Annotation Detail for SHISA9
Basic Information Top
| Gene Symbol: | SHISA9 ( CKAMP44,DKFZp686D24206,DKFZp686E24206,FLJ10015,FLJ37653,FLJ58277,FLJ99079,FLJ99234 ) |
|---|---|
| Gene Full Name: | shisa homolog 9 (Xenopus laevis) |
| Band: | 16p13.12 |
| Quick Links | Entrez ID:729993; OMIM: 613346; Uniprot ID:SHSA9_HUMAN; ENSEMBL ID: ENSG00000237515; HGNC ID: 37231 |
| Relate to Another Database: | SFARIGene; denovo-db |
- Unigene ID: Hs.130661
| Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
|---|---|---|---|
 | |||
| embryoid body | 0 / 70761 | 0 | |
| blastocyst | 0 / 62319 | 0 | |
| fetus | 2 / 564012 | 3 |  |
| neonate | 0 / 31097 | 0 | |
| infant | 0 / 23620 | 0 | |
| juvenile | 0 / 55556 | 0 | |
| adult | 0 / 1939121 | 0 |
| Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
|---|---|---|---|
| |||
| adrenal tumor | 0 / 12794 | 0 | |
| bladder carcinoma | 0 / 17475 | 0 | |
| breast (mammary gland) tumor | 0 / 94178 | 0 | |
| cervical tumor | 0 / 34366 | 0 | |
| chondrosarcoma | 0 / 82823 | 0 | |
| colorectal tumor | 0 / 114246 | 0 | |
| esophageal tumor | 0 / 17290 | 0 | |
| gastrointestinal tumor | 0 / 119369 | 0 | |
| germ cell tumor | 0 / 263845 | 0 | |
| glioma | 4 / 106883 | 37 |  |
| head and neck tumor | 0 / 136302 | 0 | |
| kidney tumor | 0 / 68959 | 0 | |
| leukemia | 0 / 95842 | 0 | |
| liver tumor | 0 / 96359 | 0 | |
| lung tumor | 0 / 103127 | 0 | |
| lymphoma | 0 / 71755 | 0 | |
| non-neoplasia | 0 / 97250 | 0 | |
| normal | 6 / 3360307 | 1 |  |
| ovarian tumor | 0 / 76682 | 0 | |
| pancreatic tumor | 0 / 104616 | 0 | |
| primitive neuroectodermal tumor of the CNS | 0 / 125680 | 0 | |
| prostate cancer | 0 / 102680 | 0 | |
| retinoblastoma | 0 / 46356 | 0 | |
| skin tumor | 0 / 124949 | 0 | |
| soft tissue/muscle tissue tumor | 0 / 125191 | 0 | |
| uterine tumor | 0 / 90257 | 0 |
| Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
|---|---|---|---|
| |||
| adipose tissue | 0 / 13106 | 0 | |
| adrenal gland | 0 / 33197 | 0 | |
| ascites | 0 / 40015 | 0 | |
| bladder | 0 / 29757 | 0 | |
| blood | 0 / 123478 | 0 | |
| bone | 0 / 71655 | 0 | |
| bone marrow | 0 / 48801 | 0 | |
| brain | 5 / 1100989 | 4 | |
| cervix | 0 / 48171 | 0 | |
| connective tissue | 0 / 149255 | 0 | |
| ear | 0 / 16212 | 0 | |
| embryonic tissue | 0 / 215722 | 0 | |
| esophagus | 0 / 20209 | 0 | |
| eye | 2 / 211054 | 9 | |
| heart | 0 / 89626 | 0 | |
| intestine | 0 / 234472 | 0 | |
| kidney | 0 / 211777 | 0 | |
| larynx | 0 / 24145 | 0 | |
| liver | 0 / 207743 | 0 | |
| lung | 0 / 336974 | 0 | |
| lymph | 0 / 44270 | 0 | |
| lymph node | 0 / 91610 | 0 | |
| mammary gland | 0 / 153271 | 0 | |
| mouth | 0 / 67052 | 0 | |
| muscle | 0 / 107715 | 0 | |
| nerve | 0 / 15768 | 0 | |
| ovary | 0 / 102051 | 0 | |
| pancreas | 0 / 214812 | 0 | |
| parathyroid | 0 / 20539 | 0 | |
| pharynx | 0 / 41328 | 0 | |
| pituitary gland | 0 / 16585 | 0 | |
| placenta | 0 / 280825 | 0 | |
| prostate | 0 / 189345 | 0 | |
| salivary gland | 0 / 20155 | 0 | |
| skin | 0 / 210574 | 0 | |
| spleen | 0 / 53952 | 0 | |
| stomach | 0 / 96619 | 0 | |
| testis | 1 / 330442 | 3 | |
| thymus | 0 / 81131 | 0 | |
| thyroid | 0 / 47473 | 0 | |
| tonsil | 0 / 16999 | 0 | |
| trachea | 0 / 52413 | 0 | |
| umbilical cord | 0 / 13680 | 0 | |
| uterus | 0 / 232878 | 0 | |
| vascular | 0 / 51780 | 0 |
Microarray in - Probe name: A_32_P115515
- Donor H0351.2001
- Sex: Male Age: 24 years Race/Ethnicity: African American Handedness: Left
- Tissue Receipt Date: 7/29/2009 Serology: Pass Tissue pH :6.72 Additional Medical Information :History of asthma
- Postmortem Interval: 23 hours (estimated time of death to time that tissue is frozen)
- Toxicology: Positive for atropine and caffeine, at levels usually not toxicologically significant
| Tissue | Expression(mean ± stddev) | Expression Bar |
|---|---|---|
| Amygdala | 8.58 ± 0.77 | ![](../"images/bar_3.png"){kind=small}   |
| Basal Forebrain | 8.6 ± 0.32 | |
| Basal Part of Pons | 8.79 ± 0.29 | |
| Cerebellar Cortex | 7.44 ± 0.45 | |
| Cerebellar Nuclei | 7.21 ± 0.4 | |
| Claustrum | 9.16 ± 0.53 | |
| Epithalamus | 7.39 ± 0.71 | |
| Frontal Lobe | 8.15 ± 0.64 | |
| Globus Pallidus | 7.54 ± 0.92 | |
| Hypothalamus | 8.46 ± 0.58 | |
| Insula | 8.44 ± 0.26 | |
| Limbic Lobe | 8.19 ± 0.9 | |
| Mesencephalon | 8.16 ± 0.65 | |
| Myelencephalon | 8.25 ± 0.63 | |
| Occipital Lobe | 7.71 ± 0.75 | |
| Parietal Lobe | 8.21 ± 0.64 | |
| Pontine Tegmentum | 8.16 ± 0.68 | |
| Striatum | 9.09 ± 0.38 | |
| Subthalamus | 8.55 ± 0.04 | |
| Temporal Lobe | 8.48 ± 0.45 | |
| Thalamus | 8.92 ± 0.5 | |
| White Matter | 6.53 ± 1.02 | |
Mouse Brain ISH 
| Gene Symbol | Brain Structure ID | Brain Structure Name | Express Desity/Level (Meatured by ISH) | Express Bar |
|---|---|---|---|---|
| 2700045P11Rik | CB | Cerebellum | 23.25 |  |
| 41.34 | | |||
| 2700045P11Rik | CTX | Cerebral cortex | 69.48 | |
| 63.01 | | |||
| 2700045P11Rik | HIP | Hippocampal region | 76.52 | |
| 99.19 | | |||
| 2700045P11Rik | HPF | Hippocampal formation | 80.32 | |
| 97.47 | | |||
| 2700045P11Rik | HY | Hypothalamus | 59.28 | |
| 54.84 | | |||
| 2700045P11Rik | LSX | Lateral septal complex | 41.3 | |
| 35.96 | | |||
| 2700045P11Rik | MB | Midbrain | 44.08 | |
| 42.81 | | |||
| 2700045P11Rik | MY | Medulla | 28.89 | |
| 31.86 | | |||
| 2700045P11Rik | OLF | Olfactory bulb | 81.48 | |
| 81.33 | | |||
| 2700045P11Rik | P | Pons | 34.37 | |
| 36.8 | | |||
| 2700045P11Rik | PAL | Pallidum | 48.38 | |
| 50.31 | | |||
| 2700045P11Rik | RHP | Retrohippocampal region | 82.9 | |
| 91.61 | | |||
| 2700045P11Rik | sAMY | Striatum-like amygdalar nuclei | 64.3 | |
| 59.82 | | |||
| 2700045P11Rik | STR | Striatum | 87.96 | |
| 81.14 | | |||
| 2700045P11Rik | STRd | Striatum dorsal region | 89.38 | |
| 81.77 | | |||
| 2700045P11Rik | STRv | Striatum ventral region | 99.67 | |
| 90.11 | | |||
| 2700045P11Rik | TH | Thalamus | 94.03 | |
| 96.93 | |