AutismKB 2.0

Annotation Detail for TRAPPC10


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Basic Information Top
Gene Symbol:TRAPPC10 ( EHOC-1,EHOC1,FLJ54223,FLJ54817,FLJ55683,GT334,MGC126777,TMEM1,TRS130,TRS30 )
Gene Full Name: trafficking protein particle complex 10
Band: 21q22.3
Quick LinksEntrez ID:7109; OMIM: 602103; Uniprot ID:TPC10_HUMAN; ENSEMBL ID: ENSG00000160218; HGNC ID: 11868
Relate to Another Database: SFARIGene; denovo-db
Unigene EST Top
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
embryoid body4 / 7076156
blastocyst4 / 6231964
fetus12 / 56401221
neonate0 / 310970 
infant0 / 236200 
juvenile0 / 555560 
adult84 / 193912143
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
adrenal tumor0 / 127940 
bladder carcinoma2 / 17475114
breast (mammary gland) tumor2 / 9417821
cervical tumor1 / 3436629
chondrosarcoma4 / 8282348
colorectal tumor5 / 11424643
esophageal tumor0 / 172900 
gastrointestinal tumor4 / 11936933
germ cell tumor10 / 26384537
glioma1 / 1068839
head and neck tumor9 / 13630266
kidney tumor0 / 689590 
leukemia7 / 9584273
liver tumor3 / 9635931
lung tumor1 / 1031279
lymphoma8 / 71755111
non-neoplasia0 / 972500 
normal124 / 336030736
ovarian tumor2 / 7668226
pancreatic tumor3 / 10461628
primitive neuroectodermal tumor of the CNS0 / 1256800 
prostate cancer15 / 102680146
retinoblastoma1 / 4635621
skin tumor1 / 1249498
soft tissue/muscle tissue tumor2 / 12519115
uterine tumor4 / 9025744
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
adipose tissue0 / 131060 
adrenal gland0 / 331970 
ascites0 / 400150 
bladder3 / 29757100
blood13 / 123478105
bone5 / 7165569
bone marrow0 / 488010 
brain31 / 110098928
cervix1 / 4817120
connective tissue2 / 14925513
ear0 / 162120 
embryonic tissue9 / 21572241
esophagus0 / 202090 
eye12 / 21105456
heart1 / 8962611
intestine13 / 23447255
kidney6 / 21177728
larynx1 / 2414541
liver9 / 20774343
lung8 / 33697423
lymph6 / 44270135
lymph node12 / 91610130
mammary gland4 / 15327126
mouth3 / 6705244
muscle3 / 10771527
nerve2 / 15768126
ovary2 / 10205119
pancreas7 / 21481232
parathyroid0 / 205390 
pharynx1 / 4132824
pituitary gland1 / 1658560
placenta6 / 28082521
prostate19 / 189345100
salivary gland1 / 2015549
skin1 / 2105744
spleen3 / 5395255
stomach4 / 9661941
testis19 / 33044257
thymus8 / 8113198
thyroid5 / 47473105
tonsil0 / 169990 
trachea2 / 5241338
umbilical cord0 / 136800 
uterus6 / 23287825
vascular2 / 5178038
Microarray in BioGPS Top
Select probe  
  • Microarray Platform: GeneAtlas U133A, gcrma
  • Affymatrix Probe ID: 208184_s_at
Cell line Expression level Expression bar
721_B_lymphoblasts31.2
Adipocyte11.55
AdrenalCortex11.9
Adrenalgland9.5
Amygdala14.25
Appendix11.5
AtrioventricularNode8.7
BDCA4+_DentriticCells34.4
Bonemarrow11.45
BronchialEpithelialCells11.15
CD105+_Endothelial10.8
CD14+_Monocytes31.35
CD19+_BCells(neg._sel.)54.6
CD33+_Myeloid23.4
CD34+23.8
CD4+_Tcells51.75
CD56+_NKCells99.7
CD71+_EarlyErythroid11.95
CD8+_Tcells109.9
CardiacMyocytes15.5
Caudatenucleus10.5
Cerebellum9.35
CerebellumPeduncles12.8
CiliaryGanglion7.35
CingulateCortex11.95
Colorectaladenocarcinoma13.55
DorsalRootGanglion7.15
FetalThyroid11.15
Fetalbrain11.55
Fetalliver9.75
Fetallung9.45
GlobusPallidus8.35
Heart13.3
Hypothalamus12.2
Kidney9.5
Leukemia_chronicMyelogenousK-56210.5
Leukemia_promyelocytic-HL-6010.35
Leukemialymphoblastic(MOLT-4)9.3
Liver15.05
Lung13.1
Lymphnode11.4
Lymphoma_burkitts(Daudi)14.9
Lymphoma_burkitts(Raji)16.2
MedullaOblongata10.85
OccipitalLobe10.1
OlfactoryBulb9.6
Ovary7.35
Pancreas9.1
PancreaticIslet16.7
ParietalLobe12.25
Pituitary13.75
Placenta13.3
Pons11.1
PrefrontalCortex14.45
Prostate13.15
Salivarygland9.35
SkeletalMuscle18.8
Skin7.7
SmoothMuscle13.4
Spinalcord14.6
SubthalamicNucleus10.25
SuperiorCervicalGanglion13.95
TemporalLobe11.55
Testis11.85
TestisGermCell10.55
TestisIntersitial9.9
TestisLeydigCell12.8
TestisSeminiferousTubule11.25
Thalamus11.8
Thymus9.45
Thyroid14.4
Tongue11.3
Tonsil11.7
Trachea9.75
TrigeminalGanglion11.75
Uterus7.9
UterusCorpus10.3
WholeBlood13.05
Wholebrain10.2
colon13.6
pineal_day14.3
pineal_night13.9
retina14.3
small_intestine11.4
Allen Brain Atlas Top
Human Whole Brain Microarrayview in Allen Brain Atlas
  • Probe id     Donor id      
  • Probe name: CUST_7470_PI416261804
  • Donor H0351.2001
  • Sex: Male     Age: 24 years     Race/Ethnicity: African American     Handedness: Left
  • Tissue Receipt Date: 7/29/2009     Serology: Pass      Tissue pH :6.72     Additional Medical Information :History of asthma
  • Postmortem Interval: 23 hours (estimated time of death to time that tissue is frozen)
  • Toxicology: Positive for atropine and caffeine, at levels usually not toxicologically significant
Tissue Expression(mean ± stddev) Expression Bar
Amygdala1.75 ± 0.98
Basal Forebrain1.33 ± 0.38
Basal Part of Pons1.2 ± 0.37
Cerebellar Cortex1.23 ± 0.7
Cerebellar Nuclei1.7 ± 0.7
Claustrum2.35 ± 0.91
Epithalamus0.94 ± 0.77
Frontal Lobe1.28 ± 0.67
Globus Pallidus1.95 ± 0.42
Hypothalamus1.35 ± 0.68
Insula1.32 ± 0.35
Limbic Lobe1.54 ± 0.71
Mesencephalon1.67 ± 0.74
Myelencephalon1.52 ± 0.74
Occipital Lobe1.79 ± 0.97
Parietal Lobe1.51 ± 0.79
Pontine Tegmentum1.43 ± 0.72
Striatum1.76 ± 0.65
Subthalamus1.43 ± 0.71
Temporal Lobe1.37 ± 0.7
Thalamus1.4 ± 0.67
White Matter2.75 ± 0.79
Mouse Brain ISH
Gene Symbol Brain Structure ID Brain Structure Name Express Desity/Level (Meatured by ISH) Express Bar
Tmem1CBCerebellum43.21
36.7
Tmem1CTXCerebral cortex44.88
33.92
Tmem1HIPHippocampal region63.67
61.65
Tmem1HPFHippocampal formation59.68
54.73
Tmem1HYHypothalamus11.26
7.99
Tmem1LSXLateral septal complex34.06
21.63
Tmem1MBMidbrain13.77
12.55
Tmem1MYMedulla24.78
23.88
Tmem1OLFOlfactory bulb88.71
67.99
Tmem1PPons18.3
17.5
Tmem1PALPallidum18.63
15.57
Tmem1RHPRetrohippocampal region53.3
45.06
Tmem1sAMYStriatum-like amygdalar nuclei20.6
13.55
Tmem1STRStriatum24.72
16.04
Tmem1STRdStriatum dorsal region17.39
11.39
Tmem1STRvStriatum ventral region47.2
28.71
Tmem1THThalamus13.16
9.83
Peptide Top
Peptide Name Peptide Lengh Peptide Start Peptide End Peptide Sequence Source
PAp00518917 20 558 577 HFCQEILDFASQPSDSPGHK Peptide Atlas
TPC10_HUMAN_578 12 578 589 IVLPMHSFAQLR PRIDE

Simple Query:


  (e.g. CHD8)

Syndromic Genes

Non-syndromic Genes

AutismKB Statistics

  • Studies: 1,036
  • Genes: 1,379
  • CNVs/SVs: 5,420
  • SNVs/Indels: 11,669
  • de novo Mutations: 5,669
  • Mosaics: 789
  • Linkage Regions: 172
  • Paper Collected: 6/30/2018
  • Last Update: 8/26/2018


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