AutismKB 2.0

Annotation Detail for TULP3


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Basic Information Top
Gene Symbol:TULP3 ( MGC45295,TUBL3 )
Gene Full Name: tubby like protein 3
Band: 12p13.33
Quick LinksEntrez ID:7289; OMIM: 604730; Uniprot ID:TULP3_HUMAN; ENSEMBL ID: ENSG00000078246; HGNC ID: 12425
Relate to Another Database: SFARIGene; denovo-db
Unigene EST Top
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
embryoid body3 / 7076142
blastocyst0 / 623190 
fetus9 / 56401215
neonate3 / 3109796
infant0 / 236200 
juvenile0 / 555560 
adult69 / 193912135
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
adrenal tumor0 / 127940 
bladder carcinoma0 / 174750 
breast (mammary gland) tumor3 / 9417831
cervical tumor0 / 343660 
chondrosarcoma3 / 8282336
colorectal tumor1 / 1142468
esophageal tumor0 / 172900 
gastrointestinal tumor5 / 11936941
germ cell tumor26 / 26384598
glioma5 / 10688346
head and neck tumor4 / 13630229
kidney tumor0 / 689590 
leukemia0 / 958420 
liver tumor1 / 9635910
lung tumor0 / 1031270 
lymphoma0 / 717550 
non-neoplasia3 / 9725030
normal66 / 336030719
ovarian tumor9 / 76682117
pancreatic tumor0 / 1046160 
primitive neuroectodermal tumor of the CNS0 / 1256800 
prostate cancer1 / 1026809
retinoblastoma1 / 4635621
skin tumor1 / 1249498
soft tissue/muscle tissue tumor0 / 1251910 
uterine tumor4 / 9025744
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
adipose tissue0 / 131060 
adrenal gland0 / 331970 
ascites1 / 4001524
bladder0 / 297570 
blood2 / 12347816
bone4 / 7165555
bone marrow1 / 4880120
brain15 / 110098913
cervix4 / 4817183
connective tissue4 / 14925526
ear0 / 162120 
embryonic tissue3 / 21572213
esophagus0 / 202090 
eye7 / 21105433
heart2 / 8962622
intestine5 / 23447221
kidney2 / 2117779
larynx2 / 2414582
liver5 / 20774324
lung14 / 33697441
lymph0 / 442700 
lymph node0 / 916100 
mammary gland3 / 15327119
mouth1 / 6705214
muscle0 / 1077150 
nerve0 / 157680 
ovary11 / 102051107
pancreas2 / 2148129
parathyroid0 / 205390 
pharynx0 / 413280 
pituitary gland1 / 1658560
placenta4 / 28082514
prostate1 / 1893455
salivary gland0 / 201550 
skin2 / 2105749
spleen0 / 539520 
stomach4 / 9661941
testis14 / 33044242
thymus1 / 8113112
thyroid2 / 4747342
tonsil0 / 169990 
trachea0 / 524130 
umbilical cord1 / 1368073
uterus13 / 23287855
vascular0 / 517800 
Microarray in BioGPS Top
Select probe  
  • Microarray Platform: GeneAtlas U133A, gcrma
  • Affymatrix Probe ID: 205854_at
Cell line Expression level Expression bar
721_B_lymphoblasts12.15
Adipocyte7.5
AdrenalCortex19.5
Adrenalgland22.9
Amygdala6.9
Appendix13.1
AtrioventricularNode5.85
BDCA4+_DentriticCells6.5
Bonemarrow6.7
BronchialEpithelialCells8.1
CD105+_Endothelial8.5
CD14+_Monocytes6.9
CD19+_BCells(neg._sel.)6.7
CD33+_Myeloid7.9
CD34+8.45
CD4+_Tcells7.2
CD56+_NKCells8.75
CD71+_EarlyErythroid6
CD8+_Tcells6.45
CardiacMyocytes10.9
Caudatenucleus6.35
Cerebellum12.85
CerebellumPeduncles18.05
CiliaryGanglion5.55
CingulateCortex8.15
Colorectaladenocarcinoma7.5
DorsalRootGanglion5.9
FetalThyroid40.15
Fetalbrain7.5
Fetalliver5.85
Fetallung13.7
GlobusPallidus5.1
Heart9.1
Hypothalamus7.95
Kidney9.8
Leukemia_chronicMyelogenousK-5625.85
Leukemia_promyelocytic-HL-606.05
Leukemialymphoblastic(MOLT-4)5.65
Liver9.3
Lung8
Lymphnode5.55
Lymphoma_burkitts(Daudi)11.35
Lymphoma_burkitts(Raji)9.6
MedullaOblongata6.3
OccipitalLobe6.25
OlfactoryBulb28.55
Ovary7.65
Pancreas7.4
PancreaticIslet8.1
ParietalLobe7.25
Pituitary13.3
Placenta12.5
Pons6.55
PrefrontalCortex24.15
Prostate16.5
Salivarygland5.65
SkeletalMuscle8.15
Skin7.7
SmoothMuscle27.3
Spinalcord7.6
SubthalamicNucleus7.05
SuperiorCervicalGanglion9.1
TemporalLobe6.9
Testis9.35
TestisGermCell6.25
TestisIntersitial5.8
TestisLeydigCell8.4
TestisSeminiferousTubule8.75
Thalamus6.9
Thymus6.6
Thyroid8.35
Tongue7.7
Tonsil6.55
Trachea9.5
TrigeminalGanglion9.6
Uterus45.25
UterusCorpus34.2
WholeBlood6.85
Wholebrain5.8
colon11.9
pineal_day8.22
pineal_night8.06
retina12.1
small_intestine6.7
Allen Brain Atlas Top
Human Whole Brain Microarrayview in Allen Brain Atlas
  • Probe id     Donor id      
  • Probe name: A_23_P420782
  • Donor H0351.2001
  • Sex: Male     Age: 24 years     Race/Ethnicity: African American     Handedness: Left
  • Tissue Receipt Date: 7/29/2009     Serology: Pass      Tissue pH :6.72     Additional Medical Information :History of asthma
  • Postmortem Interval: 23 hours (estimated time of death to time that tissue is frozen)
  • Toxicology: Positive for atropine and caffeine, at levels usually not toxicologically significant
Tissue Expression(mean ± stddev) Expression Bar
Amygdala2.31 ± 1.2
Basal Forebrain1.8 ± 0.29
Basal Part of Pons1.58 ± 0.6
Cerebellar Cortex2.63 ± 0.48
Cerebellar Nuclei2.36 ± 0.88
Claustrum2.72 ± 0.82
Epithalamus2.14 ± 0.63
Frontal Lobe1.85 ± 0.85
Globus Pallidus2.35 ± 1.15
Hypothalamus2.06 ± 0.5
Insula1.9 ± 0.58
Limbic Lobe1.92 ± 0.84
Mesencephalon2.09 ± 0.77
Myelencephalon2.01 ± 0.74
Occipital Lobe2.1 ± 0.87
Parietal Lobe1.9 ± 0.86
Pontine Tegmentum2.07 ± 0.86
Striatum1.9 ± 0.73
Subthalamus2.19 ± 0.43
Temporal Lobe1.83 ± 0.76
Thalamus1.88 ± 0.61
White Matter3.21 ± 0.85
Mouse Brain ISH
Gene Symbol Brain Structure ID Brain Structure Name Express Desity/Level (Meatured by ISH) Express Bar
Tulp3CBCerebellum12.43
12.94
Tulp3CTXCerebral cortex3.45
1.51
Tulp3HIPHippocampal region1.69
1.63
Tulp3HPFHippocampal formation1.62
1.43
Tulp3HYHypothalamus0.4
0.3
Tulp3LSXLateral septal complex1.11
0.27
Tulp3MBMidbrain2.31
1.83
Tulp3MYMedulla4.43
2.61
Tulp3OLFOlfactory bulb7.28
5.44
Tulp3PPons3.41
2.05
Tulp3PALPallidum0.42
0.18
Tulp3RHPRetrohippocampal region1.42
1.08
Tulp3sAMYStriatum-like amygdalar nuclei0.66
0.84
Tulp3STRStriatum0.57
0.35
Tulp3STRdStriatum dorsal region0.44
0.32
Tulp3STRvStriatum ventral region0.8
0.26
Tulp3THThalamus1.91
0.87
Peptide Top

Simple Query:


  (e.g. CHD8)

Syndromic Genes

Non-syndromic Genes

AutismKB Statistics

  • Studies: 1,036
  • Genes: 1,379
  • CNVs/SVs: 5,420
  • SNVs/Indels: 11,669
  • de novo Mutations: 5,669
  • Mosaics: 789
  • Linkage Regions: 172
  • Paper Collected: 6/30/2018
  • Last Update: 8/26/2018


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