AutismKB 2.0

Annotation Detail for TUBG1


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Basic Information Top
Gene Symbol:TUBG1 ( GCP-1,TUBG,TUBGCP1 )
Gene Full Name: tubulin, gamma 1
Band: 17q21.31
Quick LinksEntrez ID:7283; OMIM: 191135; Uniprot ID:TBG1_HUMAN; ENSEMBL ID: ENSG00000131462; HGNC ID: 12417
Relate to Another Database: SFARIGene; denovo-db
Unigene EST Top
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
embryoid body7 / 7076198
blastocyst9 / 62319144
fetus48 / 56401285
neonate0 / 310970 
infant11 / 23620465
juvenile5 / 5555689
adult180 / 193912192
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
adrenal tumor0 / 127940 
bladder carcinoma0 / 174750 
breast (mammary gland) tumor11 / 94178116
cervical tumor5 / 34366145
chondrosarcoma11 / 82823132
colorectal tumor9 / 11424678
esophageal tumor0 / 172900 
gastrointestinal tumor17 / 119369142
germ cell tumor26 / 26384598
glioma13 / 106883121
head and neck tumor28 / 136302205
kidney tumor8 / 68959116
leukemia7 / 9584273
liver tumor9 / 9635993
lung tumor19 / 103127184
lymphoma11 / 71755153
non-neoplasia6 / 9725061
normal295 / 336030787
ovarian tumor2 / 7668226
pancreatic tumor6 / 10461657
primitive neuroectodermal tumor of the CNS33 / 125680262
prostate cancer2 / 10268019
retinoblastoma12 / 46356258
skin tumor21 / 124949168
soft tissue/muscle tissue tumor24 / 125191191
uterine tumor6 / 9025766
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
adipose tissue1 / 1310676
adrenal gland0 / 331970 
ascites6 / 40015149
bladder0 / 297570 
blood10 / 12347880
bone11 / 71655153
bone marrow3 / 4880161
brain74 / 110098967
cervix7 / 48171145
connective tissue8 / 14925553
ear0 / 162120 
embryonic tissue23 / 215722106
esophagus0 / 202090 
eye22 / 211054104
heart3 / 8962633
intestine23 / 23447298
kidney22 / 211777103
larynx6 / 24145248
liver16 / 20774377
lung43 / 336974127
lymph9 / 44270203
lymph node8 / 9161087
mammary gland13 / 15327184
mouth5 / 6705274
muscle5 / 10771546
nerve0 / 157680 
ovary3 / 10205129
pancreas8 / 21481237
parathyroid0 / 205390 
pharynx11 / 41328266
pituitary gland1 / 1658560
placenta38 / 280825135
prostate7 / 18934536
salivary gland2 / 2015599
skin25 / 210574118
spleen1 / 5395218
stomach12 / 96619124
testis73 / 330442220
thymus3 / 8113136
thyroid5 / 47473105
tonsil3 / 16999176
trachea0 / 524130 
umbilical cord0 / 136800 
uterus34 / 232878145
vascular0 / 517800 
Microarray in BioGPS Top
Select probe  
  • Microarray Platform: GeneAtlas U133A, gcrma
  • Affymatrix Probe ID: 201714_at
Cell line Expression level Expression bar
721_B_lymphoblasts902.25
Adipocyte65.25
AdrenalCortex16.4
Adrenalgland37.9
Amygdala52.05
Appendix13.15
AtrioventricularNode9.35
BDCA4+_DentriticCells55.55
Bonemarrow149.15
BronchialEpithelialCells158
CD105+_Endothelial809.4
CD14+_Monocytes9.65
CD19+_BCells(neg._sel.)10.2
CD33+_Myeloid12.75
CD34+113.95
CD4+_Tcells10.65
CD56+_NKCells12.45
CD71+_EarlyErythroid1901.8
CD8+_Tcells9.1
CardiacMyocytes125.05
Caudatenucleus23.9
Cerebellum33.65
CerebellumPeduncles31.25
CiliaryGanglion8.85
CingulateCortex41.1
Colorectaladenocarcinoma217.5
DorsalRootGanglion9.2
FetalThyroid19.55
Fetalbrain30.55
Fetalliver166.1
Fetallung33.05
GlobusPallidus13.4
Heart131.75
Hypothalamus47.95
Kidney51.4
Leukemia_chronicMyelogenousK-562133.5
Leukemia_promyelocytic-HL-60165
Leukemialymphoblastic(MOLT-4)268.3
Liver129.3
Lung71.05
Lymphnode9.8
Lymphoma_burkitts(Daudi)185
Lymphoma_burkitts(Raji)144.65
MedullaOblongata20.6
OccipitalLobe21.55
OlfactoryBulb9.65
Ovary8.3
Pancreas14.15
PancreaticIslet37.1
ParietalLobe24.25
Pituitary23.5
Placenta57.45
Pons14.3
PrefrontalCortex39.6
Prostate75.4
Salivarygland15.1
SkeletalMuscle19.9
Skin18.45
SmoothMuscle119.55
Spinalcord13.1
SubthalamicNucleus12.3
SuperiorCervicalGanglion15.15
TemporalLobe31.15
Testis864.4
TestisGermCell828.3
TestisIntersitial1115.85
TestisLeydigCell536.25
TestisSeminiferousTubule685.3
Thalamus48.3
Thymus71.2
Thyroid34.8
Tongue17.8
Tonsil12.4
Trachea12
TrigeminalGanglion11.65
Uterus14.55
UterusCorpus14.25
WholeBlood11.65
Wholebrain129.15
colon65.45
pineal_day89.04
pineal_night53.54
retina25.625
small_intestine82.85
Allen Brain Atlas Top
Human Whole Brain Microarrayview in Allen Brain Atlas
  • Probe id     Donor id      
  • Probe name: A_23_P152768
  • Donor H0351.2001
  • Sex: Male     Age: 24 years     Race/Ethnicity: African American     Handedness: Left
  • Tissue Receipt Date: 7/29/2009     Serology: Pass      Tissue pH :6.72     Additional Medical Information :History of asthma
  • Postmortem Interval: 23 hours (estimated time of death to time that tissue is frozen)
  • Toxicology: Positive for atropine and caffeine, at levels usually not toxicologically significant
Tissue Expression(mean ± stddev) Expression Bar
Amygdala5.9 ± 0.55
Basal Forebrain6.05 ± 0.36
Basal Part of Pons6.12 ± 0.62
Cerebellar Cortex5.78 ± 0.43
Cerebellar Nuclei6.24 ± 0.41
Claustrum6.46 ± 0.69
Epithalamus5.25 ± 0.5
Frontal Lobe6.15 ± 0.53
Globus Pallidus5.89 ± 0.41
Hypothalamus5.7 ± 0.54
Insula5.85 ± 0.52
Limbic Lobe5.96 ± 0.54
Mesencephalon6.06 ± 0.51
Myelencephalon6.04 ± 0.51
Occipital Lobe5.71 ± 0.52
Parietal Lobe6 ± 0.45
Pontine Tegmentum5.87 ± 0.48
Striatum5.76 ± 0.57
Subthalamus6.11 ± 0.34
Temporal Lobe6 ± 0.42
Thalamus6.16 ± 0.52
White Matter5.17 ± 0.22
Mouse Brain ISH
Gene Symbol Brain Structure ID Brain Structure Name Express Desity/Level (Meatured by ISH) Express Bar
Tubg1CBCerebellum13.93
17.66
Tubg1CTXCerebral cortex40.97
31.24
Tubg1HIPHippocampal region35.32
39.92
Tubg1HPFHippocampal formation40.48
40.23
Tubg1HYHypothalamus6.23
5.1
Tubg1LSXLateral septal complex0.08
0.07
Tubg1MBMidbrain7.1
7.54
Tubg1MYMedulla6.76
10.61
Tubg1OLFOlfactory bulb24.34
20.8
Tubg1PPons8.8
12.06
Tubg1PALPallidum7.5
7.68
Tubg1RHPRetrohippocampal region48.31
40.51
Tubg1sAMYStriatum-like amygdalar nuclei13.35
9.61
Tubg1STRStriatum7.46
5.59
Tubg1STRdStriatum dorsal region8.14
6.28
Tubg1STRvStriatum ventral region3.88
2.71
Tubg1THThalamus15.1
12.99
Peptide Top
Peptide Name Peptide Lengh Peptide Start Peptide End Peptide Sequence Source
PAp00001882 32 125 156 EADGSDSLEGFVLCHSIAGGTGSGLGSYLLER Peptide Atlas
TBG1_HUMAN_373 18 373 390 VSGLMMANHTSISSLFER PRIDE
TBG1_HUMAN_416 10 416 425 DNFDEMDTSR PRIDE

Simple Query:


  (e.g. CHD8)

Syndromic Genes

Non-syndromic Genes

AutismKB Statistics

  • Studies: 1,036
  • Genes: 1,379
  • CNVs/SVs: 5,420
  • SNVs/Indels: 11,669
  • de novo Mutations: 5,669
  • Mosaics: 789
  • Linkage Regions: 172
  • Paper Collected: 6/30/2018
  • Last Update: 8/26/2018


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