AutismKB 2.0

Annotation Detail for VIM


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Basic Information Top
Gene Symbol:VIM ( FLJ36605 )
Gene Full Name: vimentin
Band: 10p13
Quick LinksEntrez ID:7431; OMIM: 193060; Uniprot ID:VIME_HUMAN; ENSEMBL ID: ENSG00000026025; HGNC ID: 12692
Relate to Another Database: SFARIGene; denovo-db
Unigene EST Top
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
embryoid body84 / 707611187
blastocyst29 / 62319465
fetus558 / 564012989
neonate77 / 310972476
infant10 / 23620423
juvenile60 / 555561079
adult1650 / 1939121850
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
adrenal tumor15 / 127941172
bladder carcinoma4 / 17475228
breast (mammary gland) tumor118 / 941781252
cervical tumor40 / 343661163
chondrosarcoma254 / 828233066
colorectal tumor22 / 114246192
esophageal tumor9 / 17290520
gastrointestinal tumor58 / 119369485
germ cell tumor106 / 263845401
glioma100 / 106883935
head and neck tumor64 / 136302469
kidney tumor47 / 68959681
leukemia70 / 95842730
liver tumor170 / 963591764
lung tumor106 / 1031271027
lymphoma18 / 71755250
non-neoplasia124 / 972501275
normal2615 / 3360307778
ovarian tumor31 / 76682404
pancreatic tumor127 / 1046161213
primitive neuroectodermal tumor of the CNS81 / 125680644
prostate cancer10 / 10268097
retinoblastoma11 / 46356237
skin tumor223 / 1249491784
soft tissue/muscle tissue tumor192 / 1251911533
uterine tumor175 / 902571938
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
adipose tissue16 / 131061220
adrenal gland28 / 33197843
ascites1 / 4001524
bladder4 / 29757134
blood110 / 123478890
bone225 / 716553140
bone marrow37 / 48801758
brain654 / 1100989594
cervix50 / 481711037
connective tissue317 / 1492552123
ear70 / 162124317
embryonic tissue456 / 2157222113
esophagus10 / 20209494
eye246 / 2110541165
heart82 / 89626914
intestine93 / 234472396
kidney126 / 211777594
larynx3 / 24145124
liver208 / 2077431001
lung266 / 336974789
lymph3 / 4427067
lymph node20 / 91610218
mammary gland198 / 1532711291
mouth6 / 6705289
muscle33 / 107715306
nerve37 / 157682346
ovary59 / 102051578
pancreas146 / 214812679
parathyroid1 / 2053948
pharynx7 / 41328169
pituitary gland11 / 16585663
placenta199 / 280825708
prostate36 / 189345190
salivary gland8 / 20155396
skin326 / 2105741548
spleen32 / 53952593
stomach72 / 96619745
testis103 / 330442311
thymus32 / 81131394
thyroid98 / 474732064
tonsil1 / 1699958
trachea7 / 52413133
umbilical cord49 / 136803581
uterus376 / 2328781614
vascular90 / 517801738
Microarray in BioGPS Top
Select probe  
  • Microarray Platform: GeneAtlas U133A, gcrma
  • Affymatrix Probe ID: 201426_s_at
Cell line Expression level Expression bar
721_B_lymphoblasts4237.55
Adipocyte12655.9
AdrenalCortex495.8
Adrenalgland731.85
Amygdala937.8
Appendix3158.9
AtrioventricularNode5217.05
BDCA4+_DentriticCells4772.7
Bonemarrow1705.6
BronchialEpithelialCells2044.55
CD105+_Endothelial441.75
CD14+_Monocytes6355.8
CD19+_BCells(neg._sel.)2112.7
CD33+_Myeloid10099.7
CD34+2160.2
CD4+_Tcells3693.3
CD56+_NKCells2009.5
CD71+_EarlyErythroid68.85
CD8+_Tcells2720.65
CardiacMyocytes14763.2
Caudatenucleus578.05
Cerebellum88.9
CerebellumPeduncles179.95
CiliaryGanglion4924.05
CingulateCortex91.6
Colorectaladenocarcinoma1633.35
DorsalRootGanglion7795.1
FetalThyroid5419.6
Fetalbrain824.2
Fetalliver343.65
Fetallung3401.9
GlobusPallidus220.25
Heart1857.35
Hypothalamus626.9
Kidney456.9
Leukemia_chronicMyelogenousK-5621638
Leukemia_promyelocytic-HL-6053.9
Leukemialymphoblastic(MOLT-4)1863.2
Liver367.4
Lung6411.45
Lymphnode3095.4
Lymphoma_burkitts(Daudi)37.6
Lymphoma_burkitts(Raji)97.65
MedullaOblongata157.3
OccipitalLobe679.25
OlfactoryBulb6968.7
Ovary5224.75
Pancreas545.55
PancreaticIslet738.5
ParietalLobe296.2
Pituitary2545.4
Placenta5186.7
Pons485.85
PrefrontalCortex1131.25
Prostate1823.9
Salivarygland1584.95
SkeletalMuscle277.8
Skin1866.15
SmoothMuscle11937.75
Spinalcord2444.7
SubthalamicNucleus235.55
SuperiorCervicalGanglion4906.25
TemporalLobe230.05
Testis1297.5
TestisGermCell2657.15
TestisIntersitial1567.8
TestisLeydigCell1208.65
TestisSeminiferousTubule1008.75
Thalamus240.35
Thymus2228.2
Thyroid10385.05
Tongue2090.95
Tonsil2005.5
Trachea2473.4
TrigeminalGanglion7733.3
Uterus5469.4
UterusCorpus5183.8
WholeBlood5003.7
Wholebrain558.65
colon1332.45
pineal_day1426.02
pineal_night1702.98
retina7954.625
small_intestine1421.25
Allen Brain Atlas Top
Human Whole Brain Microarrayview in Allen Brain Atlas
  • Probe id     Donor id      
  • Probe name: A_23_P161194
  • Donor H0351.2001
  • Sex: Male     Age: 24 years     Race/Ethnicity: African American     Handedness: Left
  • Tissue Receipt Date: 7/29/2009     Serology: Pass      Tissue pH :6.72     Additional Medical Information :History of asthma
  • Postmortem Interval: 23 hours (estimated time of death to time that tissue is frozen)
  • Toxicology: Positive for atropine and caffeine, at levels usually not toxicologically significant
Tissue Expression(mean ± stddev) Expression Bar
Amygdala10.33 ± 0.65
Basal Forebrain10 ± 0.4
Basal Part of Pons9.34 ± 0.51
Cerebellar Cortex9.05 ± 0.36
Cerebellar Nuclei9.84 ± 0.25
Claustrum9.73 ± 0.59
Epithalamus11.08 ± 0.59
Frontal Lobe9.63 ± 0.59
Globus Pallidus10.24 ± 0.26
Hypothalamus9.5 ± 0.96
Insula9.87 ± 0.28
Limbic Lobe9.63 ± 0.56
Mesencephalon9.7 ± 0.58
Myelencephalon9.81 ± 0.63
Occipital Lobe9.42 ± 0.54
Parietal Lobe9.5 ± 0.55
Pontine Tegmentum9.68 ± 0.61
Striatum11.05 ± 0.48
Subthalamus9.47 ± 0.26
Temporal Lobe9.77 ± 0.47
Thalamus9.28 ± 0.33
White Matter9.77 ± 0.3
Mouse Brain ISH
Peptide Top
Peptide Name Peptide Lengh Peptide Start Peptide End Peptide Sequence Source
PAp00006481 13 322 334 QVQSLTCEVDALK Peptide Atlas
VIME_HUMAN_0 0 0 0 EEAENTLQSFR PRIDE
VIME_HUMAN_0 0 0 0 EYQDLLNVK PRIDE
VIME_HUMAN_0 0 0 0 FADLSEAANR PRIDE
VIME_HUMAN_0 0 0 0 ILLAELEQLKGQGK PRIDE
VIME_HUMAN_0 0 0 0 ISLPLPNFSSLNLR PRIDE
VIME_HUMAN_0 0 0 0 KVESLQEEIAFLK PRIDE
VIME_HUMAN_0 0 0 0 SLYASSPGGVYATR PRIDE
VIME_HUMAN_0 0 0 0 TNEKVELQELNDR PRIDE
VIME_HUMAN_0 0 0 0 TYSLGSALRPSTSR PRIDE
VIME_HUMAN_100 13 100 112 TNEKVELQELNDR PRIDE
VIME_HUMAN_104 9 104 112 VELQELNDR PRIDE
VIME_HUMAN_113 9 113 121 FANYIDKVR PRIDE
VIME_HUMAN_12 16 12 27 RMFGGPGTASRPSSSR PRIDE
VIME_HUMAN_122 23 122 144 FLEQQNKILLAELEQLKGQGKSR PRIDE
VIME_HUMAN_129 10 129 138 ILLAELEQLK PRIDE
VIME_HUMAN_129 14 129 142 ILLAELEQLKGQGK PRIDE
VIME_HUMAN_13 15 13 27 MFGGPGTASRPSSSR PRIDE
VIME_HUMAN_130 10 130 139 ILLAELEQLK PRIDE
VIME_HUMAN_14 10 14 23 MFGGPGTASR PRIDE
VIME_HUMAN_14 9 14 22 FGGPGTASR PRIDE
VIME_HUMAN_143 12 143 154 SRLGDLYEEEMR PRIDE
VIME_HUMAN_145 10 145 154 LGDLYEEEMR PRIDE
VIME_HUMAN_145 13 145 157 LGDLYEEEMRELR PRIDE
VIME_HUMAN_146 10 146 155 LGDLYEEEMR PRIDE
VIME_HUMAN_158 10 158 167 RQVDQLTNDK PRIDE
VIME_HUMAN_159 11 159 169 QVDQLTNDKAR PRIDE
VIME_HUMAN_159 9 159 167 QVDQLTNDK PRIDE
VIME_HUMAN_168 16 168 183 ARVEVERDNLAEDIMR PRIDE
VIME_HUMAN_170 14 170 183 VEVERDNLAEDIMR PRIDE
VIME_HUMAN_175 9 175 183 DNLAEDIMR PRIDE
VIME_HUMAN_186 10 186 195 EKLQEEMLQR PRIDE
VIME_HUMAN_188 29 188 216 LQEEMLQREEAENTLQSFRQDVDNASLAR PRIDE
VIME_HUMAN_188 8 188 195 LQEEMLQR PRIDE
VIME_HUMAN_196 11 196 206 EEAENTLQSFR PRIDE
VIME_HUMAN_197 11 197 207 EEAENTLQSFR PRIDE
VIME_HUMAN_207 10 207 216 QDVDNASLAR PRIDE
VIME_HUMAN_222 13 222 234 KVESLQEEIAFLK PRIDE
VIME_HUMAN_222 14 222 235 KVESLQEEIAFLKK PRIDE
VIME_HUMAN_223 13 223 235 KVESLQEEIAFLK PRIDE
VIME_HUMAN_235 35 235 269 KLHEEEIQELQAQIQEQHVQIDVDVSKPDLTAALR PRIDE
VIME_HUMAN_236 34 236 269 LHEEEIQELQAQIQEQHVQIDVDVSKPDLTAALR PRIDE
VIME_HUMAN_257 13 257 269 VDVSKPDLTAALR PRIDE
VIME_HUMAN_273 9 273 281 QQYESVAAK PRIDE
VIME_HUMAN_28 8 28 35 SYVTTSTR PRIDE
VIME_HUMAN_282 10 282 291 NLQEAEEWYK PRIDE
VIME_HUMAN_282 12 282 293 NLQEAEEWYKSK PRIDE
VIME_HUMAN_283 10 283 292 NLQEAEEWYK PRIDE
VIME_HUMAN_29 8 29 36 SYVTTSTR PRIDE
VIME_HUMAN_294 10 294 303 FADLSEAANR PRIDE
VIME_HUMAN_294 16 294 309 FADLSEAANRNNDALR PRIDE
VIME_HUMAN_295 10 295 304 FADLSEAANR PRIDE
VIME_HUMAN_295 9 295 303 ADLSEAANR PRIDE
VIME_HUMAN_310 10 310 319 QAKQESTEYR PRIDE
VIME_HUMAN_310 11 310 320 QAKQESTEYRR PRIDE
VIME_HUMAN_321 10 321 330 QVQSLTCEVD PRIDE
VIME_HUMAN_321 13 321 333 QVQSLTCEVDALK PRIDE
VIME_HUMAN_321 21 321 341 QVQSLTCEVDALKGTNESLER PRIDE
VIME_HUMAN_331 11 331 341 ALKGTNESLER PRIDE
VIME_HUMAN_334 8 334 341 GTNESLER PRIDE
VIME_HUMAN_345 19 345 363 EMEENFAVEAANYQDTIGR PRIDE
VIME_HUMAN_36 14 36 49 TYSLGSALRPSTSR PRIDE
VIME_HUMAN_364 14 364 377 LQDEIQNMKEEMAR PRIDE
VIME_HUMAN_364 9 364 372 LQDEIQNMK PRIDE
VIME_HUMAN_365 14 365 378 LQDEIQNMKEEMAR PRIDE
VIME_HUMAN_381 9 381 389 EYQDLLNVK PRIDE
VIME_HUMAN_382 9 382 390 EYQDLLNVK PRIDE
VIME_HUMAN_390 11 390 400 MALDIEIATYR PRIDE
VIME_HUMAN_390 12 390 401 MALDIEIATYRK PRIDE
VIME_HUMAN_4 8 4 11 SVSSSSYR PRIDE
VIME_HUMAN_401 9 401 409 KLLEGEESR PRIDE
VIME_HUMAN_402 8 402 409 LLEGEESR PRIDE
VIME_HUMAN_402 9 402 410 KLLEGEESR PRIDE
VIME_HUMAN_410 14 410 423 ISLPLPNFSSLNLR PRIDE
VIME_HUMAN_424 15 424 438 ETNLDSLPLVDTHSK PRIDE
VIME_HUMAN_424 16 424 439 ETNLDSLPLVDTHSKR PRIDE
VIME_HUMAN_440 10 440 449 TLLIKTVETR PRIDE
VIME_HUMAN_441 10 441 450 TLLIKTVETR PRIDE
VIME_HUMAN_441 9 441 449 LLIKTVETR PRIDE
VIME_HUMAN_445 21 445 465 TVETRDGQVINETSQHHDDLE PRIDE
VIME_HUMAN_450 16 450 465 DGQVINETSQHHDDLE PRIDE
VIME_HUMAN_50 14 50 63 SLYASSPGGVYATR PRIDE
VIME_HUMAN_51 14 51 64 SLYASSPGGVYATR PRIDE
VIME_HUMAN_78 19 78 96 LLQDSVDFSLADAINTEFK PRIDE
VIME_HUMAN_78 22 78 99 LLQDSVDFSLADAINTEFKNTR PRIDE
VIME_HUMAN_85 13 85 97 FSLADAINTEFKN PRIDE
VIME_HUMAN_85 15 85 99 FSLADAINTEFKNTR PRIDE
VIME_HUMAN_86 14 86 99 SLADAINTEFKNTR PRIDE
VIME_HUMAN_88 12 88 99 ADAINTEFKNTR PRIDE
VIME_HUMAN_90 10 90 99 AINTEFKNTR PRIDE

Simple Query:


  (e.g. CHD8)

Syndromic Genes

Non-syndromic Genes

AutismKB Statistics

  • Studies: 1,036
  • Genes: 1,379
  • CNVs/SVs: 5,420
  • SNVs/Indels: 11,669
  • de novo Mutations: 5,669
  • Mosaics: 789
  • Linkage Regions: 172
  • Paper Collected: 6/30/2018
  • Last Update: 8/26/2018


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