AutismKB 2.0

Annotation Detail for RNF208


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Basic Information Top
Gene Symbol:RNF208 ( DKFZp761H1710,MGC88636 )
Gene Full Name: ring finger protein 208
Band: 9q34.3
Quick LinksEntrez ID:727800; OMIM: NA; Uniprot ID:RN208_HUMAN; ENSEMBL ID: ENSG00000212864; HGNC ID: 25420
Relate to Another Database: SFARIGene; denovo-db
Unigene EST Top
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
embryoid body0 / 707610 
blastocyst0 / 623190 
fetus5 / 5640128
neonate0 / 310970 
infant0 / 236200 
juvenile0 / 555560 
adult19 / 19391219
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
adrenal tumor0 / 127940 
bladder carcinoma0 / 174750 
breast (mammary gland) tumor2 / 9417821
cervical tumor0 / 343660 
chondrosarcoma2 / 8282324
colorectal tumor1 / 1142468
esophageal tumor0 / 172900 
gastrointestinal tumor1 / 1193698
germ cell tumor2 / 2638457
glioma2 / 10688318
head and neck tumor0 / 1363020 
kidney tumor0 / 689590 
leukemia1 / 9584210
liver tumor0 / 963590 
lung tumor0 / 1031270 
lymphoma1 / 7175513
non-neoplasia1 / 9725010
normal24 / 33603077
ovarian tumor0 / 766820 
pancreatic tumor0 / 1046160 
primitive neuroectodermal tumor of the CNS0 / 1256800 
prostate cancer1 / 1026809
retinoblastoma0 / 463560 
skin tumor0 / 1249490 
soft tissue/muscle tissue tumor0 / 1251910 
uterine tumor0 / 902570 
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
adipose tissue0 / 131060 
adrenal gland0 / 331970 
ascites0 / 400150 
bladder0 / 297570 
blood1 / 1234788
bone2 / 7165527
bone marrow0 / 488010 
brain6 / 11009895
cervix0 / 481710 
connective tissue0 / 1492550 
ear0 / 162120 
embryonic tissue0 / 2157220 
esophagus0 / 202090 
eye8 / 21105437
heart0 / 896260 
intestine2 / 2344728
kidney0 / 2117770 
larynx0 / 241450 
liver0 / 2077430 
lung5 / 33697414
lymph0 / 442700 
lymph node0 / 916100 
mammary gland2 / 15327113
mouth0 / 670520 
muscle0 / 1077150 
nerve0 / 157680 
ovary0 / 1020510 
pancreas5 / 21481223
parathyroid1 / 2053948
pharynx0 / 413280 
pituitary gland0 / 165850 
placenta0 / 2808250 
prostate1 / 1893455
salivary gland0 / 201550 
skin0 / 2105740 
spleen0 / 539520 
stomach3 / 9661931
testis0 / 3304420 
thymus0 / 811310 
thyroid0 / 474730 
tonsil0 / 169990 
trachea0 / 524130 
umbilical cord0 / 136800 
uterus0 / 2328780 
vascular0 / 517800 
Microarray in BioGPS Top
Select probe  
  • Microarray Platform: GeneAtlas U133A, gcrma
  • Affymatrix Probe ID: 221273_s_at
Cell line Expression level Expression bar
721_B_lymphoblasts4
Adipocyte3.15
AdrenalCortex3.25
Adrenalgland2.65
Amygdala27.1
Appendix2.95
AtrioventricularNode2.35
BDCA4+_DentriticCells3.5
Bonemarrow3.05
BronchialEpithelialCells3.15
CD105+_Endothelial3.15
CD14+_Monocytes3.35
CD19+_BCells(neg._sel.)3.4
CD33+_Myeloid4
CD34+4
CD4+_Tcells3.4
CD56+_NKCells3.75
CD71+_EarlyErythroid2.85
CD8+_Tcells3
CardiacMyocytes3.95
Caudatenucleus8.3
Cerebellum3.4
CerebellumPeduncles3.6
CiliaryGanglion2.15
CingulateCortex8.65
Colorectaladenocarcinoma3.15
DorsalRootGanglion2.2
FetalThyroid3.05
Fetalbrain6.75
Fetalliver2.7
Fetallung2.65
GlobusPallidus2.3
Heart4
Hypothalamus4.05
Kidney2.5
Leukemia_chronicMyelogenousK-5622.85
Leukemia_promyelocytic-HL-602.8
Leukemialymphoblastic(MOLT-4)2.55
Liver4.15
Lung3.5
Lymphnode2.75
Lymphoma_burkitts(Daudi)4.05
Lymphoma_burkitts(Raji)4.4
MedullaOblongata7.2
OccipitalLobe4.6
OlfactoryBulb2.5
Ovary2.05
Pancreas2.5
PancreaticIslet3.35
ParietalLobe3.95
Pituitary3.7
Placenta3.25
Pons3
PrefrontalCortex41.1
Prostate3.75
Salivarygland2.5
SkeletalMuscle3.6
Skin2.35
SmoothMuscle3.6
Spinalcord3.4
SubthalamicNucleus2.85
SuperiorCervicalGanglion3.5
TemporalLobe4.4
Testis2.7
TestisGermCell2.65
TestisIntersitial2.45
TestisLeydigCell2.9
TestisSeminiferousTubule2.7
Thalamus6.65
Thymus2.5
Thyroid4
Tongue3.5
Tonsil3.05
Trachea2.65
TrigeminalGanglion2.9
Uterus2.65
UterusCorpus2.75
WholeBlood3.5
Wholebrain14.6
colon3.2
pineal_day3.92
pineal_night3.86
retina3.825
small_intestine3.05
Allen Brain Atlas Top
Human Whole Brain Microarrayview in Allen Brain Atlas
  • Probe id     Donor id      
  • Probe name: A_23_P170464
  • Donor H0351.2001
  • Sex: Male     Age: 24 years     Race/Ethnicity: African American     Handedness: Left
  • Tissue Receipt Date: 7/29/2009     Serology: Pass      Tissue pH :6.72     Additional Medical Information :History of asthma
  • Postmortem Interval: 23 hours (estimated time of death to time that tissue is frozen)
  • Toxicology: Positive for atropine and caffeine, at levels usually not toxicologically significant
Tissue Expression(mean ± stddev) Expression Bar
Amygdala6.25 ± 0.48
Basal Forebrain6.14 ± 0.42
Basal Part of Pons6.92 ± 0.34
Cerebellar Cortex6.3 ± 0.36
Cerebellar Nuclei6.48 ± 0.8
Claustrum5.88 ± 0.55
Epithalamus5.87 ± 0.39
Frontal Lobe6.57 ± 0.43
Globus Pallidus5.62 ± 0.41
Hypothalamus6.18 ± 0.43
Insula6.47 ± 0.35
Limbic Lobe6.41 ± 0.5
Mesencephalon6.15 ± 0.46
Myelencephalon6.34 ± 0.55
Occipital Lobe6.04 ± 0.58
Parietal Lobe6.47 ± 0.5
Pontine Tegmentum6.17 ± 0.45
Striatum5.85 ± 0.51
Subthalamus6.04 ± 0.71
Temporal Lobe6.57 ± 0.37
Thalamus6.28 ± 0.39
White Matter4.61 ± 0.33
Mouse Brain ISH
Gene Symbol Brain Structure ID Brain Structure Name Express Desity/Level (Meatured by ISH) Express Bar
1110061N23RikCBCerebellum97.13
100
1110061N23RikCTXCerebral cortex100
100
1110061N23RikHIPHippocampal region100
100
1110061N23RikHPFHippocampal formation100
100
1110061N23RikHYHypothalamus100
100
1110061N23RikLSXLateral septal complex100
100
1110061N23RikMBMidbrain100
100
1110061N23RikMYMedulla100
100
1110061N23RikOLFOlfactory bulb100
100
1110061N23RikPPons100
100
1110061N23RikPALPallidum100
100
1110061N23RikRHPRetrohippocampal region100
100
1110061N23RiksAMYStriatum-like amygdalar nuclei100
100
1110061N23RikSTRStriatum100
100
1110061N23RikSTRdStriatum dorsal region100
100
1110061N23RikSTRvStriatum ventral region100
100
1110061N23RikTHThalamus100
100
Peptide Top

Simple Query:


  (e.g. CHD8)

Syndromic Genes

Non-syndromic Genes

AutismKB Statistics

  • Studies: 1,036
  • Genes: 1,379
  • CNVs/SVs: 5,420
  • SNVs/Indels: 11,669
  • de novo Mutations: 5,669
  • Mosaics: 789
  • Linkage Regions: 172
  • Paper Collected: 6/30/2018
  • Last Update: 8/26/2018


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