AutismKB 2.0

Annotation Detail for TAF6


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Basic Information Top
Gene Symbol:TAF6 ( DKFZp781E21155,MGC:8964,TAF(II)70,TAF(II)80,TAF2E,TAFII-70,TAFII-80,TAFII70,TAFII80,TAFII85 )
Gene Full Name: TAF6 RNA polymerase II, TATA box binding protein (TBP)-associated factor, 80kDa
Band: 7q22.1
Quick LinksEntrez ID:6878; OMIM: 602955; Uniprot ID:TAF6_HUMAN; ENSEMBL ID: ENSG00000106290; HGNC ID: 11540
Relate to Another Database: SFARIGene; denovo-db
Unigene EST Top
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
embryoid body0 / 707610 
blastocyst4 / 6231964
fetus26 / 56401246
neonate1 / 3109732
infant1 / 2362042
juvenile5 / 5555689
adult117 / 193912160
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
adrenal tumor0 / 127940 
bladder carcinoma2 / 17475114
breast (mammary gland) tumor11 / 94178116
cervical tumor1 / 3436629
chondrosarcoma1 / 8282312
colorectal tumor4 / 11424635
esophageal tumor3 / 17290173
gastrointestinal tumor4 / 11936933
germ cell tumor25 / 26384594
glioma10 / 10688393
head and neck tumor26 / 136302190
kidney tumor6 / 6895987
leukemia0 / 958420 
liver tumor3 / 9635931
lung tumor6 / 10312758
lymphoma3 / 7175541
non-neoplasia5 / 9725051
normal146 / 336030743
ovarian tumor2 / 7668226
pancreatic tumor5 / 10461647
primitive neuroectodermal tumor of the CNS18 / 125680143
prostate cancer8 / 10268077
retinoblastoma4 / 4635686
skin tumor10 / 12494980
soft tissue/muscle tissue tumor15 / 125191119
uterine tumor5 / 9025755
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
adipose tissue1 / 1310676
adrenal gland1 / 3319730
ascites1 / 4001524
bladder3 / 29757100
blood3 / 12347824
bone0 / 716550 
bone marrow0 / 488010 
brain77 / 110098969
cervix1 / 4817120
connective tissue4 / 14925526
ear0 / 162120 
embryonic tissue8 / 21572237
esophagus4 / 20209197
eye7 / 21105433
heart1 / 8962611
intestine11 / 23447246
kidney13 / 21177761
larynx2 / 2414582
liver3 / 20774314
lung10 / 33697429
lymph0 / 442700 
lymph node1 / 9161010
mammary gland12 / 15327178
mouth10 / 67052149
muscle2 / 10771518
nerve0 / 157680 
ovary3 / 10205129
pancreas5 / 21481223
parathyroid0 / 205390 
pharynx0 / 413280 
pituitary gland0 / 165850 
placenta16 / 28082556
prostate10 / 18934552
salivary gland5 / 20155248
skin12 / 21057456
spleen5 / 5395292
stomach1 / 9661910
testis20 / 33044260
thymus6 / 8113173
thyroid10 / 47473210
tonsil0 / 169990 
trachea0 / 524130 
umbilical cord0 / 136800 
uterus20 / 23287885
vascular5 / 5178096
Microarray in BioGPS Top
Select probe  
  • Microarray Platform: GeneAtlas U133A, gcrma
  • Affymatrix Probe ID: 203572_s_at
Cell line Expression level Expression bar
721_B_lymphoblasts293.95
Adipocyte131.05
AdrenalCortex159.35
Adrenalgland143.2
Amygdala255.7
Appendix149.5
AtrioventricularNode92.25
BDCA4+_DentriticCells150.2
Bonemarrow132.65
BronchialEpithelialCells129.25
CD105+_Endothelial256.55
CD14+_Monocytes160.7
CD19+_BCells(neg._sel.)214.5
CD33+_Myeloid141.4
CD34+246.55
CD4+_Tcells209.35
CD56+_NKCells171.9
CD71+_EarlyErythroid128.35
CD8+_Tcells141.05
CardiacMyocytes125
Caudatenucleus147.95
Cerebellum206.55
CerebellumPeduncles167.45
CiliaryGanglion70.95
CingulateCortex300.55
Colorectaladenocarcinoma769.05
DorsalRootGanglion98.45
FetalThyroid149.3
Fetalbrain138.55
Fetalliver101.6
Fetallung97.8
GlobusPallidus166.2
Heart209.5
Hypothalamus206.95
Kidney133.9
Leukemia_chronicMyelogenousK-562257.3
Leukemia_promyelocytic-HL-60138.25
Leukemialymphoblastic(MOLT-4)244.7
Liver162.8
Lung358.2
Lymphnode106.55
Lymphoma_burkitts(Daudi)219.55
Lymphoma_burkitts(Raji)533.9
MedullaOblongata133.1
OccipitalLobe142.85
OlfactoryBulb143.05
Ovary90.05
Pancreas77.25
PancreaticIslet134.8
ParietalLobe172
Pituitary222.55
Placenta200.4
Pons122.9
PrefrontalCortex329.95
Prostate294.15
Salivarygland79.15
SkeletalMuscle150
Skin99.05
SmoothMuscle228.8
Spinalcord146.25
SubthalamicNucleus149.35
SuperiorCervicalGanglion182.4
TemporalLobe219.7
Testis243.65
TestisGermCell261.4
TestisIntersitial160.5
TestisLeydigCell159.05
TestisSeminiferousTubule211.3
Thalamus125.1
Thymus193.95
Thyroid342.85
Tongue128.65
Tonsil122.75
Trachea93.05
TrigeminalGanglion157.05
Uterus207.45
UterusCorpus92.2
WholeBlood160.75
Wholebrain179.55
colon153.55
pineal_day188.24
pineal_night151.24
retina205.55
small_intestine155.95
Allen Brain Atlas Top
Human Whole Brain Microarrayview in Allen Brain Atlas
  • Probe id     Donor id      
  • Probe name: CUST_10305_PI416261804
  • Donor H0351.2001
  • Sex: Male     Age: 24 years     Race/Ethnicity: African American     Handedness: Left
  • Tissue Receipt Date: 7/29/2009     Serology: Pass      Tissue pH :6.72     Additional Medical Information :History of asthma
  • Postmortem Interval: 23 hours (estimated time of death to time that tissue is frozen)
  • Toxicology: Positive for atropine and caffeine, at levels usually not toxicologically significant
Tissue Expression(mean ± stddev) Expression Bar
Amygdala2.7 ± 0.95
Basal Forebrain1.95 ± 0.24
Basal Part of Pons2.17 ± 0.48
Cerebellar Cortex2.53 ± 0.64
Cerebellar Nuclei2.42 ± 0.71
Claustrum2.58 ± 0.57
Epithalamus1.9 ± 0.78
Frontal Lobe2.44 ± 0.69
Globus Pallidus2.04 ± 0.67
Hypothalamus2.24 ± 0.63
Insula2.35 ± 0.69
Limbic Lobe2.23 ± 0.65
Mesencephalon2.38 ± 0.73
Myelencephalon2.3 ± 0.69
Occipital Lobe2.1 ± 0.68
Parietal Lobe2.22 ± 0.73
Pontine Tegmentum2.32 ± 0.71
Striatum1.91 ± 0.7
Subthalamus2.32 ± 0.85
Temporal Lobe2.38 ± 0.69
Thalamus2.18 ± 0.68
White Matter2.61 ± 2.11
Mouse Brain ISH
Gene Symbol Brain Structure ID Brain Structure Name Express Desity/Level (Meatured by ISH) Express Bar
Taf6CBCerebellum38.13
49.96
Taf6CTXCerebral cortex67.81
48.75
Taf6HIPHippocampal region42.83
53.45
Taf6HPFHippocampal formation47.63
50.68
Taf6HYHypothalamus44.39
34.6
Taf6LSXLateral septal complex52.95
36.91
Taf6MBMidbrain33.79
29.05
Taf6MYMedulla39.15
38.62
Taf6OLFOlfactory bulb73.29
63.52
Taf6PPons34.68
32.64
Taf6PALPallidum41.46
34.59
Taf6RHPRetrohippocampal region58.29
47.48
Taf6sAMYStriatum-like amygdalar nuclei45.22
30.69
Taf6STRStriatum42.46
30.12
Taf6STRdStriatum dorsal region39.49
28.81
Taf6STRvStriatum ventral region46.37
31.04
Taf6THThalamus55.78
46.33
Peptide Top
Peptide Name Peptide Lengh Peptide Start Peptide End Peptide Sequence Source
PAp00010213 29 619 647 GGPTSHPSPVPPPASSPSPLSGSALCGGK Peptide Atlas

Simple Query:


  (e.g. CHD8)

Syndromic Genes

Non-syndromic Genes

AutismKB Statistics

  • Studies: 1,036
  • Genes: 1,379
  • CNVs/SVs: 5,420
  • SNVs/Indels: 11,669
  • de novo Mutations: 5,669
  • Mosaics: 789
  • Linkage Regions: 172
  • Paper Collected: 6/30/2018
  • Last Update: 8/26/2018


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