AutismKB 2.0

Annotation Detail for UGCG


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Basic Information Top
Gene Symbol:UGCG ( GCS,GLCT1 )
Gene Full Name: UDP-glucose ceramide glucosyltransferase
Band: 9q31.3
Quick LinksEntrez ID:7357; OMIM: 602874; Uniprot ID:CEGT_HUMAN; ENSEMBL ID: ENSG00000148154; HGNC ID: 12524
Relate to Another Database: SFARIGene; denovo-db
Unigene EST Top
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
embryoid body2 / 7076128
blastocyst0 / 623190 
fetus28 / 56401249
neonate0 / 310970 
infant0 / 236200 
juvenile0 / 555560 
adult49 / 193912125
embryoid body1 / 7076114
blastocyst0 / 623190 
fetus26 / 56401246
neonate0 / 310970 
infant0 / 236200 
juvenile2 / 5555635
adult75 / 193912138
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
adrenal tumor0 / 127940 
bladder carcinoma0 / 174750 
breast (mammary gland) tumor4 / 9417842
cervical tumor0 / 343660 
chondrosarcoma6 / 8282372
colorectal tumor0 / 1142460 
esophageal tumor0 / 172900 
gastrointestinal tumor2 / 11936916
germ cell tumor3 / 26384511
glioma1 / 1068839
head and neck tumor0 / 1363020 
kidney tumor1 / 6895914
leukemia14 / 95842146
liver tumor3 / 9635931
lung tumor1 / 1031279
lymphoma1 / 7175513
non-neoplasia0 / 972500 
normal102 / 336030730
ovarian tumor10 / 76682130
pancreatic tumor3 / 10461628
primitive neuroectodermal tumor of the CNS0 / 1256800 
prostate cancer0 / 1026800 
retinoblastoma0 / 463560 
skin tumor4 / 12494932
soft tissue/muscle tissue tumor0 / 1251910 
uterine tumor1 / 9025711
adrenal tumor2 / 12794156
bladder carcinoma0 / 174750 
breast (mammary gland) tumor9 / 9417895
cervical tumor0 / 343660 
chondrosarcoma8 / 8282396
colorectal tumor3 / 11424626
esophageal tumor1 / 1729057
gastrointestinal tumor5 / 11936941
germ cell tumor0 / 2638450 
glioma2 / 10688318
head and neck tumor0 / 1363020 
kidney tumor3 / 6895943
leukemia2 / 9584220
liver tumor8 / 9635983
lung tumor1 / 1031279
lymphoma3 / 7175541
non-neoplasia0 / 972500 
normal98 / 336030729
ovarian tumor2 / 7668226
pancreatic tumor1 / 1046169
primitive neuroectodermal tumor of the CNS0 / 1256800 
prostate cancer0 / 1026800 
retinoblastoma0 / 463560 
skin tumor6 / 12494948
soft tissue/muscle tissue tumor5 / 12519139
uterine tumor4 / 9025744
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
adipose tissue0 / 131060 
adrenal gland0 / 331970 
ascites1 / 4001524
bladder1 / 2975733
blood7 / 12347856
bone2 / 7165527
bone marrow0 / 488010 
brain5 / 11009894
cervix0 / 481710 
connective tissue4 / 14925526
ear0 / 162120 
embryonic tissue2 / 2157229
esophagus0 / 202090 
eye2 / 2110549
heart1 / 8962611
intestine1 / 2344724
kidney18 / 21177784
larynx0 / 241450 
liver8 / 20774338
lung18 / 33697453
lymph0 / 442700 
lymph node17 / 91610185
mammary gland8 / 15327152
mouth1 / 6705214
muscle2 / 10771518
nerve0 / 157680 
ovary10 / 10205197
pancreas8 / 21481237
parathyroid0 / 205390 
pharynx0 / 413280 
pituitary gland0 / 165850 
placenta2 / 2808257
prostate2 / 18934510
salivary gland0 / 201550 
skin16 / 21057475
spleen0 / 539520 
stomach1 / 9661910
testis4 / 33044212
thymus1 / 8113112
thyroid0 / 474730 
tonsil0 / 169990 
trachea3 / 5241357
umbilical cord0 / 136800 
uterus1 / 2328784
vascular1 / 5178019
adipose tissue0 / 131060 
adrenal gland6 / 33197180
ascites0 / 400150 
bladder1 / 2975733
blood2 / 12347816
bone7 / 7165597
bone marrow0 / 488010 
brain12 / 110098910
cervix0 / 481710 
connective tissue8 / 14925553
ear0 / 162120 
embryonic tissue5 / 21572223
esophagus1 / 2020949
eye3 / 21105414
heart3 / 8962633
intestine4 / 23447217
kidney6 / 21177728
larynx0 / 241450 
liver9 / 20774343
lung16 / 33697447
lymph0 / 442700 
lymph node10 / 91610109
mammary gland18 / 153271117
mouth0 / 670520 
muscle1 / 1077159
nerve2 / 15768126
ovary2 / 10205119
pancreas8 / 21481237
parathyroid0 / 205390 
pharynx0 / 413280 
pituitary gland0 / 165850 
placenta2 / 2808257
prostate3 / 18934515
salivary gland0 / 201550 
skin9 / 21057442
spleen0 / 539520 
stomach5 / 9661951
testis0 / 3304420 
thymus1 / 8113112
thyroid0 / 474730 
tonsil0 / 169990 
trachea0 / 524130 
umbilical cord0 / 136800 
uterus9 / 23287838
vascular2 / 5178038
Microarray in BioGPS Top
Select probe  
  • Microarray Platform: GeneAtlas U133A, gcrma
  • Affymatrix Probe ID: 204881_s_at
Cell line Expression level Expression bar
721_B_lymphoblasts156.25
Adipocyte11.9
AdrenalCortex348.95
Adrenalgland271.9
Amygdala32
Appendix33.65
AtrioventricularNode13.25
BDCA4+_DentriticCells4713.35
Bonemarrow257.45
BronchialEpithelialCells143.25
CD105+_Endothelial135.45
CD14+_Monocytes62.55
CD19+_BCells(neg._sel.)718.55
CD33+_Myeloid39.4
CD34+194.45
CD4+_Tcells116.5
CD56+_NKCells57.2
CD71+_EarlyErythroid154.45
CD8+_Tcells41.9
CardiacMyocytes60.3
Caudatenucleus20.2
Cerebellum19.3
CerebellumPeduncles36.45
CiliaryGanglion31.85
CingulateCortex14.8
Colorectaladenocarcinoma287.3
DorsalRootGanglion21.7
FetalThyroid24.25
Fetalbrain43.2
Fetalliver44.8
Fetallung132.55
GlobusPallidus27.7
Heart10.95
Hypothalamus15.15
Kidney28.75
Leukemia_chronicMyelogenousK-56240
Leukemia_promyelocytic-HL-6021.5
Leukemialymphoblastic(MOLT-4)10.05
Liver18
Lung94.6
Lymphnode122.3
Lymphoma_burkitts(Daudi)46.85
Lymphoma_burkitts(Raji)13.85
MedullaOblongata33.65
OccipitalLobe36.65
OlfactoryBulb21.85
Ovary13.9
Pancreas25.85
PancreaticIslet70.85
ParietalLobe24.85
Pituitary74.75
Placenta54.7
Pons35.1
PrefrontalCortex54.75
Prostate83.1
Salivarygland8.6
SkeletalMuscle13
Skin16.75
SmoothMuscle312.85
Spinalcord8.15
SubthalamicNucleus30.8
SuperiorCervicalGanglion9.4
TemporalLobe43.65
Testis19.6
TestisGermCell15.7
TestisIntersitial10.35
TestisLeydigCell10.5
TestisSeminiferousTubule12.15
Thalamus18.45
Thymus123.65
Thyroid16.65
Tongue53.3
Tonsil137.2
Trachea80.55
TrigeminalGanglion17.1
Uterus89.9
UterusCorpus69.8
WholeBlood38
Wholebrain46
colon69.5
pineal_day61.7
pineal_night60.16
retina36.95
small_intestine90.95
Allen Brain Atlas Top
Human Whole Brain Microarrayview in Allen Brain Atlas
  • Probe id     Donor id      
  • Probe name: CUST_12203_PI416261804
  • Donor H0351.2001
  • Sex: Male     Age: 24 years     Race/Ethnicity: African American     Handedness: Left
  • Tissue Receipt Date: 7/29/2009     Serology: Pass      Tissue pH :6.72     Additional Medical Information :History of asthma
  • Postmortem Interval: 23 hours (estimated time of death to time that tissue is frozen)
  • Toxicology: Positive for atropine and caffeine, at levels usually not toxicologically significant
Tissue Expression(mean ± stddev) Expression Bar
Amygdala6.4 ± 0.43
Basal Forebrain6.4 ± 0.72
Basal Part of Pons6.65 ± 0.33
Cerebellar Cortex6.8 ± 0.26
Cerebellar Nuclei6.65 ± 0.31
Claustrum6.55 ± 0.75
Epithalamus6.48 ± 0.72
Frontal Lobe6.69 ± 0.41
Globus Pallidus5.53 ± 0.55
Hypothalamus6.65 ± 0.47
Insula6.62 ± 0.33
Limbic Lobe6.45 ± 0.47
Mesencephalon6.52 ± 0.67
Myelencephalon6.49 ± 0.55
Occipital Lobe6.22 ± 0.47
Parietal Lobe6.54 ± 0.46
Pontine Tegmentum6.5 ± 0.55
Striatum6.03 ± 0.5
Subthalamus6.64 ± 0.6
Temporal Lobe6.59 ± 0.44
Thalamus6.43 ± 0.44
White Matter4.94 ± 0.32
Mouse Brain ISH
Gene Symbol Brain Structure ID Brain Structure Name Express Desity/Level (Meatured by ISH) Express Bar
UgcgCBCerebellum21.13
31.32
UgcgCTXCerebral cortex27.85
22.81
UgcgHIPHippocampal region16.6
18.6
UgcgHPFHippocampal formation15.21
15.07
UgcgHYHypothalamus4.27
3.62
UgcgLSXLateral septal complex13.85
11.16
UgcgMBMidbrain11.77
11.63
UgcgMYMedulla19.9
25.66
UgcgOLFOlfactory bulb23.4
19.14
UgcgPPons14.35
18.01
UgcgPALPallidum6.75
7.06
UgcgRHPRetrohippocampal region13.15
10.59
UgcgsAMYStriatum-like amygdalar nuclei1.59
1.42
UgcgSTRStriatum5.12
4.5
UgcgSTRdStriatum dorsal region4.65
4.45
UgcgSTRvStriatum ventral region5.09
3.73
UgcgTHThalamus14.08
13.31
Peptide Top

Simple Query:


  (e.g. CHD8)

Syndromic Genes

Non-syndromic Genes

AutismKB Statistics

  • Studies: 1,036
  • Genes: 1,379
  • CNVs/SVs: 5,420
  • SNVs/Indels: 11,669
  • de novo Mutations: 5,669
  • Mosaics: 789
  • Linkage Regions: 172
  • Paper Collected: 6/30/2018
  • Last Update: 8/26/2018


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