AutismKB 2.0

Annotation Detail for VLDLR


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Basic Information Top
Gene Symbol:VLDLR ( CARMQ1,CHRMQ1,FLJ35024,VLDLRCH )
Gene Full Name: very low density lipoprotein receptor
Band: 9p24.2
Quick LinksEntrez ID:7436; OMIM: 192977; Uniprot ID:VLDLR_HUMAN; ENSEMBL ID: ENSG00000147852; HGNC ID: 12698
Relate to Another Database: SFARIGene; denovo-db
Unigene EST Top
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
embryoid body5 / 7076170
blastocyst4 / 6231964
fetus39 / 56401269
neonate0 / 310970 
infant0 / 236200 
juvenile2 / 5555635
adult53 / 193912127
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
adrenal tumor0 / 127940 
bladder carcinoma0 / 174750 
breast (mammary gland) tumor0 / 941780 
cervical tumor0 / 343660 
chondrosarcoma2 / 8282324
colorectal tumor3 / 11424626
esophageal tumor0 / 172900 
gastrointestinal tumor1 / 1193698
germ cell tumor26 / 26384598
glioma2 / 10688318
head and neck tumor5 / 13630236
kidney tumor0 / 689590 
leukemia1 / 9584210
liver tumor1 / 9635910
lung tumor2 / 10312719
lymphoma1 / 7175513
non-neoplasia3 / 9725030
normal119 / 336030735
ovarian tumor3 / 7668239
pancreatic tumor0 / 1046160 
primitive neuroectodermal tumor of the CNS6 / 12568047
prostate cancer0 / 1026800 
retinoblastoma0 / 463560 
skin tumor5 / 12494940
soft tissue/muscle tissue tumor0 / 1251910 
uterine tumor4 / 9025744
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
adipose tissue2 / 13106152
adrenal gland0 / 331970 
ascites1 / 4001524
bladder0 / 297570 
blood1 / 1234788
bone3 / 7165541
bone marrow0 / 488010 
brain54 / 110098949
cervix0 / 481710 
connective tissue2 / 14925513
ear0 / 162120 
embryonic tissue11 / 21572250
esophagus0 / 202090 
eye6 / 21105428
heart7 / 8962678
intestine4 / 23447217
kidney4 / 21177718
larynx0 / 241450 
liver3 / 20774314
lung10 / 33697429
lymph1 / 4427022
lymph node0 / 916100 
mammary gland1 / 1532716
mouth2 / 6705229
muscle2 / 10771518
nerve0 / 157680 
ovary3 / 10205129
pancreas0 / 2148120 
parathyroid1 / 2053948
pharynx0 / 413280 
pituitary gland1 / 1658560
placenta9 / 28082532
prostate0 / 1893450 
salivary gland0 / 201550 
skin5 / 21057423
spleen3 / 5395255
stomach2 / 9661920
testis24 / 33044272
thymus1 / 8113112
thyroid3 / 4747363
tonsil0 / 169990 
trachea4 / 5241376
umbilical cord0 / 136800 
uterus11 / 23287847
vascular2 / 5178038
Microarray in BioGPS Top
Select probe  
  • Microarray Platform: GeneAtlas U133A, gcrma
  • Affymatrix Probe ID: 209822_s_at
Cell line Expression level Expression bar
721_B_lymphoblasts6.6
Adipocyte5.85
AdrenalCortex7.05
Adrenalgland5.6
Amygdala6.75
Appendix6.85
AtrioventricularNode4.8
BDCA4+_DentriticCells6.45
Bonemarrow5.8
BronchialEpithelialCells18.35
CD105+_Endothelial5.55
CD14+_Monocytes5.8
CD19+_BCells(neg._sel.)6.1
CD33+_Myeloid7.15
CD34+7.15
CD4+_Tcells5.65
CD56+_NKCells6.25
CD71+_EarlyErythroid5.2
CD8+_Tcells5.15
CardiacMyocytes14.4
Caudatenucleus8.15
Cerebellum4.85
CerebellumPeduncles7.65
CiliaryGanglion4.25
CingulateCortex6.35
Colorectaladenocarcinoma5.7
DorsalRootGanglion5
FetalThyroid6.05
Fetalbrain11.15
Fetalliver5
Fetallung5.1
GlobusPallidus5.2
Heart11
Hypothalamus7.15
Kidney5.3
Leukemia_chronicMyelogenousK-5625.1
Leukemia_promyelocytic-HL-605.1
Leukemialymphoblastic(MOLT-4)8.35
Liver7.7
Lung6.1
Lymphnode4.65
Lymphoma_burkitts(Daudi)7.45
Lymphoma_burkitts(Raji)8.1
MedullaOblongata6.05
OccipitalLobe5.5
OlfactoryBulb5.05
Ovary13.15
Pancreas4.8
PancreaticIslet31
ParietalLobe6.6
Pituitary6.8
Placenta6.3
Pons5.75
PrefrontalCortex7.6
Prostate6.7
Salivarygland4.75
SkeletalMuscle7.5
Skin4.8
SmoothMuscle13.4
Spinalcord7.15
SubthalamicNucleus5.4
SuperiorCervicalGanglion8.05
TemporalLobe5.45
Testis4.9
TestisGermCell5.6
TestisIntersitial5.05
TestisLeydigCell5.9
TestisSeminiferousTubule5.15
Thalamus6.05
Thymus4.3
Thyroid13.75
Tongue6.65
Tonsil5.9
Trachea4.85
TrigeminalGanglion6.9
Uterus13.15
UterusCorpus5.75
WholeBlood6.15
Wholebrain5.2
colon5.7
pineal_day6.76
pineal_night6.76
retina13.375
small_intestine5.4
Allen Brain Atlas Top
Human Whole Brain Microarrayview in Allen Brain Atlas
  • Probe id     Donor id      
  • Probe name: CUST_670_PI416408490
  • Donor H0351.2001
  • Sex: Male     Age: 24 years     Race/Ethnicity: African American     Handedness: Left
  • Tissue Receipt Date: 7/29/2009     Serology: Pass      Tissue pH :6.72     Additional Medical Information :History of asthma
  • Postmortem Interval: 23 hours (estimated time of death to time that tissue is frozen)
  • Toxicology: Positive for atropine and caffeine, at levels usually not toxicologically significant
Tissue Expression(mean ± stddev) Expression Bar
Amygdala4.4 ± 0.7
Basal Forebrain4.45 ± 0.47
Basal Part of Pons4.62 ± 0.69
Cerebellar Cortex4.76 ± 0.51
Cerebellar Nuclei4.79 ± 0.53
Claustrum4.33 ± 0.62
Epithalamus4.06 ± 0.88
Frontal Lobe4.58 ± 0.54
Globus Pallidus4.37 ± 0.69
Hypothalamus4.33 ± 0.63
Insula4.67 ± 0.43
Limbic Lobe4.43 ± 0.6
Mesencephalon4.53 ± 0.6
Myelencephalon4.5 ± 0.6
Occipital Lobe4.02 ± 0.64
Parietal Lobe4.3 ± 0.59
Pontine Tegmentum4.47 ± 0.64
Striatum4.97 ± 0.55
Subthalamus4.74 ± 0.39
Temporal Lobe4.48 ± 0.58
Thalamus4.41 ± 0.6
White Matter6.46 ± 0.43
Mouse Brain ISH
Gene Symbol Brain Structure ID Brain Structure Name Express Desity/Level (Meatured by ISH) Express Bar
VldlrCBCerebellum0
0
VldlrCTXCerebral cortex0
0
VldlrHIPHippocampal region0
0
VldlrHPFHippocampal formation0
0
VldlrHYHypothalamus0
0
VldlrLSXLateral septal complex0
0
VldlrMBMidbrain0
0
VldlrMYMedulla0
0
VldlrOLFOlfactory bulb0
0
VldlrPPons0
0
VldlrPALPallidum0
0
VldlrRHPRetrohippocampal region0
0
VldlrsAMYStriatum-like amygdalar nuclei0
0
VldlrSTRStriatum0
0
VldlrSTRdStriatum dorsal region0
0
VldlrSTRvStriatum ventral region0
0
VldlrTHThalamus0
0
Peptide Top
Peptide Name Peptide Lengh Peptide Start Peptide End Peptide Sequence Source
PAp00040330 31 673 703 FTGSELATLVNNLNDAQDIIVYHELVQPSGK Peptide Atlas
VLDLR_HUMAN_450 9 450 458 DIRKIGLER PRIDE

Simple Query:


  (e.g. CHD8)

Syndromic Genes

Non-syndromic Genes

AutismKB Statistics

  • Studies: 1,036
  • Genes: 1,379
  • CNVs/SVs: 5,420
  • SNVs/Indels: 11,669
  • de novo Mutations: 5,669
  • Mosaics: 789
  • Linkage Regions: 172
  • Paper Collected: 6/30/2018
  • Last Update: 8/26/2018


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