Annotation Detail for SYT4
Basic Information Top
| Gene Symbol: | SYT4 ( HsT1192,KIAA1342 ) |
|---|---|
| Gene Full Name: | synaptotagmin IV |
| Band: | 18q12.3 |
| Quick Links | Entrez ID:6860; OMIM: 600103; Uniprot ID:SYT4_HUMAN; ENSEMBL ID: ENSG00000132872; HGNC ID: 11512 |
| Relate to Another Database: | SFARIGene; denovo-db |
- Unigene ID: Hs.8059
| Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
|---|---|---|---|
 | |||
| embryoid body | 1 / 70761 | 14 |  |
| blastocyst | 1 / 62319 | 16 | |
| fetus | 132 / 564012 | 234 |  |
| neonate | 0 / 31097 | 0 | |
| infant | 1 / 23620 | 42 | |
| juvenile | 3 / 55556 | 53 |  |
| adult | 60 / 1939121 | 30 | |
| Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
|---|---|---|---|
| |||
| adrenal tumor | 0 / 12794 | 0 | |
| bladder carcinoma | 0 / 17475 | 0 | |
| breast (mammary gland) tumor | 0 / 94178 | 0 | |
| cervical tumor | 0 / 34366 | 0 | |
| chondrosarcoma | 0 / 82823 | 0 | |
| colorectal tumor | 0 / 114246 | 0 | |
| esophageal tumor | 0 / 17290 | 0 | |
| gastrointestinal tumor | 0 / 119369 | 0 | |
| germ cell tumor | 39 / 263845 | 147 | |
| glioma | 0 / 106883 | 0 | |
| head and neck tumor | 0 / 136302 | 0 | |
| kidney tumor | 4 / 68959 | 58 | |
| leukemia | 0 / 95842 | 0 | |
| liver tumor | 0 / 96359 | 0 | |
| lung tumor | 1 / 103127 | 9 |  |
| lymphoma | 0 / 71755 | 0 | |
| non-neoplasia | 0 / 97250 | 0 | |
| normal | 557 / 3360307 | 165 | |
| ovarian tumor | 0 / 76682 | 0 | |
| pancreatic tumor | 0 / 104616 | 0 | |
| primitive neuroectodermal tumor of the CNS | 7 / 125680 | 55 | |
| prostate cancer | 3 / 102680 | 29 | |
| retinoblastoma | 0 / 46356 | 0 | |
| skin tumor | 0 / 124949 | 0 | |
| soft tissue/muscle tissue tumor | 0 / 125191 | 0 | |
| uterine tumor | 0 / 90257 | 0 |
| Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
|---|---|---|---|
| |||
| adipose tissue | 0 / 13106 | 0 | |
| adrenal gland | 1 / 33197 | 30 | |
| ascites | 0 / 40015 | 0 | |
| bladder | 0 / 29757 | 0 | |
| blood | 0 / 123478 | 0 | |
| bone | 5 / 71655 | 69 | |
| bone marrow | 0 / 48801 | 0 | |
| brain | 553 / 1100989 | 502 | |
| cervix | 0 / 48171 | 0 | |
| connective tissue | 0 / 149255 | 0 | |
| ear | 0 / 16212 | 0 | |
| embryonic tissue | 2 / 215722 | 9 | |
| esophagus | 0 / 20209 | 0 | |
| eye | 3 / 211054 | 14 | |
| heart | 0 / 89626 | 0 | |
| intestine | 0 / 234472 | 0 | |
| kidney | 4 / 211777 | 18 | |
| larynx | 0 / 24145 | 0 | |
| liver | 0 / 207743 | 0 | |
| lung | 6 / 336974 | 17 | |
| lymph | 0 / 44270 | 0 | |
| lymph node | 0 / 91610 | 0 | |
| mammary gland | 0 / 153271 | 0 | |
| mouth | 0 / 67052 | 0 | |
| muscle | 7 / 107715 | 64 | |
| nerve | 3 / 15768 | 190 | |
| ovary | 0 / 102051 | 0 | |
| pancreas | 3 / 214812 | 13 | |
| parathyroid | 0 / 20539 | 0 | |
| pharynx | 0 / 41328 | 0 | |
| pituitary gland | 2 / 16585 | 120 | |
| placenta | 0 / 280825 | 0 | |
| prostate | 6 / 189345 | 31 | |
| salivary gland | 0 / 20155 | 0 | |
| skin | 0 / 210574 | 0 | |
| spleen | 0 / 53952 | 0 | |
| stomach | 1 / 96619 | 10 | |
| testis | 31 / 330442 | 93 | |
| thymus | 0 / 81131 | 0 | |
| thyroid | 0 / 47473 | 0 | |
| tonsil | 0 / 16999 | 0 | |
| trachea | 0 / 52413 | 0 | |
| umbilical cord | 0 / 13680 | 0 | |
| uterus | 0 / 232878 | 0 | |
| vascular | 1 / 51780 | 19 | |
Microarray in - Probe name: CUST_10907_PI416261804
- Donor H0351.2001
- Sex: Male Age: 24 years Race/Ethnicity: African American Handedness: Left
- Tissue Receipt Date: 7/29/2009 Serology: Pass Tissue pH :6.72 Additional Medical Information :History of asthma
- Postmortem Interval: 23 hours (estimated time of death to time that tissue is frozen)
- Toxicology: Positive for atropine and caffeine, at levels usually not toxicologically significant
| Tissue | Expression(mean ± stddev) | Expression Bar |
|---|---|---|
| Amygdala | 10.22 ± 0.44 | ![](../"images/bar_3.png"){kind=small}   |
| Basal Forebrain | 9.94 ± 0.33 | |
| Basal Part of Pons | 10.24 ± 0.51 | |
| Cerebellar Cortex | 10.75 ± 0.18 | |
| Cerebellar Nuclei | 9.09 ± 0.65 | |
| Claustrum | 10.78 ± 0.57 | |
| Epithalamus | 9.73 ± 0.53 | |
| Frontal Lobe | 10.28 ± 0.55 | |
| Globus Pallidus | 8.37 ± 0.64 | |
| Hypothalamus | 10.86 ± 0.33 | |
| Insula | 10.27 ± 0.28 | |
| Limbic Lobe | 10.52 ± 0.53 | |
| Mesencephalon | 10.25 ± 0.93 | |
| Myelencephalon | 10.2 ± 0.69 | |
| Occipital Lobe | 10.39 ± 0.47 | |
| Parietal Lobe | 10.1 ± 0.57 | |
| Pontine Tegmentum | 10.15 ± 0.65 | |
| Striatum | 9.93 ± 0.38 | |
| Subthalamus | 10.15 ± 0.76 | |
| Temporal Lobe | 10.18 ± 0.43 | |
| Thalamus | 10.29 ± 0.4 | |
| White Matter | 7.7 ± 0.59 | |
Mouse Brain ISH 
| Gene Symbol | Brain Structure ID | Brain Structure Name | Express Desity/Level (Meatured by ISH) | Express Bar |
|---|---|---|---|---|
| Syt4 | CB | Cerebellum | 0.54 | |
| 0.77 | | |||
| Syt4 | CTX | Cerebral cortex | 1.26 | |
| 1.5 | | |||
| Syt4 | HIP | Hippocampal region | 0.64 | |
| 0.8 | | |||
| Syt4 | HPF | Hippocampal formation | 0.88 | |
| 1 | | |||
| Syt4 | HY | Hypothalamus | 2.24 | |
| 2.58 | | |||
| Syt4 | LSX | Lateral septal complex | 0.06 | |
| 0.05 | | |||
| Syt4 | MB | Midbrain | 1.03 | |
| 1.18 | | |||
| Syt4 | MY | Medulla | 2.96 | |
| 4.97 | | |||
| Syt4 | OLF | Olfactory bulb | 0.81 | |
| 0.8 | | |||
| Syt4 | P | Pons | 1.38 | |
| 2.11 | | |||
| Syt4 | PAL | Pallidum | 0.86 | |
| 1.06 | | |||
| Syt4 | RHP | Retrohippocampal region | 1.26 | |
| 1.23 | | |||
| Syt4 | sAMY | Striatum-like amygdalar nuclei | 1.4 | |
| 1.71 | | |||
| Syt4 | STR | Striatum | 0.25 | |
| 0.3 | | |||
| Syt4 | STRd | Striatum dorsal region | 0.08 | |
| 0.09 | | |||
| Syt4 | STRv | Striatum ventral region | 0.09 | |
| 0.08 | | |||
| Syt4 | TH | Thalamus | 0.92 | |
| 0.92 | |