AutismKB 2.0

Annotation Detail for TF


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Basic Information Top
Gene Symbol:TF ( DKFZp781D0156,PRO1557,PRO2086 )
Gene Full Name: transferrin
Band: 3q22.1
Quick LinksEntrez ID:7018; OMIM: 190000; Uniprot ID:TRFE_HUMAN; ENSEMBL ID: ENSG00000091513; HGNC ID: 11740
Relate to Another Database: SFARIGene; denovo-db
Unigene EST Top
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
embryoid body0 / 707610 
blastocyst0 / 623190 
fetus174 / 564012308
neonate0 / 310970 
infant1 / 2362042
juvenile40 / 55556719
adult607 / 1939121313
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
adrenal tumor0 / 127940 
bladder carcinoma0 / 174750 
breast (mammary gland) tumor0 / 941780 
cervical tumor0 / 343660 
chondrosarcoma4 / 8282348
colorectal tumor0 / 1142460 
esophageal tumor0 / 172900 
gastrointestinal tumor1 / 1193698
germ cell tumor8 / 26384530
glioma9 / 10688384
head and neck tumor3 / 13630222
kidney tumor135 / 689591957
leukemia25 / 95842260
liver tumor326 / 963593383
lung tumor1 / 1031279
lymphoma1 / 7175513
non-neoplasia48 / 97250493
normal2355 / 3360307700
ovarian tumor0 / 766820 
pancreatic tumor0 / 1046160 
primitive neuroectodermal tumor of the CNS0 / 1256800 
prostate cancer0 / 1026800 
retinoblastoma0 / 463560 
skin tumor1 / 1249498
soft tissue/muscle tissue tumor0 / 1251910 
uterine tumor0 / 902570 
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
adipose tissue6 / 13106457
adrenal gland0 / 331970 
ascites0 / 400150 
bladder0 / 297570 
blood25 / 123478202
bone0 / 716550 
bone marrow0 / 488010 
brain1597 / 11009891450
cervix0 / 481710 
connective tissue9 / 14925560
ear3 / 16212185
embryonic tissue1 / 2157224
esophagus0 / 202090 
eye324 / 2110541535
heart17 / 89626189
intestine4 / 23447217
kidney135 / 211777637
larynx2 / 2414582
liver698 / 2077433359
lung13 / 33697438
lymph0 / 442700 
lymph node1 / 9161010
mammary gland30 / 153271195
mouth1 / 6705214
muscle8 / 10771574
nerve5 / 15768317
ovary0 / 1020510 
pancreas5 / 21481223
parathyroid0 / 205390 
pharynx10 / 41328241
pituitary gland1 / 1658560
placenta2 / 2808257
prostate8 / 18934542
salivary gland1 / 2015549
skin2 / 2105749
spleen6 / 53952111
stomach1 / 9661910
testis13 / 33044239
thymus0 / 811310 
thyroid0 / 474730 
tonsil0 / 169990 
trachea8 / 52413152
umbilical cord0 / 136800 
uterus0 / 2328780 
vascular0 / 517800 
Microarray in BioGPS Top
Select probe  
  • Microarray Platform: GeneAtlas U133A, gcrma
  • Affymatrix Probe ID: 203400_s_at
Cell line Expression level Expression bar
721_B_lymphoblasts5.5
Adipocyte1098.9
AdrenalCortex5
Adrenalgland4
Amygdala1351.8
Appendix4.85
AtrioventricularNode4.3
BDCA4+_DentriticCells4.85
Bonemarrow7.05
BronchialEpithelialCells4.55
CD105+_Endothelial97.9
CD14+_Monocytes5.1
CD19+_BCells(neg._sel.)5.05
CD33+_Myeloid5.85
CD34+5.75
CD4+_Tcells4.85
CD56+_NKCells5.3
CD71+_EarlyErythroid4.6
CD8+_Tcells4.35
CardiacMyocytes6.45
Caudatenucleus1531.65
Cerebellum315.65
CerebellumPeduncles1127.8
CiliaryGanglion4.95
CingulateCortex1205.85
Colorectaladenocarcinoma4.7
DorsalRootGanglion4.25
FetalThyroid5.3
Fetalbrain4.65
Fetalliver6988.45
Fetallung1180.4
GlobusPallidus385.4
Heart6.7
Hypothalamus4591.8
Kidney3.8
Leukemia_chronicMyelogenousK-5624.25
Leukemia_promyelocytic-HL-604.15
Leukemialymphoblastic(MOLT-4)3.75
Liver17373.05
Lung5.2
Lymphnode4.05
Lymphoma_burkitts(Daudi)6.05
Lymphoma_burkitts(Raji)6.65
MedullaOblongata2378
OccipitalLobe2190.9
OlfactoryBulb304.55
Ovary3.45
Pancreas3.75
PancreaticIslet5.25
ParietalLobe3295.5
Pituitary5.75
Placenta4.85
Pons922.7
PrefrontalCortex1793.55
Prostate5.75
Salivarygland47.5
SkeletalMuscle5.9
Skin4.05
SmoothMuscle5.35
Spinalcord7905.9
SubthalamicNucleus491.25
SuperiorCervicalGanglion5.8
TemporalLobe164.2
Testis40.7
TestisGermCell67.2
TestisIntersitial31.25
TestisLeydigCell5.05
TestisSeminiferousTubule5.05
Thalamus3634.5
Thymus3.9
Thyroid5.95
Tongue6.75
Tonsil4.8
Trachea74.05
TrigeminalGanglion5.4
Uterus3.85
UterusCorpus4.55
WholeBlood5.2
Wholebrain1145.4
colon4.7
pineal_day19.18
pineal_night16.5
retina5151.4
small_intestine4.55
Allen Brain Atlas Top
Human Whole Brain Microarrayview in Allen Brain Atlas
  • Probe id     Donor id      
  • Probe name: A_32_P42137
  • Donor H0351.2001
  • Sex: Male     Age: 24 years     Race/Ethnicity: African American     Handedness: Left
  • Tissue Receipt Date: 7/29/2009     Serology: Pass      Tissue pH :6.72     Additional Medical Information :History of asthma
  • Postmortem Interval: 23 hours (estimated time of death to time that tissue is frozen)
  • Toxicology: Positive for atropine and caffeine, at levels usually not toxicologically significant
Tissue Expression(mean ± stddev) Expression Bar
Amygdala2.62 ± 1.11
Basal Forebrain2.25 ± 0.28
Basal Part of Pons2.67 ± 1.01
Cerebellar Cortex2.11 ± 0.71
Cerebellar Nuclei3.07 ± 1.01
Claustrum3.14 ± 1.04
Epithalamus2.11 ± 0.82
Frontal Lobe2.34 ± 1.01
Globus Pallidus3.87 ± 0.66
Hypothalamus2.23 ± 0.77
Insula1.92 ± 0.42
Limbic Lobe2.22 ± 0.77
Mesencephalon2.46 ± 0.88
Myelencephalon2.38 ± 0.84
Occipital Lobe2.11 ± 0.57
Parietal Lobe2.23 ± 0.76
Pontine Tegmentum2.42 ± 0.82
Striatum2.41 ± 0.66
Subthalamus2.4 ± 0.66
Temporal Lobe2.06 ± 0.7
Thalamus2.33 ± 0.66
White Matter5.54 ± 0.42
Mouse Brain ISH
Gene Symbol Brain Structure ID Brain Structure Name Express Desity/Level (Meatured by ISH) Express Bar
TrfCBCerebellum56.28
75.59
TrfCTXCerebral cortex67.78
53.26
TrfHIPHippocampal region49.06
79.75
TrfHPFHippocampal formation57.88
72.85
TrfHYHypothalamus37.04
29.79
TrfLSXLateral septal complex35.97
27.16
TrfMBMidbrain38.57
36.8
TrfMYMedulla60.9
70.97
TrfOLFOlfactory bulb71.8
64.17
TrfPPons43.1
47.25
TrfPALPallidum43.2
41.43
TrfRHPRetrohippocampal region73.87
65.31
TrfsAMYStriatum-like amygdalar nuclei50.4
37.48
TrfSTRStriatum31.73
23.82
TrfSTRdStriatum dorsal region25.42
19.39
TrfSTRvStriatum ventral region40.57
28.68
TrfTHThalamus42.6
42.43
Peptide Top
Peptide Name Peptide Lengh Peptide Start Peptide End Peptide Sequence Source
PAp00000269 15 237 251 ADRDQYELLCLDNTR Peptide Atlas
TRFE_HUMAN_108 14 108 121 EDPQTFYYAVAVVK PRIDE
TRFE_HUMAN_122 11 122 132 KDSGFQMNQLR PRIDE
TRFE_HUMAN_123 10 123 132 DSGFQMNQLR PRIDE
TRFE_HUMAN_144 19 144 162 SAGWNIPIGLLYCDLPEPR PRIDE
TRFE_HUMAN_216 10 216 225 DGAGDVAFVK PRIDE
TRFE_HUMAN_219 7 219 225 GDVAFVK PRIDE
TRFE_HUMAN_226 11 226 236 HSTIFENLANK PRIDE
TRFE_HUMAN_237 15 237 251 ADRDQYELLCLDNTR PRIDE
TRFE_HUMAN_252 22 252 273 KPVDEYKDCHLAQVPSHTVVAR PRIDE
TRFE_HUMAN_259 15 259 273 DCHLAQVPSHTVVAR PRIDE
TRFE_HUMAN_259 20 259 278 DCHLAQVPSHTVVARSMGGK PRIDE
TRFE_HUMAN_274 22 274 295 SMGGKEDLIWELLNQAQEHFGK PRIDE
TRFE_HUMAN_274 24 274 297 SMGGKEDLIWELLNQAQEHFGKDK PRIDE
TRFE_HUMAN_279 17 279 295 EDLIWELLNQAQEHFGK PRIDE
TRFE_HUMAN_298 13 298 310 SKEFQLFSSPHGK PRIDE
TRFE_HUMAN_300 11 300 310 EFQLFSSPHGK PRIDE
TRFE_HUMAN_311 5 311 315 DLLFK PRIDE
TRFE_HUMAN_316 8 316 323 DSAHGFLK PRIDE
TRFE_HUMAN_332 12 332 343 MYLGYEYVTAIR PRIDE
TRFE_HUMAN_363 9 363 371 WCALSHHER PRIDE
TRFE_HUMAN_374 11 374 384 CDEWSVNSVGK PRIDE
TRFE_HUMAN_385 15 385 399 IECVSAETTEDCIAK PRIDE
TRFE_HUMAN_400 21 400 420 IMNGEADAMSLDGGFVYIAGK PRIDE
TRFE_HUMAN_434 19 434 452 SDNCEDTPEAGYFAVAVVK PRIDE
TRFE_HUMAN_453 12 453 464 KSASDLTWDNLK PRIDE
TRFE_HUMAN_454 11 454 464 SASDLTWDNLK PRIDE
TRFE_HUMAN_47 14 47 60 SVIPSDGPSVACVK PRIDE
TRFE_HUMAN_476 14 476 489 TAGWNIPMGLLYNK PRIDE
TRFE_HUMAN_495 14 495 508 FDEFFSEGCAPGSK PRIDE
TRFE_HUMAN_516 15 516 530 LCMGSGLNLCEPNNK PRIDE
TRFE_HUMAN_531 11 531 541 EGYYGYTGAFR PRIDE
TRFE_HUMAN_547 18 547 564 GDVAFVKHQTVPQNTGGK PRIDE
TRFE_HUMAN_554 18 554 571 HQTVPQNTGGKNPDPWAK PRIDE
TRFE_HUMAN_565 7 565 571 NPDPWAK PRIDE
TRFE_HUMAN_572 16 572 587 NLNEKDYELLCLDGTR PRIDE
TRFE_HUMAN_588 13 588 600 KPVEEYANCHLAR PRIDE
TRFE_HUMAN_601 9 601 609 APNHAVVTR PRIDE
TRFE_HUMAN_62 8 62 69 ASYLDCIR PRIDE
TRFE_HUMAN_647 5 647 651 DLLFR PRIDE
TRFE_HUMAN_669 8 669 676 YLGEEYVK PRIDE
TRFE_HUMAN_70 38 70 107 AIAANEADAVTLDAGLVYDAYLAPNNLKPVVAEFYGSK PRIDE

Simple Query:


  (e.g. CHD8)

Syndromic Genes

Non-syndromic Genes

AutismKB Statistics

  • Studies: 1,036
  • Genes: 1,379
  • CNVs/SVs: 5,420
  • SNVs/Indels: 11,669
  • de novo Mutations: 5,669
  • Mosaics: 789
  • Linkage Regions: 172
  • Paper Collected: 6/30/2018
  • Last Update: 8/26/2018


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