Annotation Detail for TSSC1
Basic Information Top
| Gene Symbol: | TSSC1 ( - ) |
|---|---|
| Gene Full Name: | tumor suppressing subtransferable candidate 1 |
| Band: | 2p25.3 |
| Quick Links | Entrez ID:7260; OMIM: 608998; Uniprot ID:TSSC1_HUMAN; ENSEMBL ID: ENSG00000032389; HGNC ID: |
| Relate to Another Database: | SFARIGene; denovo-db |
- Unigene ID: Hs.502770
| Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
|---|---|---|---|
 | |||
| embryoid body | 2 / 70761 | 28 |  |
| blastocyst | 2 / 62319 | 32 | |
| fetus | 41 / 564012 | 72 |  |
| neonate | 1 / 31097 | 32 | |
| infant | 3 / 23620 | 127 | |
| juvenile | 6 / 55556 | 107 | |
| adult | 133 / 1939121 | 68 | |
| Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
|---|---|---|---|
| |||
| adrenal tumor | 0 / 12794 | 0 | |
| bladder carcinoma | 2 / 17475 | 114 | |
| breast (mammary gland) tumor | 13 / 94178 | 138 | |
| cervical tumor | 5 / 34366 | 145 | |
| chondrosarcoma | 4 / 82823 | 48 | |
| colorectal tumor | 5 / 114246 | 43 | |
| esophageal tumor | 1 / 17290 | 57 | |
| gastrointestinal tumor | 7 / 119369 | 58 | |
| germ cell tumor | 21 / 263845 | 79 | |
| glioma | 11 / 106883 | 102 | |
| head and neck tumor | 4 / 136302 | 29 | |
| kidney tumor | 0 / 68959 | 0 | |
| leukemia | 9 / 95842 | 93 | |
| liver tumor | 6 / 96359 | 62 | |
| lung tumor | 4 / 103127 | 38 | |
| lymphoma | 11 / 71755 | 153 | |
| non-neoplasia | 6 / 97250 | 61 | |
| normal | 198 / 3360307 | 58 | |
| ovarian tumor | 4 / 76682 | 52 | |
| pancreatic tumor | 1 / 104616 | 9 |  |
| primitive neuroectodermal tumor of the CNS | 18 / 125680 | 143 | |
| prostate cancer | 5 / 102680 | 48 | |
| retinoblastoma | 8 / 46356 | 172 | |
| skin tumor | 8 / 124949 | 64 | |
| soft tissue/muscle tissue tumor | 4 / 125191 | 31 | |
| uterine tumor | 4 / 90257 | 44 | |
| Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
|---|---|---|---|
| |||
| adipose tissue | 0 / 13106 | 0 | |
| adrenal gland | 1 / 33197 | 30 | |
| ascites | 1 / 40015 | 24 | |
| bladder | 0 / 29757 | 0 | |
| blood | 8 / 123478 | 64 | |
| bone | 4 / 71655 | 55 | |
| bone marrow | 4 / 48801 | 81 | |
| brain | 98 / 1100989 | 89 | |
| cervix | 15 / 48171 | 311 |  |
| connective tissue | 5 / 149255 | 33 | |
| ear | 0 / 16212 | 0 | |
| embryonic tissue | 12 / 215722 | 55 | |
| esophagus | 1 / 20209 | 49 | |
| eye | 10 / 211054 | 47 | |
| heart | 3 / 89626 | 33 | |
| intestine | 16 / 234472 | 68 | |
| kidney | 11 / 211777 | 51 | |
| larynx | 1 / 24145 | 41 | |
| liver | 8 / 207743 | 38 | |
| lung | 17 / 336974 | 50 | |
| lymph | 1 / 44270 | 22 | |
| lymph node | 4 / 91610 | 43 | |
| mammary gland | 15 / 153271 | 97 | |
| mouth | 1 / 67052 | 14 | |
| muscle | 6 / 107715 | 55 | |
| nerve | 0 / 15768 | 0 | |
| ovary | 4 / 102051 | 39 | |
| pancreas | 4 / 214812 | 18 | |
| parathyroid | 3 / 20539 | 146 | |
| pharynx | 1 / 41328 | 24 | |
| pituitary gland | 1 / 16585 | 60 | |
| placenta | 14 / 280825 | 49 | |
| prostate | 7 / 189345 | 36 | |
| salivary gland | 0 / 20155 | 0 | |
| skin | 22 / 210574 | 104 | |
| spleen | 0 / 53952 | 0 | |
| stomach | 7 / 96619 | 72 | |
| testis | 25 / 330442 | 75 | |
| thymus | 3 / 81131 | 36 | |
| thyroid | 1 / 47473 | 21 | |
| tonsil | 1 / 16999 | 58 | |
| trachea | 2 / 52413 | 38 | |
| umbilical cord | 1 / 13680 | 73 | |
| uterus | 13 / 232878 | 55 | |
| vascular | 4 / 51780 | 77 | |
- Microarray Platform: GeneAtlas U133A, gcrma
- Affymatrix Probe ID: 217968_at
| Cell line | Expression level | Expression bar |
|---|---|---|
| ||
| 721_B_lymphoblasts | 75.55 | |
| Adipocyte | 6.5 | |
| AdrenalCortex | 7.1 | |
| Adrenalgland | 5.9 | |
| Amygdala | 8.95 | |
| Appendix | 7 | |
| AtrioventricularNode | 5.15 | |
| BDCA4+_DentriticCells | 47.9 | |
| Bonemarrow | 6.75 | |
| BronchialEpithelialCells | 8.95 | |
| CD105+_Endothelial | 13 | |
| CD14+_Monocytes | 7.75 | |
| CD19+_BCells(neg._sel.) | 14.1 | |
| CD33+_Myeloid | 11.45 | |
| CD34+ | 34.65 | |
| CD4+_Tcells | 15.15 | |
| CD56+_NKCells | 17.4 | |
| CD71+_EarlyErythroid | 6.5 | |
| CD8+_Tcells | 19.4 | |
| CardiacMyocytes | 8.6 | |
| Caudatenucleus | 9.25 | |
| Cerebellum | 10.35 | |
| CerebellumPeduncles | 11.8 | |
| CiliaryGanglion | 4.75 | |
| CingulateCortex | 8.45 | |
| Colorectaladenocarcinoma | 9.25 | |
| DorsalRootGanglion | 5.2 | |
| FetalThyroid | 6.9 | |
| Fetalbrain | 7.35 | |
| Fetalliver | 5.75 | |
| Fetallung | 4.7 | |
| GlobusPallidus | 5 | |
| Heart | 8.05 | |
| Hypothalamus | 9.05 | |
| Kidney | 5.75 | |
| Leukemia_chronicMyelogenousK-562 | 7.25 | |
| Leukemia_promyelocytic-HL-60 | 10.2 | |
| Leukemialymphoblastic(MOLT-4) | 6.85 | |
| Liver | 9.1 | |
| Lung | 7.2 | |
| Lymphnode | 5.5 | |
| Lymphoma_burkitts(Daudi) | 14.85 | |
| Lymphoma_burkitts(Raji) | 9.55 | |
| MedullaOblongata | 7 | |
| OccipitalLobe | 6.4 | |
| OlfactoryBulb | 5.15 | |
| Ovary | 4.4 | |
| Pancreas | 4.15 | |
| PancreaticIslet | 7.15 | |
| ParietalLobe | 7.3 | |
| Pituitary | 12.1 | |
| Placenta | 5.75 | |
| Pons | 8.9 | |
| PrefrontalCortex | 8.05 | |
| Prostate | 7.4 | |
| Salivarygland | 4.8 | |
| SkeletalMuscle | 7.7 | |
| Skin | 5.25 | |
| SmoothMuscle | 7.7 | |
| Spinalcord | 7.35 | |
| SubthalamicNucleus | 6.3 | |
| SuperiorCervicalGanglion | 8.3 | |
| TemporalLobe | 7.45 | |
| Testis | 8.45 | |
| TestisGermCell | 5.3 | |
| TestisIntersitial | 5.85 | |
| TestisLeydigCell | 6.8 | |
| TestisSeminiferousTubule | 5.9 | |
| Thalamus | 8.3 | |
| Thymus | 6.3 | |
| Thyroid | 11.3 | |
| Tongue | 6.75 | |
| Tonsil | 6.4 | |
| Trachea | 5.65 | |
| TrigeminalGanglion | 7.05 | |
| Uterus | 4.65 | |
| UterusCorpus | 6.1 | |
| WholeBlood | 6.15 | |
| Wholebrain | 37.6 | |
| colon | 6.85 | |
| pineal_day | 15.2 | |
| pineal_night | 17.22 | |
| retina | 8.3 | |
| small_intestine | 6.55 | |
- Probe name: CUST_8782_PI416261804
- Donor H0351.2001
- Sex: Male Age: 24 years Race/Ethnicity: African American Handedness: Left
- Tissue Receipt Date: 7/29/2009 Serology: Pass Tissue pH :6.72 Additional Medical Information :History of asthma
- Postmortem Interval: 23 hours (estimated time of death to time that tissue is frozen)
- Toxicology: Positive for atropine and caffeine, at levels usually not toxicologically significant
| Tissue | Expression(mean ± stddev) | Expression Bar |
|---|---|---|
| Amygdala | 4.77 ± 0.59 | ![](../"images/bar_3.png"){kind=small}   |
| Basal Forebrain | 4.52 ± 0.47 | |
| Basal Part of Pons | 5.05 ± 0.59 | |
| Cerebellar Cortex | 5.17 ± 0.42 | |
| Cerebellar Nuclei | 4.7 ± 0.83 | |
| Claustrum | 4.1 ± 0.74 | |
| Epithalamus | 4.99 ± 0.32 | |
| Frontal Lobe | 4.93 ± 0.6 | |
| Globus Pallidus | 3.81 ± 0.34 | |
| Hypothalamus | 4.65 ± 0.79 | |
| Insula | 5.04 ± 0.46 | |
| Limbic Lobe | 4.73 ± 0.6 | |
| Mesencephalon | 4.63 ± 0.58 | |
| Myelencephalon | 4.64 ± 0.63 | |
| Occipital Lobe | 4.3 ± 0.56 | |
| Parietal Lobe | 4.58 ± 0.57 | |
| Pontine Tegmentum | 4.66 ± 0.69 | |
| Striatum | 4.22 ± 0.58 | |
| Subthalamus | 4.23 ± 0.62 | |
| Temporal Lobe | 4.99 ± 0.56 | |
| Thalamus | 4.59 ± 0.73 | |
| White Matter | 3.86 ± 0.47 | |
Mouse Brain ISH 
| Gene Symbol | Brain Structure ID | Brain Structure Name | Express Desity/Level (Meatured by ISH) | Express Bar |
|---|---|---|---|---|
| Tssc1 | CB | Cerebellum | 19.04 | |
| 19.91 | | |||
| Tssc1 | CTX | Cerebral cortex | 90.99 | |
| 77.76 | | |||
| Tssc1 | HIP | Hippocampal region | 47.09 | |
| 58.18 | | |||
| Tssc1 | HPF | Hippocampal formation | 59.34 | |
| 62.71 | | |||
| Tssc1 | HY | Hypothalamus | 38.29 | |
| 29.03 | | |||
| Tssc1 | LSX | Lateral septal complex | 39.88 | |
| 28.37 | | |||
| Tssc1 | MB | Midbrain | 38.6 | |
| 33.97 | | |||
| Tssc1 | MY | Medulla | 49.79 | |
| 53.55 | | |||
| Tssc1 | OLF | Olfactory bulb | 79.53 | |
| 72.54 | | |||
| Tssc1 | P | Pons | 43.98 | |
| 47.53 | | |||
| Tssc1 | PAL | Pallidum | 30.37 | |
| 28.11 | | |||
| Tssc1 | RHP | Retrohippocampal region | 90.28 | |
| 76.33 | | |||
| Tssc1 | sAMY | Striatum-like amygdalar nuclei | 62.86 | |
| 49.97 | | |||
| Tssc1 | STR | Striatum | 35.03 | |
| 26.51 | | |||
| Tssc1 | STRd | Striatum dorsal region | 27.06 | |
| 20.44 | | |||
| Tssc1 | STRv | Striatum ventral region | 47.26 | |
| 34.13 | | |||
| Tssc1 | TH | Thalamus | 34.78 | |
| 28.28 | |
| Peptide Name | Peptide Lengh | Peptide Start | Peptide End | Peptide Sequence | Source |
|---|---|---|---|---|---|
| PAp00028708 | 19 | 192 | 210 | WSPHHNCTQVATANDTTLR | Peptide Atlas |
| TSSC1_HUMAN_1 | 16 | 1 | 16 | MEDDAPVIYGLEFQAR | PRIDE |