Annotation Detail for C1QC
Basic Information Top
| Gene Symbol: | C1QC ( C1Q-C,C1QG,FLJ27103 ) |
|---|---|
| Gene Full Name: | complement component 1, q subcomponent, C chain |
| Band: | 1p36.12 |
| Quick Links | Entrez ID:714; OMIM: 120575; Uniprot ID:C1QC_HUMAN; ENSEMBL ID: ENSG00000159189; HGNC ID: 1245 |
| Relate to Another Database: | SFARIGene; denovo-db |
- Unigene ID: Hs.467753
| Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
|---|---|---|---|
 | |||
| embryoid body | 0 / 70761 | 0 | |
| blastocyst | 0 / 62319 | 0 | |
| fetus | 23 / 564012 | 40 |  |
| neonate | 0 / 31097 | 0 | |
| infant | 0 / 23620 | 0 | |
| juvenile | 1 / 55556 | 17 | |
| adult | 170 / 1939121 | 87 |  |
| Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
|---|---|---|---|
| |||
| adrenal tumor | 0 / 12794 | 0 | |
| bladder carcinoma | 2 / 17475 | 114 | |
| breast (mammary gland) tumor | 0 / 94178 | 0 | |
| cervical tumor | 0 / 34366 | 0 | |
| chondrosarcoma | 3 / 82823 | 36 | |
| colorectal tumor | 6 / 114246 | 52 | |
| esophageal tumor | 0 / 17290 | 0 | |
| gastrointestinal tumor | 1 / 119369 | 8 |  |
| germ cell tumor | 1 / 263845 | 3 | |
| glioma | 9 / 106883 | 84 | |
| head and neck tumor | 2 / 136302 | 14 | |
| kidney tumor | 5 / 68959 | 72 | |
| leukemia | 0 / 95842 | 0 | |
| liver tumor | 1 / 96359 | 10 | |
| lung tumor | 5 / 103127 | 48 | |
| lymphoma | 0 / 71755 | 0 | |
| non-neoplasia | 2 / 97250 | 20 | |
| normal | 151 / 3360307 | 44 | |
| ovarian tumor | 2 / 76682 | 26 | |
| pancreatic tumor | 4 / 104616 | 38 | |
| primitive neuroectodermal tumor of the CNS | 1 / 125680 | 7 | |
| prostate cancer | 2 / 102680 | 19 | |
| retinoblastoma | 0 / 46356 | 0 | |
| skin tumor | 0 / 124949 | 0 | |
| soft tissue/muscle tissue tumor | 2 / 125191 | 15 | |
| uterine tumor | 2 / 90257 | 22 | |
| Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
|---|---|---|---|
| |||
| adipose tissue | 1 / 13106 | 76 | |
| adrenal gland | 0 / 33197 | 0 | |
| ascites | 0 / 40015 | 0 | |
| bladder | 1 / 29757 | 33 | |
| blood | 0 / 123478 | 0 | |
| bone | 0 / 71655 | 0 | |
| bone marrow | 1 / 48801 | 20 | |
| brain | 17 / 1100989 | 15 | |
| cervix | 0 / 48171 | 0 | |
| connective tissue | 6 / 149255 | 40 | |
| ear | 0 / 16212 | 0 | |
| embryonic tissue | 0 / 215722 | 0 | |
| esophagus | 0 / 20209 | 0 | |
| eye | 5 / 211054 | 23 | |
| heart | 3 / 89626 | 33 | |
| intestine | 22 / 234472 | 93 | |
| kidney | 6 / 211777 | 28 | |
| larynx | 0 / 24145 | 0 | |
| liver | 5 / 207743 | 24 | |
| lung | 45 / 336974 | 133 | |
| lymph | 0 / 44270 | 0 | |
| lymph node | 0 / 91610 | 0 | |
| mammary gland | 7 / 153271 | 45 | |
| mouth | 1 / 67052 | 14 | |
| muscle | 0 / 107715 | 0 | |
| nerve | 0 / 15768 | 0 | |
| ovary | 6 / 102051 | 58 | |
| pancreas | 7 / 214812 | 32 | |
| parathyroid | 0 / 20539 | 0 | |
| pharynx | 0 / 41328 | 0 | |
| pituitary gland | 1 / 16585 | 60 | |
| placenta | 35 / 280825 | 124 | |
| prostate | 2 / 189345 | 10 | |
| salivary gland | 0 / 20155 | 0 | |
| skin | 0 / 210574 | 0 | |
| spleen | 10 / 53952 | 185 | |
| stomach | 1 / 96619 | 10 | |
| testis | 2 / 330442 | 6 | |
| thymus | 1 / 81131 | 12 | |
| thyroid | 1 / 47473 | 21 | |
| tonsil | 0 / 16999 | 0 | |
| trachea | 0 / 52413 | 0 | |
| umbilical cord | 0 / 13680 | 0 | |
| uterus | 4 / 232878 | 17 | |
| vascular | 2 / 51780 | 38 | |
Microarray in - Probe name: A_23_P125977
- Donor H0351.2001
- Sex: Male Age: 24 years Race/Ethnicity: African American Handedness: Left
- Tissue Receipt Date: 7/29/2009 Serology: Pass Tissue pH :6.72 Additional Medical Information :History of asthma
- Postmortem Interval: 23 hours (estimated time of death to time that tissue is frozen)
- Toxicology: Positive for atropine and caffeine, at levels usually not toxicologically significant
| Tissue | Expression(mean ± stddev) | Expression Bar |
|---|---|---|
| Amygdala | 5.79 ± 0.66 | ![](../"images/bar_3.png"){kind=small}   |
| Basal Forebrain | 5.51 ± 0.61 | |
| Basal Part of Pons | 6.15 ± 0.43 | |
| Cerebellar Cortex | 4.73 ± 0.47 | |
| Cerebellar Nuclei | 6.99 ± 0.41 | |
| Claustrum | 4.88 ± 0.85 | |
| Epithalamus | 6.65 ± 0.47 | |
| Frontal Lobe | 5.3 ± 0.79 | |
| Globus Pallidus | 7.39 ± 0.43 | |
| Hypothalamus | 5.54 ± 1.16 | |
| Insula | 5.59 ± 0.63 | |
| Limbic Lobe | 5.08 ± 0.74 | |
| Mesencephalon | 5.38 ± 1.03 | |
| Myelencephalon | 5.5 ± 0.77 | |
| Occipital Lobe | 4.81 ± 0.76 | |
| Parietal Lobe | 5.46 ± 0.77 | |
| Pontine Tegmentum | 5.19 ± 0.74 | |
| Striatum | 5.95 ± 0.56 | |
| Subthalamus | 6.25 ± 0.46 | |
| Temporal Lobe | 5.56 ± 0.78 | |
| Thalamus | 5.49 ± 0.63 | |
| White Matter | 6.91 ± 0.7 | |
Mouse Brain ISH 
| Gene Symbol | Brain Structure ID | Brain Structure Name | Express Desity/Level (Meatured by ISH) | Express Bar |
|---|---|---|---|---|
| C1qc | CB | Cerebellum | 12.93 | |
| 16.66 | | |||
| C1qc | CTX | Cerebral cortex | 37.38 | |
| 30.75 | | |||
| C1qc | HIP | Hippocampal region | 27.99 | |
| 30.24 | | |||
| C1qc | HPF | Hippocampal formation | 29.08 | |
| 29.27 | | |||
| C1qc | HY | Hypothalamus | 16.81 | |
| 14.39 | | |||
| C1qc | LSX | Lateral septal complex | 29.22 | |
| 24.33 | | |||
| C1qc | MB | Midbrain | 16.3 | |
| 15.54 | | |||
| C1qc | MY | Medulla | 11.92 | |
| 11.4 | | |||
| C1qc | OLF | Olfactory bulb | 49.04 | |
| 42.21 | | |||
| C1qc | P | Pons | 13.17 | |
| 12.54 | | |||
| C1qc | PAL | Pallidum | 36.49 | |
| 32.56 | | |||
| C1qc | RHP | Retrohippocampal region | 30.97 | |
| 27.88 | | |||
| C1qc | sAMY | Striatum-like amygdalar nuclei | 29.57 | |
| 26.58 | | |||
| C1qc | STR | Striatum | 33.16 | |
| 27.63 | | |||
| C1qc | STRd | Striatum dorsal region | 31.6 | |
| 26.48 | | |||
| C1qc | STRv | Striatum ventral region | 41.77 | |
| 32.65 | | |||
| C1qc | TH | Thalamus | 17.98 | |
| 15.58 | |
| Peptide Name | Peptide Lengh | Peptide Start | Peptide End | Peptide Sequence | Source |
|---|---|---|---|---|---|
| PAp00025202 | 18 | 140 | 157 | FNAVLTNPQGDYDTSTGK | Peptide Atlas |