AutismKB 2.0

Annotation Detail for EIF3CL


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Basic Information Top
Gene Symbol:EIF3CL ( - )
Gene Full Name: eukaryotic translation initiation factor 3, subunit C-like
Band: 16p12.1
Quick LinksEntrez ID:728689; OMIM: NA; Uniprot ID:B5ME19_HUMAN; ENSEMBL ID: ENSG00000205609; HGNC ID: 26347
Relate to Another Database: SFARIGene; denovo-db
Unigene EST Top
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
embryoid body10 / 70761141
blastocyst10 / 62319160
fetus106 / 564012187
neonate3 / 3109796
infant5 / 23620211
juvenile14 / 55556251
adult560 / 1939121288
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
adrenal tumor0 / 127940 
bladder carcinoma0 / 174750 
breast (mammary gland) tumor45 / 94178477
cervical tumor27 / 34366785
chondrosarcoma18 / 82823217
colorectal tumor75 / 114246656
esophageal tumor1 / 1729057
gastrointestinal tumor64 / 119369536
germ cell tumor88 / 263845333
glioma41 / 106883383
head and neck tumor46 / 136302337
kidney tumor22 / 68959319
leukemia28 / 95842292
liver tumor49 / 96359508
lung tumor66 / 103127639
lymphoma21 / 71755292
non-neoplasia13 / 97250133
normal513 / 3360307152
ovarian tumor49 / 76682639
pancreatic tumor33 / 104616315
primitive neuroectodermal tumor of the CNS39 / 125680310
prostate cancer26 / 102680253
retinoblastoma34 / 46356733
skin tumor105 / 124949840
soft tissue/muscle tissue tumor46 / 125191367
uterine tumor46 / 90257509
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
adipose tissue8 / 13106610
adrenal gland3 / 3319790
ascites25 / 40015624
bladder2 / 2975767
blood28 / 123478226
bone25 / 71655348
bone marrow5 / 48801102
brain148 / 1100989134
cervix27 / 48171560
connective tissue16 / 149255107
ear0 / 162120 
embryonic tissue47 / 215722217
esophagus1 / 2020949
eye77 / 211054364
heart33 / 89626368
intestine105 / 234472447
kidney44 / 211777207
larynx7 / 24145289
liver67 / 207743322
lung108 / 336974320
lymph18 / 44270406
lymph node15 / 91610163
mammary gland63 / 153271411
mouth13 / 67052193
muscle43 / 107715399
nerve1 / 1576863
ovary52 / 102051509
pancreas43 / 214812200
parathyroid0 / 205390 
pharynx0 / 413280 
pituitary gland8 / 16585482
placenta61 / 280825217
prostate37 / 189345195
salivary gland1 / 2015549
skin117 / 210574555
spleen9 / 53952166
stomach38 / 96619393
testis67 / 330442202
thymus7 / 8113186
thyroid27 / 47473568
tonsil6 / 16999352
trachea0 / 524130 
umbilical cord20 / 136801461
uterus73 / 232878313
vascular1 / 5178019
Microarray in BioGPS Top
Select probe  
  • Microarray Platform: GeneAtlas U133A, gcrma
  • Affymatrix Probe ID: 200647_x_at
Cell line Expression level Expression bar
721_B_lymphoblasts2278.15
Adipocyte628.85
AdrenalCortex335.15
Adrenalgland403.8
Amygdala923.3
Appendix265.5
AtrioventricularNode67.25
BDCA4+_DentriticCells1026.6
Bonemarrow488.5
BronchialEpithelialCells1170.8
CD105+_Endothelial908.3
CD14+_Monocytes926.75
CD19+_BCells(neg._sel.)808.75
CD33+_Myeloid744.6
CD34+1249.8
CD4+_Tcells765.65
CD56+_NKCells725.75
CD71+_EarlyErythroid935.25
CD8+_Tcells617.35
CardiacMyocytes740.45
Caudatenucleus403.65
Cerebellum287.6
CerebellumPeduncles334.95
CiliaryGanglion103.35
CingulateCortex404.7
Colorectaladenocarcinoma1691.85
DorsalRootGanglion137.85
FetalThyroid807.3
Fetalbrain782.6
Fetalliver345.95
Fetallung691.85
GlobusPallidus235.55
Heart686.75
Hypothalamus577.3
Kidney570.85
Leukemia_chronicMyelogenousK-562982.05
Leukemia_promyelocytic-HL-60941.1
Leukemialymphoblastic(MOLT-4)821.85
Liver877.8
Lung1951.5
Lymphnode425.2
Lymphoma_burkitts(Daudi)876.15
Lymphoma_burkitts(Raji)1326.1
MedullaOblongata370.6
OccipitalLobe398.15
OlfactoryBulb256.15
Ovary367.95
Pancreas396.4
PancreaticIslet911.65
ParietalLobe476.95
Pituitary634.8
Placenta491.6
Pons257.75
PrefrontalCortex1148.75
Prostate1909.05
Salivarygland356.8
SkeletalMuscle360.25
Skin254.4
SmoothMuscle637.15
Spinalcord404.75
SubthalamicNucleus391.35
SuperiorCervicalGanglion156.25
TemporalLobe306.8
Testis1061.8
TestisGermCell1455.1
TestisIntersitial265.5
TestisLeydigCell428.35
TestisSeminiferousTubule596.35
Thalamus604.55
Thymus736.75
Thyroid1600
Tongue328.6
Tonsil374.4
Trachea403.7
TrigeminalGanglion98
Uterus928.75
UterusCorpus236
WholeBlood366.25
Wholebrain827.1
colon678.1
pineal_day722
pineal_night592.42
retina631.45
small_intestine579.8
Allen Brain Atlas Top
Human Whole Brain Microarrayview in Allen Brain Atlas
  • Probe id     Donor id      
  • Probe name: A_23_P77568
  • Donor H0351.2001
  • Sex: Male     Age: 24 years     Race/Ethnicity: African American     Handedness: Left
  • Tissue Receipt Date: 7/29/2009     Serology: Pass      Tissue pH :6.72     Additional Medical Information :History of asthma
  • Postmortem Interval: 23 hours (estimated time of death to time that tissue is frozen)
  • Toxicology: Positive for atropine and caffeine, at levels usually not toxicologically significant
Tissue Expression(mean ± stddev) Expression Bar
Amygdala12.83 ± 0.28
Basal Forebrain12.6 ± 0.12
Basal Part of Pons12.98 ± 0.12
Cerebellar Cortex12.57 ± 0.11
Cerebellar Nuclei12.76 ± 0.23
Claustrum12.83 ± 0.16
Epithalamus12.57 ± 0.28
Frontal Lobe12.85 ± 0.22
Globus Pallidus12.54 ± 0.37
Hypothalamus12.71 ± 0.18
Insula12.97 ± 0.18
Limbic Lobe12.93 ± 0.3
Mesencephalon12.71 ± 0.27
Myelencephalon12.73 ± 0.29
Occipital Lobe12.53 ± 0.23
Parietal Lobe12.72 ± 0.26
Pontine Tegmentum12.73 ± 0.26
Striatum12.59 ± 0.36
Subthalamus12.8 ± 0.14
Temporal Lobe12.88 ± 0.25
Thalamus12.64 ± 0.16
White Matter12.15 ± 0.07
Mouse Brain ISH
Peptide Top
Peptide Name Peptide Lengh Peptide Start Peptide End Peptide Sequence Source
PAp00001134 10 79 88 CLEEFELLGK Peptide Atlas

Simple Query:


  (e.g. CHD8)

Syndromic Genes

Non-syndromic Genes

AutismKB Statistics

  • Studies: 1,036
  • Genes: 1,379
  • CNVs/SVs: 5,420
  • SNVs/Indels: 11,669
  • de novo Mutations: 5,669
  • Mosaics: 789
  • Linkage Regions: 172
  • Paper Collected: 6/30/2018
  • Last Update: 8/26/2018


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