional Medical Information :History of asthma
  • Postmortem Interval: 23 hours (estimated time of death to time that tissue is frozen)
  • Toxicology: Positive for atropine and caffeine, at levels usually not toxicologically significant
Tissue Expression(mean ± stddev) Expression Bar
Amygdala5.49 ± 0.36
Basal Forebrain5.83 ± 0.47
Basal Part of Pons5.87 ± 0.15
Cerebellar Cortex5.57 ± 0.3
Cerebellar Nuclei6.65 ± 0.38
Claustrum5.34 ± 0.6
Epithalamus6.06 ± 0.69
Frontal Lobe5.94 ± 0.47
Globus Pallidus7.1 ± 0.35
Hypothalamus5.72 ± 0.82
Insula5.99 ± 0.43
Limbic Lobe5.83 ± 0.64
Mesencephalon6.02 ± 0.56
Myelencephalon6.19 ± 0.59
Occipital Lobe6.32 ± 0.68
Parietal Lobe5.69 ± 0.53
Pontine Tegmentum6.13 ± 0.63
Striatum6.97 ± 0.47
Subthalamus6.22 ± 0.09
Temporal Lobe6.02 ± 0.41
Thalamus6.27 ± 0.51
White Matter6.32 ± 0.8
Mouse Brain ISH
Gene Symbol Brain Structure ID Brain Structure Name Express Desity/Level (Meatured by ISH) Express Bar
Bst2CBCerebellum0.95
2.24
Bst2CTXCerebral cortex0.94
1.09
Bst2HIPHippocampal region0.83
1.04
Bst2HPFHippocampal formation1.07
1.13
Bst2HYHypothalamus0.07
0.06
Bst2LSXLateral septal complex0.15
0.42
Bst2MBMidbrain0.28
0.36
Bst2MYMedulla1
1.69
Bst2OLFOlfactory bulb0.82
2
Bst2PPons0.54
0.85
Bst2PALPallidum0.09
0.08
Bst2RHPRetrohippocampal region1.33
0.97
Bst2sAMYStriatum-like amygdalar nuclei0.08
0.27
Bst2STRStriatum0.2
0.29
Bst2STRdStriatum dorsal region0.21
0.33
Bst2STRvStriatum ventral region0.16
0.13
Bst2THThalamus0.32
0.34
Peptide Top
Peptide Name Peptide Lengh Peptide Start Peptide End Peptide Sequence Source
BST2_HUMAN_112 15 112 126 KVEELEGEITTLNHK PRIDE
BST2_HUMAN_140 8 140 147 ENQVLSVR PRIDE
PAp00004614 15 112 126 KVEELEGEITTLNHK Peptide Atlas

Simple Query:


  (e.g. CHD8)

Syndromic Genes

Non-syndromic Genes

AutismKB Statistics

  • Studies: 1,036
  • Genes: 1,379
  • CNVs/SVs: 5,420
  • SNVs/Indels: 11,669
  • de novo Mutations: 5,669
  • Mosaics: 789
  • Linkage Regions: 172
  • Paper Collected: 6/30/2018
  • Last Update: 8/26/2018


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