AutismKB 2.0

Annotation Detail for VGF


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Basic Information Top
Gene Symbol:VGF ( - )
Gene Full Name: VGF nerve growth factor inducible
Band: 7q22.1
Quick LinksEntrez ID:7425; OMIM: 602186; Uniprot ID:VGF_HUMAN; ENSEMBL ID: ENSG00000128564; HGNC ID: 12684
Relate to Another Database: SFARIGene; denovo-db
Unigene EST Top
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
embryoid body1 / 7076114
blastocyst0 / 623190 
fetus1 / 5640121
neonate0 / 310970 
infant0 / 236200 
juvenile0 / 555560 
adult34 / 193912117
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
adrenal tumor1 / 1279478
bladder carcinoma0 / 174750 
breast (mammary gland) tumor0 / 941780 
cervical tumor0 / 343660 
chondrosarcoma0 / 828230 
colorectal tumor0 / 1142460 
esophageal tumor0 / 172900 
gastrointestinal tumor3 / 11936925
germ cell tumor8 / 26384530
glioma5 / 10688346
head and neck tumor0 / 1363020 
kidney tumor1 / 6895914
leukemia0 / 958420 
liver tumor0 / 963590 
lung tumor6 / 10312758
lymphoma0 / 717550 
non-neoplasia0 / 972500 
normal52 / 336030715
ovarian tumor1 / 7668213
pancreatic tumor5 / 10461647
primitive neuroectodermal tumor of the CNS10 / 12568079
prostate cancer0 / 1026800 
retinoblastoma0 / 463560 
skin tumor20 / 124949160
soft tissue/muscle tissue tumor0 / 1251910 
uterine tumor0 / 902570 
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
adipose tissue0 / 131060 
adrenal gland1 / 3319730
ascites1 / 4001524
bladder0 / 297570 
blood0 / 1234780 
bone0 / 716550 
bone marrow0 / 488010 
brain17 / 110098915
cervix0 / 481710 
connective tissue0 / 1492550 
ear0 / 162120 
embryonic tissue2 / 2157229
esophagus0 / 202090 
eye4 / 21105418
heart0 / 896260 
intestine2 / 2344728
kidney1 / 2117774
larynx0 / 241450 
liver0 / 2077430 
lung7 / 33697420
lymph0 / 442700 
lymph node0 / 916100 
mammary gland0 / 1532710 
mouth0 / 670520 
muscle0 / 1077150 
nerve0 / 157680 
ovary2 / 10205119
pancreas38 / 214812176
parathyroid0 / 205390 
pharynx0 / 413280 
pituitary gland1 / 1658560
placenta1 / 2808253
prostate0 / 1893450 
salivary gland0 / 201550 
skin20 / 21057494
spleen0 / 539520 
stomach1 / 9661910
testis1 / 3304423
thymus0 / 811310 
thyroid0 / 474730 
tonsil0 / 169990 
trachea0 / 524130 
umbilical cord0 / 136800 
uterus0 / 2328780 
vascular0 / 517800 
Microarray in BioGPS Top
Select probe  
  • Microarray Platform: GeneAtlas U133A, gcrma
  • Affymatrix Probe ID: 205586_x_at
Cell line Expression level Expression bar
721_B_lymphoblasts17.7
Adipocyte15.2
AdrenalCortex16
Adrenalgland13.05
Amygdala31.5
Appendix16.2
AtrioventricularNode12.85
BDCA4+_DentriticCells15.4
Bonemarrow16.85
BronchialEpithelialCells14.25
CD105+_Endothelial19.3
CD14+_Monocytes16.55
CD19+_BCells(neg._sel.)16.55
CD33+_Myeloid20.55
CD34+19.7
CD4+_Tcells18.25
CD56+_NKCells15.4
CD71+_EarlyErythroid18
CD8+_Tcells15.2
CardiacMyocytes38.2
Caudatenucleus15.45
Cerebellum12.4
CerebellumPeduncles17.4
CiliaryGanglion17.55
CingulateCortex15.85
Colorectaladenocarcinoma32.25
DorsalRootGanglion12.25
FetalThyroid15
Fetalbrain14.9
Fetalliver13.5
Fetallung11.55
GlobusPallidus18.05
Heart34.15
Hypothalamus19.7
Kidney12.8
Leukemia_chronicMyelogenousK-56213.7
Leukemia_promyelocytic-HL-6012.55
Leukemialymphoblastic(MOLT-4)9.5
Liver20.5
Lung15.4
Lymphnode13.2
Lymphoma_burkitts(Daudi)19.8
Lymphoma_burkitts(Raji)28.1
MedullaOblongata14.25
OccipitalLobe15.2
OlfactoryBulb11.45
Ovary10.1
Pancreas12.5
PancreaticIslet332.4
ParietalLobe17.3
Pituitary19.25
Placenta13.95
Pons19.45
PrefrontalCortex21.2
Prostate18.1
Salivarygland12.35
SkeletalMuscle19.25
Skin13.35
SmoothMuscle17.45
Spinalcord16.85
SubthalamicNucleus14.4
SuperiorCervicalGanglion20.1
TemporalLobe14.8
Testis13.55
TestisGermCell11.85
TestisIntersitial12.05
TestisLeydigCell14.6
TestisSeminiferousTubule12.15
Thalamus20.9
Thymus11.6
Thyroid20.05
Tongue17.55
Tonsil14.6
Trachea11.8
TrigeminalGanglion16.2
Uterus11.45
UterusCorpus13.75
WholeBlood14.05
Wholebrain21.9
colon15.7
pineal_day28.4
pineal_night21.06
retina19
small_intestine16.7
Allen Brain Atlas Top
Human Whole Brain Microarrayview in Allen Brain Atlas
  • Probe id     Donor id      
  • Probe name: CUST_6379_PI416261804
  • Donor H0351.2001
  • Sex: Male     Age: 24 years     Race/Ethnicity: African American     Handedness: Left
  • Tissue Receipt Date: 7/29/2009     Serology: Pass      Tissue pH :6.72     Additional Medical Information :History of asthma
  • Postmortem Interval: 23 hours (estimated time of death to time that tissue is frozen)
  • Toxicology: Positive for atropine and caffeine, at levels usually not toxicologically significant
Tissue Expression(mean ± stddev) Expression Bar
Amygdala14.14 ± 0.58
Basal Forebrain13.93 ± 0.24
Basal Part of Pons14.35 ± 0.23
Cerebellar Cortex13.66 ± 0.23
Cerebellar Nuclei14.34 ± 0.24
Claustrum14.15 ± 0.46
Epithalamus13.48 ± 0.3
Frontal Lobe14.13 ± 0.45
Globus Pallidus14.37 ± 0.16
Hypothalamus13.9 ± 0.49
Insula14.01 ± 0.48
Limbic Lobe14.08 ± 0.42
Mesencephalon14.07 ± 0.37
Myelencephalon14.06 ± 0.47
Occipital Lobe13.98 ± 0.38
Parietal Lobe14 ± 0.36
Pontine Tegmentum13.93 ± 0.36
Striatum14.39 ± 0.39
Subthalamus14 ± 0.24
Temporal Lobe14 ± 0.43
Thalamus14.17 ± 0.3
White Matter14.01 ± 0.41
Mouse Brain ISH
Gene Symbol Brain Structure ID Brain Structure Name Express Desity/Level (Meatured by ISH) Express Bar
VgfCBCerebellum50.29
94.73
VgfCTXCerebral cortex100
100
VgfHIPHippocampal region91.84
100
VgfHPFHippocampal formation100
100
VgfHYHypothalamus97.66
100
VgfLSXLateral septal complex100
100
VgfMBMidbrain98.61
100
VgfMYMedulla86.01
100
VgfOLFOlfactory bulb100
100
VgfPPons91.54
100
VgfPALPallidum92.96
100
VgfRHPRetrohippocampal region100
100
VgfsAMYStriatum-like amygdalar nuclei100
100
VgfSTRStriatum100
100
VgfSTRdStriatum dorsal region100
100
VgfSTRvStriatum ventral region100
100
VgfTHThalamus100
100
Peptide Top
Peptide Name Peptide Lengh Peptide Start Peptide End Peptide Sequence Source
PAp00136172 11 268 278 AYQGVAAPFPK Peptide Atlas
VGF_HUMAN_177 12 177 188 QQETAAAETETR PRIDE
VGF_HUMAN_64 17 64 80 NSEPQDEGELFQGVDPR PRIDE

Simple Query:


  (e.g. CHD8)

Syndromic Genes

Non-syndromic Genes

AutismKB Statistics

  • Studies: 1,036
  • Genes: 1,379
  • CNVs/SVs: 5,420
  • SNVs/Indels: 11,669
  • de novo Mutations: 5,669
  • Mosaics: 789
  • Linkage Regions: 172
  • Paper Collected: 6/30/2018
  • Last Update: 8/26/2018


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