AutismKB 2.0

Annotation Detail for TEF


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Basic Information Top
Gene Symbol:TEF ( KIAA1655 )
Gene Full Name: thyrotrophic embryonic factor
Band: 22q13.2
Quick LinksEntrez ID:7008; OMIM: 188595; Uniprot ID:TEF_HUMAN; ENSEMBL ID: ENSG00000167074; HGNC ID: 11722
Relate to Another Database: SFARIGene; denovo-db
Unigene EST Top
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
embryoid body1 / 7076114
blastocyst3 / 6231948
fetus6 / 56401210
neonate1 / 3109732
infant4 / 23620169
juvenile1 / 5555617
adult50 / 193912125
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
adrenal tumor0 / 127940 
bladder carcinoma0 / 174750 
breast (mammary gland) tumor1 / 9417810
cervical tumor1 / 3436629
chondrosarcoma2 / 8282324
colorectal tumor3 / 11424626
esophageal tumor1 / 1729057
gastrointestinal tumor0 / 1193690 
germ cell tumor19 / 26384572
glioma4 / 10688337
head and neck tumor7 / 13630251
kidney tumor4 / 6895958
leukemia0 / 958420 
liver tumor1 / 9635910
lung tumor2 / 10312719
lymphoma1 / 7175513
non-neoplasia3 / 9725030
normal195 / 336030758
ovarian tumor2 / 7668226
pancreatic tumor3 / 10461628
primitive neuroectodermal tumor of the CNS9 / 12568071
prostate cancer2 / 10268019
retinoblastoma3 / 4635664
skin tumor11 / 12494988
soft tissue/muscle tissue tumor13 / 125191103
uterine tumor0 / 902570 
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
adipose tissue0 / 131060 
adrenal gland0 / 331970 
ascites0 / 400150 
bladder0 / 297570 
blood0 / 1234780 
bone1 / 7165513
bone marrow0 / 488010 
brain163 / 1100989148
cervix1 / 4817120
connective tissue2 / 14925513
ear1 / 1621261
embryonic tissue6 / 21572227
esophagus1 / 2020949
eye15 / 21105471
heart0 / 896260 
intestine4 / 23447217
kidney11 / 21177751
larynx1 / 2414541
liver3 / 20774314
lung10 / 33697429
lymph0 / 442700 
lymph node2 / 9161021
mammary gland2 / 15327113
mouth5 / 6705274
muscle7 / 10771564
nerve1 / 1576863
ovary16 / 102051156
pancreas6 / 21481227
parathyroid1 / 2053948
pharynx0 / 413280 
pituitary gland0 / 165850 
placenta3 / 28082510
prostate8 / 18934542
salivary gland1 / 2015549
skin14 / 21057466
spleen3 / 5395255
stomach0 / 966190 
testis11 / 33044233
thymus3 / 8113136
thyroid1 / 4747321
tonsil0 / 169990 
trachea5 / 5241395
umbilical cord0 / 136800 
uterus15 / 23287864
vascular0 / 517800 
Microarray in BioGPS Top
Select probe  
  • Microarray Platform: GeneAtlas U133A, gcrma
  • Affymatrix Probe ID: 210167_s_at
Cell line Expression level Expression bar
721_B_lymphoblasts7
Adipocyte6.1
AdrenalCortex7.95
Adrenalgland5.5
Amygdala6.35
Appendix7.15
AtrioventricularNode5.7
BDCA4+_DentriticCells6.15
Bonemarrow6.65
BronchialEpithelialCells6
CD105+_Endothelial6.1
CD14+_Monocytes6.5
CD19+_BCells(neg._sel.)6.3
CD33+_Myeloid7.6
CD34+7.35
CD4+_Tcells6.35
CD56+_NKCells6.9
CD71+_EarlyErythroid5.9
CD8+_Tcells5.6
CardiacMyocytes9.65
Caudatenucleus5.6
Cerebellum5.85
CerebellumPeduncles9.2
CiliaryGanglion5
CingulateCortex6.55
Colorectaladenocarcinoma6.25
DorsalRootGanglion5.3
FetalThyroid6.35
Fetalbrain6.05
Fetalliver5.5
Fetallung4.85
GlobusPallidus4.8
Heart9.4
Hypothalamus6.55
Kidney5.5
Leukemia_chronicMyelogenousK-5625.6
Leukemia_promyelocytic-HL-605.5
Leukemialymphoblastic(MOLT-4)5
Liver9.1
Lung6.75
Lymphnode5.15
Lymphoma_burkitts(Daudi)8.2
Lymphoma_burkitts(Raji)9.35
MedullaOblongata5.6
OccipitalLobe5.55
OlfactoryBulb4.85
Ovary4.45
Pancreas5.15
PancreaticIslet6.65
ParietalLobe7.65
Pituitary8.5
Placenta6.15
Pons6.15
PrefrontalCortex7.35
Prostate7.15
Salivarygland5.15
SkeletalMuscle8.45
Skin5.45
SmoothMuscle6.95
Spinalcord6.6
SubthalamicNucleus5.85
SuperiorCervicalGanglion8.45
TemporalLobe5.85
Testis5.6
TestisGermCell5.15
TestisIntersitial6.35
TestisLeydigCell7.85
TestisSeminiferousTubule5.3
Thalamus6.5
Thymus4.7
Thyroid7.55
Tongue6.65
Tonsil6.15
Trachea5.2
TrigeminalGanglion7.15
Uterus4.95
UterusCorpus6.1
WholeBlood6.75
Wholebrain5.55
colon6.3
pineal_day7.56
pineal_night7.46
retina7.525
small_intestine6
Allen Brain Atlas Top
Human Whole Brain Microarrayview in Allen Brain Atlas
  • Probe id     Donor id      
  • Probe name: A_24_P151582
  • Donor H0351.2001
  • Sex: Male     Age: 24 years     Race/Ethnicity: African American     Handedness: Left
  • Tissue Receipt Date: 7/29/2009     Serology: Pass      Tissue pH :6.72     Additional Medical Information :History of asthma
  • Postmortem Interval: 23 hours (estimated time of death to time that tissue is frozen)
  • Toxicology: Positive for atropine and caffeine, at levels usually not toxicologically significant
Tissue Expression(mean ± stddev) Expression Bar
Amygdala7 ± 0.61
Basal Forebrain6.62 ± 0.23
Basal Part of Pons7.01 ± 0.64
Cerebellar Cortex6.7 ± 0.53
Cerebellar Nuclei6.16 ± 0.32
Claustrum7.17 ± 0.53
Epithalamus6.19 ± 0.57
Frontal Lobe6.61 ± 0.47
Globus Pallidus5.82 ± 0.54
Hypothalamus6.15 ± 0.74
Insula6.85 ± 0.43
Limbic Lobe6.92 ± 0.55
Mesencephalon6.66 ± 0.6
Myelencephalon6.72 ± 0.57
Occipital Lobe6.4 ± 0.57
Parietal Lobe6.69 ± 0.47
Pontine Tegmentum6.6 ± 0.59
Striatum6.98 ± 0.38
Subthalamus7.05 ± 0.49
Temporal Lobe7.01 ± 0.53
Thalamus6.58 ± 0.39
White Matter5.42 ± 0.27
Mouse Brain ISH
Gene Symbol Brain Structure ID Brain Structure Name Express Desity/Level (Meatured by ISH) Express Bar
TefCBCerebellum17.42
37.8
TefCTXCerebral cortex100
100
TefHIPHippocampal region100
100
TefHPFHippocampal formation100
100
TefHYHypothalamus78.51
88.29
TefLSXLateral septal complex59.67
61.02
TefMBMidbrain68.2
86.91
TefMYMedulla7.95
12.89
TefOLFOlfactory bulb59.72
87.21
TefPPons18.01
28.05
TefPALPallidum67.18
81.29
TefRHPRetrohippocampal region100
100
TefsAMYStriatum-like amygdalar nuclei100
100
TefSTRStriatum100
100
TefSTRdStriatum dorsal region100
100
TefSTRvStriatum ventral region100
100
TefTHThalamus80.39
92.84
Peptide Top

Simple Query:


  (e.g. CHD8)

Syndromic Genes

Non-syndromic Genes

AutismKB Statistics

  • Studies: 1,036
  • Genes: 1,379
  • CNVs/SVs: 5,420
  • SNVs/Indels: 11,669
  • de novo Mutations: 5,669
  • Mosaics: 789
  • Linkage Regions: 172
  • Paper Collected: 6/30/2018
  • Last Update: 8/26/2018


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