AutismKB 2.0

Annotation Detail for TSPAN7


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Basic Information Top
Gene Symbol:TSPAN7 ( A15,CCG-B7,CD231,DXS1692E,MRX58,MXS1,TALLA-1,TM4SF2,TM4SF2b )
Gene Full Name: tetraspanin 7
Band: Xp11.4
Quick LinksEntrez ID:7102; OMIM: 300096; Uniprot ID:TSN7_HUMAN; ENSEMBL ID: ENSG00000156298; HGNC ID: 11854
Relate to Another Database: SFARIGene; denovo-db
Unigene EST Top
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
embryoid body0 / 707610 
blastocyst1 / 6231916
fetus101 / 564012179
neonate0 / 310970 
infant11 / 23620465
juvenile5 / 5555689
adult248 / 1939121127
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
adrenal tumor11 / 12794859
bladder carcinoma1 / 1747557
breast (mammary gland) tumor2 / 9417821
cervical tumor1 / 3436629
chondrosarcoma3 / 8282336
colorectal tumor1 / 1142468
esophageal tumor3 / 17290173
gastrointestinal tumor0 / 1193690 
germ cell tumor30 / 263845113
glioma19 / 106883177
head and neck tumor1 / 1363027
kidney tumor4 / 6895958
leukemia10 / 95842104
liver tumor2 / 9635920
lung tumor19 / 103127184
lymphoma1 / 7175513
non-neoplasia67 / 97250688
normal752 / 3360307223
ovarian tumor4 / 7668252
pancreatic tumor2 / 10461619
primitive neuroectodermal tumor of the CNS38 / 125680302
prostate cancer1 / 1026809
retinoblastoma0 / 463560 
skin tumor5 / 12494940
soft tissue/muscle tissue tumor2 / 12519115
uterine tumor3 / 9025733
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
adipose tissue1 / 1310676
adrenal gland23 / 33197692
ascites0 / 400150 
bladder2 / 2975767
blood8 / 12347864
bone3 / 7165541
bone marrow1 / 4880120
brain957 / 1100989869
cervix3 / 4817162
connective tissue10 / 14925566
ear11 / 16212678
embryonic tissue1 / 2157224
esophagus3 / 20209148
eye33 / 211054156
heart14 / 89626156
intestine19 / 23447281
kidney11 / 21177751
larynx2 / 2414582
liver6 / 20774328
lung36 / 336974106
lymph0 / 442700 
lymph node0 / 916100 
mammary gland3 / 15327119
mouth0 / 670520 
muscle9 / 10771583
nerve1 / 1576863
ovary4 / 10205139
pancreas32 / 214812148
parathyroid0 / 205390 
pharynx10 / 41328241
pituitary gland6 / 16585361
placenta26 / 28082592
prostate3 / 18934515
salivary gland0 / 201550 
skin5 / 21057423
spleen8 / 53952148
stomach5 / 9661951
testis3 / 3304429
thymus0 / 811310 
thyroid0 / 474730 
tonsil0 / 169990 
trachea1 / 5241319
umbilical cord0 / 136800 
uterus10 / 23287842
vascular0 / 517800 
Microarray in BioGPS Top
Select probe  
  • Microarray Platform: GeneAtlas U133A, gcrma
  • Affymatrix Probe ID: 202242_at
Cell line Expression level Expression bar
721_B_lymphoblasts7.15
Adipocyte5.9
AdrenalCortex79.2
Adrenalgland116.15
Amygdala1380.45
Appendix26.65
AtrioventricularNode6.7
BDCA4+_DentriticCells6.25
Bonemarrow6.05
BronchialEpithelialCells6
CD105+_Endothelial9.25
CD14+_Monocytes6.45
CD19+_BCells(neg._sel.)6.35
CD33+_Myeloid7.75
CD34+7.75
CD4+_Tcells5.8
CD56+_NKCells6.25
CD71+_EarlyErythroid8
CD8+_Tcells5
CardiacMyocytes7.45
Caudatenucleus1275.35
Cerebellum1724.25
CerebellumPeduncles1204.2
CiliaryGanglion21.95
CingulateCortex1258.25
Colorectaladenocarcinoma5.35
DorsalRootGanglion21.25
FetalThyroid9.35
Fetalbrain675.9
Fetalliver18.05
Fetallung35.05
GlobusPallidus759.3
Heart37.5
Hypothalamus827.9
Kidney48.8
Leukemia_chronicMyelogenousK-5625.05
Leukemia_promyelocytic-HL-605.45
Leukemialymphoblastic(MOLT-4)438
Liver9.15
Lung225.5
Lymphnode87.2
Lymphoma_burkitts(Daudi)7.6
Lymphoma_burkitts(Raji)8.6
MedullaOblongata1354.35
OccipitalLobe1575.35
OlfactoryBulb9.15
Ovary6.35
Pancreas5.75
PancreaticIslet119
ParietalLobe934.05
Pituitary319.95
Placenta13.95
Pons794.9
PrefrontalCortex2475.7
Prostate8.05
Salivarygland5.55
SkeletalMuscle17.45
Skin5.55
SmoothMuscle6.85
Spinalcord239.45
SubthalamicNucleus1200.5
SuperiorCervicalGanglion18.55
TemporalLobe887.25
Testis5.25
TestisGermCell6.8
TestisIntersitial10.25
TestisLeydigCell6
TestisSeminiferousTubule5.1
Thalamus593.25
Thymus12.5
Thyroid53.8
Tongue10.3
Tonsil5.9
Trachea15.45
TrigeminalGanglion7.15
Uterus21.2
UterusCorpus6.65
WholeBlood6.65
Wholebrain1847.7
colon121.25
pineal_day1273.52
pineal_night1170.18
retina290.425
small_intestine68.4
Allen Brain Atlas Top
Human Whole Brain Microarrayview in Allen Brain Atlas
  • Probe id     Donor id      
  • Probe name: CUST_8799_PI416261804
  • Donor H0351.2001
  • Sex: Male     Age: 24 years     Race/Ethnicity: African American     Handedness: Left
  • Tissue Receipt Date: 7/29/2009     Serology: Pass      Tissue pH :6.72     Additional Medical Information :History of asthma
  • Postmortem Interval: 23 hours (estimated time of death to time that tissue is frozen)
  • Toxicology: Positive for atropine and caffeine, at levels usually not toxicologically significant
Tissue Expression(mean ± stddev) Expression Bar
Amygdala8.17 ± 0.41
Basal Forebrain7.82 ± 0.5
Basal Part of Pons8.37 ± 0.25
Cerebellar Cortex8.1 ± 0.42
Cerebellar Nuclei7.64 ± 0.42
Claustrum8.09 ± 0.36
Epithalamus7.13 ± 0.76
Frontal Lobe8.11 ± 0.5
Globus Pallidus6.81 ± 0.36
Hypothalamus8.18 ± 0.59
Insula8.11 ± 0.36
Limbic Lobe8.13 ± 0.54
Mesencephalon7.79 ± 0.37
Myelencephalon7.92 ± 0.53
Occipital Lobe7.89 ± 0.36
Parietal Lobe8.07 ± 0.45
Pontine Tegmentum7.93 ± 0.39
Striatum8.08 ± 0.33
Subthalamus8.03 ± 0.35
Temporal Lobe8.15 ± 0.44
Thalamus7.88 ± 0.31
White Matter6.23 ± 0.15
Mouse Brain ISH
Gene Symbol Brain Structure ID Brain Structure Name Express Desity/Level (Meatured by ISH) Express Bar
Tspan7CBCerebellum0
0
Tspan7CTXCerebral cortex0
0
Tspan7HIPHippocampal region0
0
Tspan7HPFHippocampal formation0
0
Tspan7HYHypothalamus0
0
Tspan7LSXLateral septal complex0
0
Tspan7MBMidbrain0
0
Tspan7MYMedulla0
0
Tspan7OLFOlfactory bulb0
0
Tspan7PPons0
0
Tspan7PALPallidum0
0
Tspan7RHPRetrohippocampal region0
0
Tspan7sAMYStriatum-like amygdalar nuclei0
0
Tspan7STRStriatum0
0
Tspan7STRdStriatum dorsal region0
0
Tspan7STRvStriatum ventral region0
0
Tspan7THThalamus0
0
Peptide Top
Peptide Name Peptide Lengh Peptide Start Peptide End Peptide Sequence Source
PAp00429390 15 123 137 TYTDAMQTYNGNDER Peptide Atlas

Simple Query:


  (e.g. CHD8)

Syndromic Genes

Non-syndromic Genes

AutismKB Statistics

  • Studies: 1,036
  • Genes: 1,379
  • CNVs/SVs: 5,420
  • SNVs/Indels: 11,669
  • de novo Mutations: 5,669
  • Mosaics: 789
  • Linkage Regions: 172
  • Paper Collected: 6/30/2018
  • Last Update: 8/26/2018


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