AutismKB 2.0

Annotation Detail for C9


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Basic Information Top
Gene Symbol:C9 ( - )
Gene Full Name: complement component 9
Band: 5p13.1
Quick LinksEntrez ID:735; OMIM: 120940; Uniprot ID:CO9_HUMAN; ENSEMBL ID: ENSG00000113600; HGNC ID: 1358
Relate to Another Database: SFARIGene; denovo-db
Unigene EST Top
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
embryoid body0 / 707610 
blastocyst0 / 623190 
fetus4 / 5640127
neonate0 / 310970 
infant0 / 236200 
juvenile0 / 555560 
adult28 / 193912114
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
adrenal tumor0 / 127940 
bladder carcinoma0 / 174750 
breast (mammary gland) tumor0 / 941780 
cervical tumor0 / 343660 
chondrosarcoma0 / 828230 
colorectal tumor0 / 1142460 
esophageal tumor0 / 172900 
gastrointestinal tumor0 / 1193690 
germ cell tumor0 / 2638450 
glioma0 / 1068830 
head and neck tumor0 / 1363020 
kidney tumor0 / 689590 
leukemia0 / 958420 
liver tumor23 / 96359238
lung tumor0 / 1031270 
lymphoma0 / 717550 
non-neoplasia0 / 972500 
normal77 / 336030722
ovarian tumor0 / 766820 
pancreatic tumor1 / 1046169
primitive neuroectodermal tumor of the CNS0 / 1256800 
prostate cancer0 / 1026800 
retinoblastoma0 / 463560 
skin tumor0 / 1249490 
soft tissue/muscle tissue tumor0 / 1251910 
uterine tumor0 / 902570 
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
adipose tissue0 / 131060 
adrenal gland0 / 331970 
ascites0 / 400150 
bladder0 / 297570 
blood0 / 1234780 
bone0 / 716550 
bone marrow0 / 488010 
brain0 / 11009890 
cervix0 / 481710 
connective tissue0 / 1492550 
ear0 / 162120 
embryonic tissue0 / 2157220 
esophagus0 / 202090 
eye0 / 2110540 
heart0 / 896260 
intestine0 / 2344720 
kidney2 / 2117779
larynx0 / 241450 
liver95 / 207743457
lung0 / 3369740 
lymph0 / 442700 
lymph node0 / 916100 
mammary gland0 / 1532710 
mouth0 / 670520 
muscle1 / 1077159
nerve0 / 157680 
ovary0 / 1020510 
pancreas1 / 2148124
parathyroid0 / 205390 
pharynx0 / 413280 
pituitary gland0 / 165850 
placenta2 / 2808257
prostate0 / 1893450 
salivary gland0 / 201550 
skin0 / 2105740 
spleen0 / 539520 
stomach0 / 966190 
testis0 / 3304420 
thymus0 / 811310 
thyroid0 / 474730 
tonsil0 / 169990 
trachea0 / 524130 
umbilical cord0 / 136800 
uterus0 / 2328780 
vascular0 / 517800 
Microarray in BioGPS Top
Select probe  
  • Microarray Platform: GeneAtlas U133A, gcrma
  • Affymatrix Probe ID: 206727_at
Cell line Expression level Expression bar
721_B_lymphoblasts6.7
Adipocyte5.75
AdrenalCortex6.85
Adrenalgland5.15
Amygdala5.9
Appendix6.6
AtrioventricularNode5.2
BDCA4+_DentriticCells5.85
Bonemarrow6.2
BronchialEpithelialCells5.6
CD105+_Endothelial5.75
CD14+_Monocytes6.2
CD19+_BCells(neg._sel.)6.05
CD33+_Myeloid7.45
CD34+7.2
CD4+_Tcells6
CD56+_NKCells6.55
CD71+_EarlyErythroid5.6
CD8+_Tcells5.3
CardiacMyocytes8.8
Caudatenucleus5.25
Cerebellum4.8
CerebellumPeduncles6.95
CiliaryGanglion4.8
CingulateCortex6.1
Colorectaladenocarcinoma5.85
DorsalRootGanglion5.65
FetalThyroid5.85
Fetalbrain5.6
Fetalliver5.2
Fetallung4.55
GlobusPallidus4.55
Heart8.6
Hypothalamus6.1
Kidney5.1
Leukemia_chronicMyelogenousK-5625.25
Leukemia_promyelocytic-HL-605.2
Leukemialymphoblastic(MOLT-4)4.5
Liver55.4
Lung6.35
Lymphnode4.8
Lymphoma_burkitts(Daudi)7.65
Lymphoma_burkitts(Raji)8.8
MedullaOblongata5.25
OccipitalLobe5.15
OlfactoryBulb4.55
Ovary4.15
Pancreas4.85
PancreaticIslet6.35
ParietalLobe6.45
Pituitary6.8
Placenta5.85
Pons6.25
PrefrontalCortex7
Prostate6.7
Salivarygland4.85
SkeletalMuscle7.8
Skin5.3
SmoothMuscle6.55
Spinalcord6.2
SubthalamicNucleus5.5
SuperiorCervicalGanglion7.8
TemporalLobe5.5
Testis5
TestisGermCell4.7
TestisIntersitial5
TestisLeydigCell6
TestisSeminiferousTubule4.95
Thalamus6.05
Thymus4.4
Thyroid7.1
Tongue6.2
Tonsil5.8
Trachea4.85
TrigeminalGanglion7.95
Uterus4.65
UterusCorpus5.7
WholeBlood6.35
Wholebrain4.7
colon5.9
pineal_day7.14
pineal_night7.04
retina7.05
small_intestine5.6
Allen Brain Atlas Top
Human Whole Brain Microarrayview in Allen Brain Atlas
  • Probe id     Donor id      
  • Probe name: CUST_15185_PI416261804
  • Donor H0351.2001
  • Sex: Male     Age: 24 years     Race/Ethnicity: African American     Handedness: Left
  • Tissue Receipt Date: 7/29/2009     Serology: Pass      Tissue pH :6.72     Additional Medical Information :History of asthma
  • Postmortem Interval: 23 hours (estimated time of death to time that tissue is frozen)
  • Toxicology: Positive for atropine and caffeine, at levels usually not toxicologically significant
Tissue Expression(mean ± stddev) Expression Bar
Amygdala2.18 ± 1.06
Basal Forebrain1.59 ± 0.2
Basal Part of Pons1.38 ± 0.44
Cerebellar Cortex1.46 ± 0.73
Cerebellar Nuclei1.88 ± 0.76
Claustrum2.49 ± 0.89
Epithalamus1.39 ± 0.7
Frontal Lobe1.5 ± 0.62
Globus Pallidus2.38 ± 0.67
Hypothalamus1.68 ± 0.73
Insula1.64 ± 0.62
Limbic Lobe1.64 ± 0.61
Mesencephalon1.78 ± 0.65
Myelencephalon1.68 ± 0.68
Occipital Lobe1.64 ± 0.55
Parietal Lobe1.69 ± 0.81
Pontine Tegmentum1.7 ± 0.71
Striatum1.79 ± 0.53
Subthalamus1.71 ± 0.6
Temporal Lobe1.55 ± 0.64
Thalamus1.63 ± 0.62
White Matter2.03 ± 0.25
Mouse Brain ISH
Peptide Top
Peptide Name Peptide Lengh Peptide Start Peptide End Peptide Sequence Source
PAp00024052 17 251 267 AEQCCEETASSISLHGK Peptide Atlas

Simple Query:


  (e.g. CHD8)

Syndromic Genes

Non-syndromic Genes

AutismKB Statistics

  • Studies: 1,036
  • Genes: 1,379
  • CNVs/SVs: 5,420
  • SNVs/Indels: 11,669
  • de novo Mutations: 5,669
  • Mosaics: 789
  • Linkage Regions: 172
  • Paper Collected: 6/30/2018
  • Last Update: 8/26/2018