AutismKB 2.0

Annotation Detail for TCF20


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Basic Information Top
Gene Symbol:TCF20 ( AR1,KIAA0292,SPBP )
Gene Full Name: transcription factor 20 (AR1)
Band: 22q13.2
Quick LinksEntrez ID:6942; OMIM: 603107; Uniprot ID:TCF20_HUMAN; ENSEMBL ID: ENSG00000100207; HGNC ID: 11631
Relate to Another Database: SFARIGene; denovo-db
Unigene EST Top
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
embryoid body4 / 7076156
blastocyst2 / 6231932
fetus15 / 56401226
neonate0 / 310970 
infant0 / 236200 
juvenile0 / 555560 
adult57 / 193912129
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
adrenal tumor0 / 127940 
bladder carcinoma1 / 1747557
breast (mammary gland) tumor2 / 9417821
cervical tumor2 / 3436658
chondrosarcoma1 / 8282312
colorectal tumor7 / 11424661
esophageal tumor0 / 172900 
gastrointestinal tumor3 / 11936925
germ cell tumor12 / 26384545
glioma3 / 10688328
head and neck tumor7 / 13630251
kidney tumor0 / 689590 
leukemia4 / 9584241
liver tumor0 / 963590 
lung tumor4 / 10312738
lymphoma3 / 7175541
non-neoplasia0 / 972500 
normal55 / 336030716
ovarian tumor1 / 7668213
pancreatic tumor0 / 1046160 
primitive neuroectodermal tumor of the CNS0 / 1256800 
prostate cancer0 / 1026800 
retinoblastoma0 / 463560 
skin tumor3 / 12494924
soft tissue/muscle tissue tumor0 / 1251910 
uterine tumor4 / 9025744
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
adipose tissue0 / 131060 
adrenal gland0 / 331970 
ascites0 / 400150 
bladder3 / 29757100
blood4 / 12347832
bone0 / 716550 
bone marrow0 / 488010 
brain14 / 110098912
cervix2 / 4817141
connective tissue1 / 1492556
ear0 / 162120 
embryonic tissue7 / 21572232
esophagus0 / 202090 
eye2 / 2110549
heart0 / 896260 
intestine13 / 23447255
kidney3 / 21177714
larynx2 / 2414582
liver3 / 20774314
lung10 / 33697429
lymph3 / 4427067
lymph node1 / 9161010
mammary gland3 / 15327119
mouth1 / 6705214
muscle0 / 1077150 
nerve0 / 157680 
ovary2 / 10205119
pancreas5 / 21481223
parathyroid0 / 205390 
pharynx2 / 4132848
pituitary gland0 / 165850 
placenta2 / 2808257
prostate2 / 18934510
salivary gland0 / 201550 
skin6 / 21057428
spleen0 / 539520 
stomach3 / 9661931
testis6 / 33044218
thymus0 / 811310 
thyroid2 / 4747342
tonsil0 / 169990 
trachea0 / 524130 
umbilical cord0 / 136800 
uterus4 / 23287817
vascular0 / 517800 
Microarray in BioGPS Top
Select probe  
  • Microarray Platform: GeneAtlas U133A, gcrma
  • Affymatrix Probe ID: 212931_at
Cell line Expression level Expression bar
721_B_lymphoblasts123.6
Adipocyte36.55
AdrenalCortex41.35
Adrenalgland41.95
Amygdala55
Appendix34.65
AtrioventricularNode33
BDCA4+_DentriticCells106.75
Bonemarrow48.85
BronchialEpithelialCells55.5
CD105+_Endothelial144.85
CD14+_Monocytes110.75
CD19+_BCells(neg._sel.)186.6
CD33+_Myeloid96.3
CD34+195.35
CD4+_Tcells217.65
CD56+_NKCells207.15
CD71+_EarlyErythroid66.8
CD8+_Tcells131.95
CardiacMyocytes51.4
Caudatenucleus31.55
Cerebellum31.4
CerebellumPeduncles61.95
CiliaryGanglion28.7
CingulateCortex46.3
Colorectaladenocarcinoma72.15
DorsalRootGanglion26.75
FetalThyroid73
Fetalbrain113.35
Fetalliver46.05
Fetallung34.05
GlobusPallidus39.85
Heart69.3
Hypothalamus45.65
Kidney21.65
Leukemia_chronicMyelogenousK-56248.45
Leukemia_promyelocytic-HL-6064.6
Leukemialymphoblastic(MOLT-4)62.4
Liver60.55
Lung45.4
Lymphnode48.7
Lymphoma_burkitts(Daudi)90.95
Lymphoma_burkitts(Raji)114.2
MedullaOblongata32.45
OccipitalLobe63.8
OlfactoryBulb29.9
Ovary32.9
Pancreas67.15
PancreaticIslet56.25
ParietalLobe56.85
Pituitary69.3
Placenta39.95
Pons37.55
PrefrontalCortex137.15
Prostate155.05
Salivarygland26.3
SkeletalMuscle55.35
Skin29.3
SmoothMuscle45.8
Spinalcord39.25
SubthalamicNucleus37.95
SuperiorCervicalGanglion41.25
TemporalLobe44.05
Testis38
TestisGermCell37.15
TestisIntersitial32.45
TestisLeydigCell54.15
TestisSeminiferousTubule72.6
Thalamus36.65
Thymus69.05
Thyroid58.15
Tongue76.3
Tonsil54.85
Trachea40.75
TrigeminalGanglion36.35
Uterus60.75
UterusCorpus32.65
WholeBlood132.15
Wholebrain67.1
colon48.55
pineal_day112.94
pineal_night106.84
retina41.55
small_intestine43.95
Allen Brain Atlas Top
Human Whole Brain Microarrayview in Allen Brain Atlas
  • Probe id     Donor id      
  • Probe name: CUST_10000_PI416261804
  • Donor H0351.2001
  • Sex: Male     Age: 24 years     Race/Ethnicity: African American     Handedness: Left
  • Tissue Receipt Date: 7/29/2009     Serology: Pass      Tissue pH :6.72     Additional Medical Information :History of asthma
  • Postmortem Interval: 23 hours (estimated time of death to time that tissue is frozen)
  • Toxicology: Positive for atropine and caffeine, at levels usually not toxicologically significant
Tissue Expression(mean ± stddev) Expression Bar
Amygdala4.2 ± 0.59
Basal Forebrain3.93 ± 0.33
Basal Part of Pons3.96 ± 0.38
Cerebellar Cortex4.13 ± 0.49
Cerebellar Nuclei3.68 ± 0.42
Claustrum3.76 ± 0.77
Epithalamus3.87 ± 0.69
Frontal Lobe4.09 ± 0.49
Globus Pallidus3.69 ± 0.53
Hypothalamus4.13 ± 0.38
Insula4.27 ± 0.42
Limbic Lobe4.41 ± 0.45
Mesencephalon4.21 ± 0.59
Myelencephalon4.08 ± 0.44
Occipital Lobe4.03 ± 0.53
Parietal Lobe4.19 ± 0.47
Pontine Tegmentum4.11 ± 0.52
Striatum4.32 ± 0.5
Subthalamus4.18 ± 0.33
Temporal Lobe4.28 ± 0.51
Thalamus3.87 ± 0.51
White Matter3.87 ± 0.5
Mouse Brain ISH
Gene Symbol Brain Structure ID Brain Structure Name Express Desity/Level (Meatured by ISH) Express Bar
Tcf20CBCerebellum100
100
Tcf20CTXCerebral cortex100
100
Tcf20HIPHippocampal region100
100
Tcf20HPFHippocampal formation100
100
Tcf20HYHypothalamus100
100
Tcf20LSXLateral septal complex100
100
Tcf20MBMidbrain100
100
Tcf20MYMedulla100
100
Tcf20OLFOlfactory bulb100
100
Tcf20PPons97.27
100
Tcf20PALPallidum100
100
Tcf20RHPRetrohippocampal region100
100
Tcf20sAMYStriatum-like amygdalar nuclei100
100
Tcf20STRStriatum100
100
Tcf20STRdStriatum dorsal region100
100
Tcf20STRvStriatum ventral region100
100
Tcf20THThalamus100
100
Peptide Top
Peptide Name Peptide Lengh Peptide Start Peptide End Peptide Sequence Source
PAp00010552 19 494 512 KADSCTNSEGSSQPEEQLK Peptide Atlas

Simple Query:


  (e.g. CHD8)

Syndromic Genes

Non-syndromic Genes

AutismKB Statistics

  • Studies: 1,036
  • Genes: 1,379
  • CNVs/SVs: 5,420
  • SNVs/Indels: 11,669
  • de novo Mutations: 5,669
  • Mosaics: 789
  • Linkage Regions: 172
  • Paper Collected: 6/30/2018
  • Last Update: 8/26/2018


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