AutismKB 2.0

Annotation Detail for USF2


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Basic Information Top
Gene Symbol:USF2 ( FIP,bHLHb12 )
Gene Full Name: upstream transcription factor 2, c-fos interacting
Band: 19q13
Quick LinksEntrez ID:7392; OMIM: 600390; Uniprot ID:USF2_HUMAN; ENSEMBL ID: ENSG00000105698; HGNC ID: 12594
Relate to Another Database: SFARIGene; denovo-db
Unigene EST Top
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
embryoid body1 / 7076114
blastocyst2 / 6231932
fetus26 / 56401246
neonate0 / 310970 
infant0 / 236200 
juvenile1 / 5555617
adult152 / 193912178
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
adrenal tumor1 / 1279478
bladder carcinoma1 / 1747557
breast (mammary gland) tumor2 / 9417821
cervical tumor4 / 34366116
chondrosarcoma3 / 8282336
colorectal tumor10 / 11424687
esophageal tumor1 / 1729057
gastrointestinal tumor11 / 11936992
germ cell tumor4 / 26384515
glioma16 / 106883149
head and neck tumor6 / 13630244
kidney tumor3 / 6895943
leukemia13 / 95842135
liver tumor3 / 9635931
lung tumor8 / 10312777
lymphoma6 / 7175583
non-neoplasia8 / 9725082
normal142 / 336030742
ovarian tumor6 / 7668278
pancreatic tumor11 / 104616105
primitive neuroectodermal tumor of the CNS15 / 125680119
prostate cancer17 / 102680165
retinoblastoma2 / 4635643
skin tumor8 / 12494964
soft tissue/muscle tissue tumor4 / 12519131
uterine tumor2 / 9025722
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
adipose tissue1 / 1310676
adrenal gland2 / 3319760
ascites4 / 4001599
bladder1 / 2975733
blood7 / 12347856
bone6 / 7165583
bone marrow0 / 488010 
brain53 / 110098948
cervix6 / 48171124
connective tissue4 / 14925526
ear0 / 162120 
embryonic tissue7 / 21572232
esophagus1 / 2020949
eye16 / 21105475
heart2 / 8962622
intestine17 / 23447272
kidney5 / 21177723
larynx4 / 24145165
liver5 / 20774324
lung19 / 33697456
lymph5 / 44270112
lymph node9 / 9161098
mammary gland2 / 15327113
mouth1 / 6705214
muscle9 / 10771583
nerve0 / 157680 
ovary10 / 10205197
pancreas17 / 21481279
parathyroid1 / 2053948
pharynx0 / 413280 
pituitary gland1 / 1658560
placenta8 / 28082528
prostate21 / 189345110
salivary gland4 / 20155198
skin11 / 21057452
spleen4 / 5395274
stomach13 / 96619134
testis0 / 3304420 
thymus0 / 811310 
thyroid0 / 474730 
tonsil0 / 169990 
trachea0 / 524130 
umbilical cord0 / 136800 
uterus9 / 23287838
vascular0 / 517800 
Microarray in BioGPS Top
Select probe  
  • Microarray Platform: GeneAtlas U133A, gcrma
  • Affymatrix Probe ID: 202152_x_at
Cell line Expression level Expression bar
721_B_lymphoblasts171.3
Adipocyte139.2
AdrenalCortex144.1
Adrenalgland179.8
Amygdala189.05
Appendix80.15
AtrioventricularNode105.4
BDCA4+_DentriticCells368.95
Bonemarrow111.9
BronchialEpithelialCells118
CD105+_Endothelial106.45
CD14+_Monocytes171.25
CD19+_BCells(neg._sel.)288.2
CD33+_Myeloid194.95
CD34+118.9
CD4+_Tcells180.45
CD56+_NKCells168.25
CD71+_EarlyErythroid145.3
CD8+_Tcells153.8
CardiacMyocytes90.4
Caudatenucleus232.8
Cerebellum174.9
CerebellumPeduncles260.35
CiliaryGanglion48
CingulateCortex257.85
Colorectaladenocarcinoma112.5
DorsalRootGanglion68.45
FetalThyroid129.85
Fetalbrain223.65
Fetalliver73.5
Fetallung109.4
GlobusPallidus144.15
Heart334.4
Hypothalamus153.5
Kidney118.95
Leukemia_chronicMyelogenousK-562142.15
Leukemia_promyelocytic-HL-60183.7
Leukemialymphoblastic(MOLT-4)154.8
Liver404.75
Lung253.85
Lymphnode194.5
Lymphoma_burkitts(Daudi)266.7
Lymphoma_burkitts(Raji)539.35
MedullaOblongata167.15
OccipitalLobe116.7
OlfactoryBulb219.15
Ovary91.35
Pancreas80.35
PancreaticIslet129.2
ParietalLobe181.3
Pituitary197.9
Placenta135.7
Pons149.25
PrefrontalCortex303.05
Prostate132.75
Salivarygland112.35
SkeletalMuscle158.6
Skin63.9
SmoothMuscle101.45
Spinalcord303.2
SubthalamicNucleus191.5
SuperiorCervicalGanglion103.75
TemporalLobe204
Testis99.55
TestisGermCell53.65
TestisIntersitial97.5
TestisLeydigCell135.55
TestisSeminiferousTubule121.75
Thalamus210.2
Thymus143.6
Thyroid320.85
Tongue116.7
Tonsil148.45
Trachea110
TrigeminalGanglion102.45
Uterus96.2
UterusCorpus89.75
WholeBlood262.9
Wholebrain226.8
colon33.7
pineal_day202.04
pineal_night176.92
retina134.175
small_intestine24.7
Allen Brain Atlas Top
Human Whole Brain Microarrayview in Allen Brain Atlas
  • Probe id     Donor id      
  • Probe name: A_23_P153783
  • Donor H0351.2001
  • Sex: Male     Age: 24 years     Race/Ethnicity: African American     Handedness: Left
  • Tissue Receipt Date: 7/29/2009     Serology: Pass      Tissue pH :6.72     Additional Medical Information :History of asthma
  • Postmortem Interval: 23 hours (estimated time of death to time that tissue is frozen)
  • Toxicology: Positive for atropine and caffeine, at levels usually not toxicologically significant
Tissue Expression(mean ± stddev) Expression Bar
Amygdala7.73 ± 0.4
Basal Forebrain7.64 ± 0.35
Basal Part of Pons7.39 ± 0.28
Cerebellar Cortex7.28 ± 0.15
Cerebellar Nuclei7.55 ± 0.23
Claustrum7.98 ± 0.51
Epithalamus7.41 ± 0.17
Frontal Lobe7.38 ± 0.35
Globus Pallidus8.36 ± 0.17
Hypothalamus7.05 ± 0.3
Insula7.28 ± 0.41
Limbic Lobe7.72 ± 0.48
Mesencephalon7.64 ± 0.41
Myelencephalon7.61 ± 0.42
Occipital Lobe8.05 ± 0.51
Parietal Lobe7.62 ± 0.38
Pontine Tegmentum7.49 ± 0.46
Striatum8.13 ± 0.48
Subthalamus7.32 ± 0.34
Temporal Lobe7.46 ± 0.35
Thalamus7.56 ± 0.33
White Matter8.18 ± 0.4
Mouse Brain ISH
Peptide Top

Simple Query:


  (e.g. CHD8)

Syndromic Genes

Non-syndromic Genes

AutismKB Statistics

  • Studies: 1,036
  • Genes: 1,379
  • CNVs/SVs: 5,420
  • SNVs/Indels: 11,669
  • de novo Mutations: 5,669
  • Mosaics: 789
  • Linkage Regions: 172
  • Paper Collected: 6/30/2018
  • Last Update: 8/26/2018


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