AutismKB 2.0

Annotation Detail for VIL1


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Basic Information Top
Gene Symbol:VIL1 ( D2S1471,VIL )
Gene Full Name: villin 1
Band: 2q35
Quick LinksEntrez ID:7429; OMIM: 193040; Uniprot ID:VILI_HUMAN; ENSEMBL ID: ENSG00000127831; HGNC ID: 12690
Relate to Another Database: SFARIGene; denovo-db
Unigene EST Top
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
embryoid body0 / 707610 
blastocyst1 / 6231916
fetus9 / 56401215
neonate0 / 310970 
infant0 / 236200 
juvenile2 / 5555635
adult51 / 193912126
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
adrenal tumor0 / 127940 
bladder carcinoma0 / 174750 
breast (mammary gland) tumor0 / 941780 
cervical tumor0 / 343660 
chondrosarcoma0 / 828230 
colorectal tumor21 / 114246183
esophageal tumor0 / 172900 
gastrointestinal tumor12 / 119369100
germ cell tumor4 / 26384515
glioma0 / 1068830 
head and neck tumor0 / 1363020 
kidney tumor0 / 689590 
leukemia1 / 9584210
liver tumor24 / 96359249
lung tumor9 / 10312787
lymphoma0 / 717550 
non-neoplasia1 / 9725010
normal55 / 336030716
ovarian tumor0 / 766820 
pancreatic tumor1 / 1046169
primitive neuroectodermal tumor of the CNS0 / 1256800 
prostate cancer0 / 1026800 
retinoblastoma0 / 463560 
skin tumor0 / 1249490 
soft tissue/muscle tissue tumor0 / 1251910 
uterine tumor2 / 9025722
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
adipose tissue0 / 131060 
adrenal gland0 / 331970 
ascites5 / 40015124
bladder0 / 297570 
blood0 / 1234780 
bone0 / 716550 
bone marrow1 / 4880120
brain1 / 11009890 
cervix0 / 481710 
connective tissue0 / 1492550 
ear0 / 162120 
embryonic tissue1 / 2157224
esophagus0 / 202090 
eye0 / 2110540 
heart0 / 896260 
intestine60 / 234472255
kidney11 / 21177751
larynx0 / 241450 
liver29 / 207743139
lung9 / 33697426
lymph0 / 442700 
lymph node0 / 916100 
mammary gland0 / 1532710 
mouth0 / 670520 
muscle5 / 10771546
nerve0 / 157680 
ovary0 / 1020510 
pancreas3 / 21481213
parathyroid0 / 205390 
pharynx0 / 413280 
pituitary gland0 / 165850 
placenta0 / 2808250 
prostate0 / 1893450 
salivary gland0 / 201550 
skin0 / 2105740 
spleen0 / 539520 
stomach10 / 96619103
testis2 / 3304426
thymus0 / 811310 
thyroid0 / 474730 
tonsil0 / 169990 
trachea0 / 524130 
umbilical cord0 / 136800 
uterus2 / 2328788
vascular0 / 517800 
Microarray in BioGPS Top
Select probe  
  • Microarray Platform: GeneAtlas U133A, gcrma
  • Affymatrix Probe ID: 205506_at
Cell line Expression level Expression bar
721_B_lymphoblasts25.4
Adipocyte8.75
AdrenalCortex6.55
Adrenalgland4.55
Amygdala5.4
Appendix5.5
AtrioventricularNode10.95
BDCA4+_DentriticCells5.4
Bonemarrow5.4
BronchialEpithelialCells5
CD105+_Endothelial5.3
CD14+_Monocytes5.55
CD19+_BCells(neg._sel.)5.3
CD33+_Myeloid6.5
CD34+6.75
CD4+_Tcells5.65
CD56+_NKCells6.1
CD71+_EarlyErythroid4.75
CD8+_Tcells4.85
CardiacMyocytes8.5
Caudatenucleus4.7
Cerebellum5.45
CerebellumPeduncles6.45
CiliaryGanglion4.5
CingulateCortex5.6
Colorectaladenocarcinoma10.85
DorsalRootGanglion4.4
FetalThyroid5
Fetalbrain5.3
Fetalliver5.6
Fetallung4.1
GlobusPallidus4.35
Heart7.15
Hypothalamus5.7
Kidney13.4
Leukemia_chronicMyelogenousK-5624.9
Leukemia_promyelocytic-HL-604.6
Leukemialymphoblastic(MOLT-4)4.25
Liver7.25
Lung6.45
Lymphnode5
Lymphoma_burkitts(Daudi)7.05
Lymphoma_burkitts(Raji)7.55
MedullaOblongata4.95
OccipitalLobe4.6
OlfactoryBulb4.65
Ovary3.65
Pancreas19.35
PancreaticIslet5.75
ParietalLobe8.8
Pituitary6.8
Placenta5.6
Pons6.3
PrefrontalCortex6.7
Prostate6.15
Salivarygland4.35
SkeletalMuscle12.4
Skin9.5
SmoothMuscle5.85
Spinalcord5.6
SubthalamicNucleus6
SuperiorCervicalGanglion11.75
TemporalLobe4.9
Testis4.6
TestisGermCell4.3
TestisIntersitial4.45
TestisLeydigCell5.3
TestisSeminiferousTubule4.6
Thalamus5.3
Thymus4.2
Thyroid6.4
Tongue6.05
Tonsil5.1
Trachea4.5
TrigeminalGanglion5.8
Uterus4.25
UterusCorpus4.85
WholeBlood5.45
Wholebrain4.25
colon142.55
pineal_day6.5
pineal_night6.4
retina6.1
small_intestine276.4
Allen Brain Atlas Top
Human Whole Brain Microarrayview in Allen Brain Atlas
  • Probe id     Donor id      
  • Probe name: A_24_P68214
  • Donor H0351.2001
  • Sex: Male     Age: 24 years     Race/Ethnicity: African American     Handedness: Left
  • Tissue Receipt Date: 7/29/2009     Serology: Pass      Tissue pH :6.72     Additional Medical Information :History of asthma
  • Postmortem Interval: 23 hours (estimated time of death to time that tissue is frozen)
  • Toxicology: Positive for atropine and caffeine, at levels usually not toxicologically significant
Tissue Expression(mean ± stddev) Expression Bar
Amygdala2.86 ± 1.04
Basal Forebrain2.01 ± 0.21
Basal Part of Pons2.09 ± 0.84
Cerebellar Cortex2.38 ± 0.8
Cerebellar Nuclei2.56 ± 0.55
Claustrum2.97 ± 0.83
Epithalamus1.86 ± 0.74
Frontal Lobe2.17 ± 0.78
Globus Pallidus2.68 ± 0.78
Hypothalamus2.09 ± 0.67
Insula1.94 ± 0.47
Limbic Lobe2.37 ± 0.85
Mesencephalon2.3 ± 0.77
Myelencephalon2.34 ± 0.75
Occipital Lobe2.26 ± 0.78
Parietal Lobe2.31 ± 0.9
Pontine Tegmentum2.42 ± 0.67
Striatum2.14 ± 0.73
Subthalamus2.24 ± 0.74
Temporal Lobe2.23 ± 0.81
Thalamus2.24 ± 0.72
White Matter2.94 ± 0.46
Mouse Brain ISH
Gene Symbol Brain Structure ID Brain Structure Name Express Desity/Level (Meatured by ISH) Express Bar
Vil1CBCerebellum7.78
6.18
Vil1CTXCerebral cortex4.42
2.83
Vil1HIPHippocampal region4.69
2.86
Vil1HPFHippocampal formation5.21
3.23
Vil1HYHypothalamus3.4
1.98
Vil1LSXLateral septal complex1.39
1.2
Vil1MBMidbrain1.15
0.95
Vil1MYMedulla5.03
3.93
Vil1OLFOlfactory bulb7.98
5
Vil1PPons2.38
1.81
Vil1PALPallidum1.79
1.11
Vil1RHPRetrohippocampal region5.49
3.42
Vil1sAMYStriatum-like amygdalar nuclei9.16
6.23
Vil1STRStriatum3.35
2.1
Vil1STRdStriatum dorsal region1.2
0.85
Vil1STRvStriatum ventral region9.05
4.59
Vil1THThalamus1.62
0.89
Peptide Top
Peptide Name Peptide Lengh Peptide Start Peptide End Peptide Sequence Source
PAp00002263 26 269 294 EVATRPLTQDLLSHEDCYILDQGGLK Peptide Atlas

Simple Query:


  (e.g. CHD8)

Syndromic Genes

Non-syndromic Genes

AutismKB Statistics

  • Studies: 1,036
  • Genes: 1,379
  • CNVs/SVs: 5,420
  • SNVs/Indels: 11,669
  • de novo Mutations: 5,669
  • Mosaics: 789
  • Linkage Regions: 172
  • Paper Collected: 6/30/2018
  • Last Update: 8/26/2018


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