AutismKB 2.0

Annotation Detail for TARBP1


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Basic Information Top
Gene Symbol:TARBP1 ( FLJ30482,TRM3,TRP-185,TRP185 )
Gene Full Name: TAR (HIV-1) RNA binding protein 1
Band: 1q42.2
Quick LinksEntrez ID:6894; OMIM: 605052; Uniprot ID:TARB1_HUMAN; ENSEMBL ID: ENSG00000059588; HGNC ID: 11568
Relate to Another Database: SFARIGene; denovo-db
Unigene EST Top
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
embryoid body2 / 7076128
blastocyst8 / 62319128
fetus46 / 56401281
neonate1 / 3109732
infant0 / 236200 
juvenile0 / 555560 
adult83 / 193912142
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
adrenal tumor1 / 1279478
bladder carcinoma2 / 17475114
breast (mammary gland) tumor2 / 9417821
cervical tumor1 / 3436629
chondrosarcoma2 / 8282324
colorectal tumor5 / 11424643
esophageal tumor2 / 17290115
gastrointestinal tumor13 / 119369108
germ cell tumor10 / 26384537
glioma2 / 10688318
head and neck tumor3 / 13630222
kidney tumor0 / 689590 
leukemia1 / 9584210
liver tumor7 / 9635972
lung tumor2 / 10312719
lymphoma1 / 7175513
non-neoplasia4 / 9725041
normal153 / 336030745
ovarian tumor3 / 7668239
pancreatic tumor2 / 10461619
primitive neuroectodermal tumor of the CNS0 / 1256800 
prostate cancer3 / 10268029
retinoblastoma0 / 463560 
skin tumor3 / 12494924
soft tissue/muscle tissue tumor6 / 12519147
uterine tumor20 / 90257221
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
adipose tissue0 / 131060 
adrenal gland5 / 33197150
ascites2 / 4001549
bladder3 / 29757100
blood3 / 12347824
bone0 / 716550 
bone marrow2 / 4880140
brain32 / 110098929
cervix1 / 4817120
connective tissue9 / 14925560
ear0 / 162120 
embryonic tissue23 / 215722106
esophagus2 / 2020998
eye5 / 21105423
heart3 / 8962633
intestine11 / 23447246
kidney4 / 21177718
larynx0 / 241450 
liver9 / 20774343
lung21 / 33697462
lymph0 / 442700 
lymph node6 / 9161065
mammary gland6 / 15327139
mouth1 / 6705214
muscle5 / 10771546
nerve0 / 157680 
ovary4 / 10205139
pancreas2 / 2148129
parathyroid1 / 2053948
pharynx1 / 4132824
pituitary gland0 / 165850 
placenta4 / 28082514
prostate3 / 18934515
salivary gland0 / 201550 
skin5 / 21057423
spleen1 / 5395218
stomach13 / 96619134
testis13 / 33044239
thymus1 / 8113112
thyroid2 / 4747342
tonsil0 / 169990 
trachea0 / 524130 
umbilical cord0 / 136800 
uterus25 / 232878107
vascular3 / 5178057
Microarray in BioGPS Top
Select probe  
  • Microarray Platform: GeneAtlas U133A, gcrma
  • Affymatrix Probe ID: 202813_at
Cell line Expression level Expression bar
721_B_lymphoblasts70.3
Adipocyte22.25
AdrenalCortex29.1
Adrenalgland16.5
Amygdala74.55
Appendix27.65
AtrioventricularNode20.9
BDCA4+_DentriticCells368.75
Bonemarrow22.25
BronchialEpithelialCells18.35
CD105+_Endothelial109.75
CD14+_Monocytes15.2
CD19+_BCells(neg._sel.)53.05
CD33+_Myeloid86.45
CD34+622.35
CD4+_Tcells145.95
CD56+_NKCells46.95
CD71+_EarlyErythroid20.1
CD8+_Tcells136.4
CardiacMyocytes35.35
Caudatenucleus32.05
Cerebellum20.15
CerebellumPeduncles30.35
CiliaryGanglion17.8
CingulateCortex34.15
Colorectaladenocarcinoma26.9
DorsalRootGanglion26.8
FetalThyroid23.15
Fetalbrain57.25
Fetalliver21.35
Fetallung18.9
GlobusPallidus32
Heart32.2
Hypothalamus44.75
Kidney18.95
Leukemia_chronicMyelogenousK-56228.9
Leukemia_promyelocytic-HL-6042.7
Leukemialymphoblastic(MOLT-4)48.05
Liver32.3
Lung22.95
Lymphnode49.65
Lymphoma_burkitts(Daudi)38.6
Lymphoma_burkitts(Raji)41.85
MedullaOblongata27.7
OccipitalLobe31.4
OlfactoryBulb20.15
Ovary16.9
Pancreas18.95
PancreaticIslet25.25
ParietalLobe33.15
Pituitary50.7
Placenta22.2
Pons22.35
PrefrontalCortex75.4
Prostate29.7
Salivarygland29.75
SkeletalMuscle39.8
Skin20.95
SmoothMuscle24.6
Spinalcord31.25
SubthalamicNucleus29.9
SuperiorCervicalGanglion37.85
TemporalLobe24.15
Testis21.75
TestisGermCell19.25
TestisIntersitial20.85
TestisLeydigCell24.5
TestisSeminiferousTubule21.05
Thalamus23.45
Thymus22.95
Thyroid30.65
Tongue33.3
Tonsil28
Trachea23.2
TrigeminalGanglion27.15
Uterus17.85
UterusCorpus25.8
WholeBlood19.9
Wholebrain18.4
colon24.2
pineal_day50.42
pineal_night37.06
retina32.2
small_intestine18.7
Allen Brain Atlas Top
Human Whole Brain Microarrayview in Allen Brain Atlas
  • Probe id     Donor id      
  • Probe name: CUST_11135_PI416261804
  • Donor H0351.2001
  • Sex: Male     Age: 24 years     Race/Ethnicity: African American     Handedness: Left
  • Tissue Receipt Date: 7/29/2009     Serology: Pass      Tissue pH :6.72     Additional Medical Information :History of asthma
  • Postmortem Interval: 23 hours (estimated time of death to time that tissue is frozen)
  • Toxicology: Positive for atropine and caffeine, at levels usually not toxicologically significant
Tissue Expression(mean ± stddev) Expression Bar
Amygdala6.67 ± 0.42
Basal Forebrain6.36 ± 0.19
Basal Part of Pons6.16 ± 0.34
Cerebellar Cortex6.39 ± 0.35
Cerebellar Nuclei5.41 ± 0.51
Claustrum6.39 ± 0.36
Epithalamus6 ± 0.37
Frontal Lobe5.98 ± 0.46
Globus Pallidus5.26 ± 0.41
Hypothalamus6.02 ± 0.62
Insula6.27 ± 0.31
Limbic Lobe6.52 ± 0.52
Mesencephalon6.24 ± 0.47
Myelencephalon6.13 ± 0.46
Occipital Lobe6.71 ± 0.53
Parietal Lobe6.24 ± 0.41
Pontine Tegmentum6.15 ± 0.56
Striatum6.42 ± 0.36
Subthalamus5.29 ± 0.14
Temporal Lobe6.26 ± 0.44
Thalamus5.85 ± 0.38
White Matter5.48 ± 0.64
Mouse Brain ISH
Peptide Top

Simple Query:


  (e.g. CHD8)

Syndromic Genes

Non-syndromic Genes

AutismKB Statistics

  • Studies: 1,036
  • Genes: 1,379
  • CNVs/SVs: 5,420
  • SNVs/Indels: 11,669
  • de novo Mutations: 5,669
  • Mosaics: 789
  • Linkage Regions: 172
  • Paper Collected: 6/30/2018
  • Last Update: 8/26/2018


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