AutismKB 2.0

Annotation Detail for UBC


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Basic Information Top
Gene Symbol:UBC ( HMG20 )
Gene Full Name: ubiquitin C
Band: 12q24.3
Quick LinksEntrez ID:7316; OMIM: 191340; Uniprot ID:UBC_HUMAN; ENSEMBL ID: ENSG00000150991; HGNC ID: 12468
Relate to Another Database: SFARIGene; denovo-db
Unigene EST Top
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
embryoid body66 / 70761932
blastocyst38 / 62319609
fetus1027 / 5640121820
neonate211 / 310976785
infant74 / 236203132
juvenile397 / 555567145
adult4209 / 19391212170
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
adrenal tumor50 / 127943908
bladder carcinoma22 / 174751258
breast (mammary gland) tumor323 / 941783429
cervical tumor96 / 343662793
chondrosarcoma137 / 828231654
colorectal tumor192 / 1142461680
esophageal tumor101 / 172905841
gastrointestinal tumor264 / 1193692211
germ cell tumor1239 / 2638454695
glioma346 / 1068833237
head and neck tumor191 / 1363021401
kidney tumor220 / 689593190
leukemia252 / 958422629
liver tumor222 / 963592303
lung tumor164 / 1031271590
lymphoma75 / 717551045
non-neoplasia459 / 972504719
normal10646 / 33603073168
ovarian tumor140 / 766821825
pancreatic tumor264 / 1046162523
primitive neuroectodermal tumor of the CNS537 / 1256804272
prostate cancer115 / 1026801119
retinoblastoma50 / 463561078
skin tumor158 / 1249491264
soft tissue/muscle tissue tumor142 / 1251911134
uterine tumor195 / 902572160
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
adipose tissue42 / 131063204
adrenal gland238 / 331977169
ascites103 / 400152574
bladder94 / 297573158
blood483 / 1234783911
bone61 / 71655851
bone marrow66 / 488011352
brain4678 / 11009894248
cervix132 / 481712740
connective tissue688 / 1492554609
ear19 / 162121171
embryonic tissue223 / 2157221033
esophagus117 / 202095789
eye180 / 211054852
heart268 / 896262990
intestine665 / 2344722836
kidney644 / 2117773040
larynx70 / 241452899
liver301 / 2077431448
lung816 / 3369742421
lymph33 / 44270745
lymph node45 / 91610491
mammary gland484 / 1532713157
mouth219 / 670523266
muscle133 / 1077151234
nerve57 / 157683614
ovary176 / 1020511724
pancreas334 / 2148121554
parathyroid6 / 20539292
pharynx22 / 41328532
pituitary gland18 / 165851085
placenta487 / 2808251734
prostate440 / 1893452323
salivary gland23 / 201551141
skin408 / 2105741937
spleen522 / 539529675
stomach262 / 966192711
testis1495 / 3304424524
thymus504 / 811316212
thyroid146 / 474733075
tonsil11 / 16999647
trachea307 / 524135857
umbilical cord35 / 136802558
uterus1006 / 2328784319
vascular200 / 517803862
Microarray in BioGPS Top
Select probe  
  • Microarray Platform: GeneAtlas U133A, gcrma
  • Affymatrix Probe ID: 211296_x_at
Cell line Expression level Expression bar
721_B_lymphoblasts9595.9
Adipocyte10993.5
AdrenalCortex7524.65
Adrenalgland8055.6
Amygdala9193.75
Appendix11190.1
AtrioventricularNode7269.4
BDCA4+_DentriticCells10213.6
Bonemarrow4368.75
BronchialEpithelialCells11422.95
CD105+_Endothelial3519.55
CD14+_Monocytes9121.05
CD19+_BCells(neg._sel.)7121.55
CD33+_Myeloid12626.45
CD34+5234.35
CD4+_Tcells8238.5
CD56+_NKCells8789.1
CD71+_EarlyErythroid7011.4
CD8+_Tcells7058.45
CardiacMyocytes9635.35
Caudatenucleus11221.2
Cerebellum6913.75
CerebellumPeduncles13842.2
CiliaryGanglion6342.2
CingulateCortex9204.2
Colorectaladenocarcinoma4601.75
DorsalRootGanglion5554
FetalThyroid6723.6
Fetalbrain10179.3
Fetalliver4014.6
Fetallung7693.75
GlobusPallidus7234.25
Heart7044.8
Hypothalamus15409.05
Kidney6788.75
Leukemia_chronicMyelogenousK-5627261.8
Leukemia_promyelocytic-HL-605420.65
Leukemialymphoblastic(MOLT-4)5953.85
Liver4048.4
Lung8978.6
Lymphnode6759.05
Lymphoma_burkitts(Daudi)7943.6
Lymphoma_burkitts(Raji)5140.3
MedullaOblongata11649.75
OccipitalLobe11736.55
OlfactoryBulb12480.6
Ovary4082.95
Pancreas5157.4
PancreaticIslet6937.65
ParietalLobe11584.8
Pituitary10040.65
Placenta9536.2
Pons10338.5
PrefrontalCortex12720.3
Prostate5444.1
Salivarygland4517.75
SkeletalMuscle14903.7
Skin3934.9
SmoothMuscle12043.95
Spinalcord15766.8
SubthalamicNucleus8610
SuperiorCervicalGanglion9666.25
TemporalLobe10801.3
Testis16532.7
TestisGermCell14933.85
TestisIntersitial16078.15
TestisLeydigCell15970.35
TestisSeminiferousTubule14582.5
Thalamus14289.25
Thymus6405.45
Thyroid6522.15
Tongue7260.6
Tonsil7360.85
Trachea6985.4
TrigeminalGanglion9693.9
Uterus5211.9
UterusCorpus13382.7
WholeBlood11226.3
Wholebrain8995.75
colon6404.85
pineal_day9513.62
pineal_night9780.24
retina14054.65
small_intestine6689.4
Allen Brain Atlas Top
Human Whole Brain Microarrayview in Allen Brain Atlas
  • Probe id     Donor id      
  • Probe name: A_23_P329740
  • Donor H0351.2001
  • Sex: Male     Age: 24 years     Race/Ethnicity: African American     Handedness: Left
  • Tissue Receipt Date: 7/29/2009     Serology: Pass      Tissue pH :6.72     Additional Medical Information :History of asthma
  • Postmortem Interval: 23 hours (estimated time of death to time that tissue is frozen)
  • Toxicology: Positive for atropine and caffeine, at levels usually not toxicologically significant
Tissue Expression(mean ± stddev) Expression Bar
Amygdala13.73 ± 0.2
Basal Forebrain13.8 ± 0.12
Basal Part of Pons14.12 ± 0.23
Cerebellar Cortex13.86 ± 0.27
Cerebellar Nuclei14.28 ± 0.21
Claustrum13.65 ± 0.37
Epithalamus14.3 ± 0.32
Frontal Lobe14.04 ± 0.27
Globus Pallidus13.97 ± 0.35
Hypothalamus14.18 ± 0.26
Insula14.22 ± 0.32
Limbic Lobe13.79 ± 0.36
Mesencephalon13.98 ± 0.29
Myelencephalon13.91 ± 0.28
Occipital Lobe13.61 ± 0.4
Parietal Lobe13.93 ± 0.27
Pontine Tegmentum13.94 ± 0.29
Striatum13.91 ± 0.29
Subthalamus14.21 ± 0.08
Temporal Lobe13.98 ± 0.23
Thalamus13.98 ± 0.24
White Matter13.58 ± 0.09
Mouse Brain ISH
Peptide Top
Peptide Name Peptide Lengh Peptide Start Peptide End Peptide Sequence Source
PAp00002242 9 64 72 ESTLHLVLR Peptide Atlas

Simple Query:


  (e.g. CHD8)

Syndromic Genes

Non-syndromic Genes

AutismKB Statistics

  • Studies: 1,036
  • Genes: 1,379
  • CNVs/SVs: 5,420
  • SNVs/Indels: 11,669
  • de novo Mutations: 5,669
  • Mosaics: 789
  • Linkage Regions: 172
  • Paper Collected: 6/30/2018
  • Last Update: 8/26/2018


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