Annotation Detail for CLIP2
Basic Information Top
| Gene Symbol: | CLIP2 ( CLIP,CLIP-115,CYLN2,KIAA0291,MGC11333,WBSCR3,WBSCR4,WSCR3,WSCR4 ) |
|---|---|
| Gene Full Name: | CAP-GLY domain containing linker protein 2 |
| Band: | 7q11.23 |
| Quick Links | Entrez ID:7461; OMIM: 603432; Uniprot ID:CLIP2_HUMAN; ENSEMBL ID: ENSG00000106665; HGNC ID: 2586 |
| Relate to Another Database: | SFARIGene; denovo-db |
- Unigene ID: Hs.647018
| Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
|---|---|---|---|
 | |||
| embryoid body | 3 / 70761 | 42 |  |
| blastocyst | 2 / 62319 | 32 | |
| fetus | 21 / 564012 | 37 | |
| neonate | 0 / 31097 | 0 | |
| infant | 0 / 23620 | 0 | |
| juvenile | 0 / 55556 | 0 | |
| adult | 66 / 1939121 | 34 | |
| Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
|---|---|---|---|
| |||
| adrenal tumor | 0 / 12794 | 0 | |
| bladder carcinoma | 0 / 17475 | 0 | |
| breast (mammary gland) tumor | 0 / 94178 | 0 | |
| cervical tumor | 0 / 34366 | 0 | |
| chondrosarcoma | 8 / 82823 | 96 |  |
| colorectal tumor | 7 / 114246 | 61 | |
| esophageal tumor | 0 / 17290 | 0 | |
| gastrointestinal tumor | 7 / 119369 | 58 | |
| germ cell tumor | 15 / 263845 | 56 | |
| glioma | 17 / 106883 | 159 | |
| head and neck tumor | 3 / 136302 | 22 | |
| kidney tumor | 2 / 68959 | 29 | |
| leukemia | 2 / 95842 | 20 | |
| liver tumor | 1 / 96359 | 10 |  |
| lung tumor | 2 / 103127 | 19 | |
| lymphoma | 3 / 71755 | 41 | |
| non-neoplasia | 8 / 97250 | 82 | |
| normal | 95 / 3360307 | 28 | |
| ovarian tumor | 6 / 76682 | 78 | |
| pancreatic tumor | 9 / 104616 | 86 | |
| primitive neuroectodermal tumor of the CNS | 6 / 125680 | 47 | |
| prostate cancer | 1 / 102680 | 9 | |
| retinoblastoma | 0 / 46356 | 0 | |
| skin tumor | 0 / 124949 | 0 | |
| soft tissue/muscle tissue tumor | 1 / 125191 | 7 | |
| uterine tumor | 0 / 90257 | 0 |
| Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
|---|---|---|---|
| |||
| adipose tissue | 0 / 13106 | 0 | |
| adrenal gland | 0 / 33197 | 0 | |
| ascites | 5 / 40015 | 124 | |
| bladder | 0 / 29757 | 0 | |
| blood | 0 / 123478 | 0 | |
| bone | 8 / 71655 | 111 | |
| bone marrow | 0 / 48801 | 0 | |
| brain | 65 / 1100989 | 59 | |
| cervix | 0 / 48171 | 0 | |
| connective tissue | 5 / 149255 | 33 | |
| ear | 0 / 16212 | 0 | |
| embryonic tissue | 8 / 215722 | 37 | |
| esophagus | 0 / 20209 | 0 | |
| eye | 13 / 211054 | 61 | |
| heart | 2 / 89626 | 22 | |
| intestine | 10 / 234472 | 42 | |
| kidney | 4 / 211777 | 18 | |
| larynx | 0 / 24145 | 0 | |
| liver | 4 / 207743 | 19 | |
| lung | 10 / 336974 | 29 | |
| lymph | 3 / 44270 | 67 | |
| lymph node | 4 / 91610 | 43 | |
| mammary gland | 1 / 153271 | 6 | |
| mouth | 0 / 67052 | 0 | |
| muscle | 2 / 107715 | 18 | |
| nerve | 0 / 15768 | 0 | |
| ovary | 7 / 102051 | 68 | |
| pancreas | 9 / 214812 | 41 | |
| parathyroid | 0 / 20539 | 0 | |
| pharynx | 0 / 41328 | 0 | |
| pituitary gland | 0 / 16585 | 0 | |
| placenta | 0 / 280825 | 0 | |
| prostate | 1 / 189345 | 5 | |
| salivary gland | 3 / 20155 | 148 | |
| skin | 1 / 210574 | 4 | |
| spleen | 0 / 53952 | 0 | |
| stomach | 2 / 96619 | 20 | |
| testis | 4 / 330442 | 12 | |
| thymus | 2 / 81131 | 24 | |
| thyroid | 1 / 47473 | 21 | |
| tonsil | 1 / 16999 | 58 | |
| trachea | 1 / 52413 | 19 | |
| umbilical cord | 2 / 13680 | 146 | |
| uterus | 2 / 232878 | 8 | |
| vascular | 1 / 51780 | 19 | |
- Microarray Platform: GeneAtlas U133A, gcrma
- Affymatrix Probe ID: 211031_s_at
| Cell line | Expression level | Expression bar |
|---|---|---|
| ||
| 721_B_lymphoblasts | 66.55 | |
| Adipocyte | 4.55 | |
| AdrenalCortex | 4.8 | |
| Adrenalgland | 3.85 | |
| Amygdala | 62.6 | |
| Appendix | 3.95 | |
| AtrioventricularNode | 3.35 | |
| BDCA4+_DentriticCells | 5.35 | |
| Bonemarrow | 4.15 | |
| BronchialEpithelialCells | 4.35 | |
| CD105+_Endothelial | 4.7 | |
| CD14+_Monocytes | 13.65 | |
| CD19+_BCells(neg._sel.) | 15.65 | |
| CD33+_Myeloid | 11.25 | |
| CD34+ | 24.05 | |
| CD4+_Tcells | 4.55 | |
| CD56+_NKCells | 8 | |
| CD71+_EarlyErythroid | 3.95 | |
| CD8+_Tcells | 3.95 | |
| CardiacMyocytes | 5.8 | |
| Caudatenucleus | 26.7 | |
| Cerebellum | 6.05 | |
| CerebellumPeduncles | 29.8 | |
| CiliaryGanglion | 3.45 | |
| CingulateCortex | 84.5 | |
| Colorectaladenocarcinoma | 75.5 | |
| DorsalRootGanglion | 3.65 | |
| FetalThyroid | 3.95 | |
| Fetalbrain | 126.9 | |
| Fetalliver | 3.7 | |
| Fetallung | 3.7 | |
| GlobusPallidus | 29.6 | |
| Heart | 5.5 | |
| Hypothalamus | 43.05 | |
| Kidney | 3.55 | |
| Leukemia_chronicMyelogenousK-562 | 6.25 | |
| Leukemia_promyelocytic-HL-60 | 3.75 | |
| Leukemialymphoblastic(MOLT-4) | 3.5 | |
| Liver | 5.85 | |
| Lung | 5.2 | |
| Lymphnode | 3.9 | |
| Lymphoma_burkitts(Daudi) | 5.8 | |
| Lymphoma_burkitts(Raji) | 58.2 | |
| MedullaOblongata | 41.4 | |
| OccipitalLobe | 34.15 | |
| OlfactoryBulb | 38.55 | |
| Ovary | 2.95 | |
| Pancreas | 3.7 | |
| PancreaticIslet | 4.7 | |
| ParietalLobe | 39.1 | |
| Pituitary | 5.2 | |
| Placenta | 8.9 | |
| Pons | 48.1 | |
| PrefrontalCortex | 196.75 | |
| Prostate | 5.85 | |
| Salivarygland | 3.5 | |
| SkeletalMuscle | 5.2 | |
| Skin | 3.45 | |
| SmoothMuscle | 11.6 | |
| Spinalcord | 92.1 | |
| SubthalamicNucleus | 32.1 | |
| SuperiorCervicalGanglion | 5 | |
| TemporalLobe | 48.7 | |
| Testis | 3.6 | |
| TestisGermCell | 3.6 | |
| TestisIntersitial | 3.5 | |
| TestisLeydigCell | 4.3 | |
| TestisSeminiferousTubule | 3.6 | |
| Thalamus | 70.85 | |
| Thymus | 3.65 | |
| Thyroid | 5.45 | |
| Tongue | 4.5 | |
| Tonsil | 4.45 | |
| Trachea | 3.55 | |
| TrigeminalGanglion | 4.35 | |
| Uterus | 3.8 | |
| UterusCorpus | 10.7 | |
| WholeBlood | 5.05 | |
| Wholebrain | 86.2 | |
| colon | 4.65 | |
| pineal_day | 10.5 | |
| pineal_night | 8 | |
| retina | 31.25 | |
| small_intestine | 4.45 | |
- Probe name: CUST_7081_PI416261804
- Donor H0351.2001
- Sex: Male Age: 24 years Race/Ethnicity: African American Handedness: Left
- Tissue Receipt Date: 7/29/2009 Serology: Pass Tissue pH :6.72 Additional Medical Information :History of asthma
- Postmortem Interval: 23 hours (estimated time of death to time that tissue is frozen)
- Toxicology: Positive for atropine and caffeine, at levels usually not toxicologically significant
| Tissue | Expression(mean ± stddev) | Expression Bar |
|---|---|---|
| Amygdala | 7.17 ± 0.46 | ![](../"images/bar_3.png"){kind=small}   |
| Basal Forebrain | 7.01 ± 0.46 | |
| Basal Part of Pons | 7 ± 0.42 | |
| Cerebellar Cortex | 6.63 ± 0.22 | |
| Cerebellar Nuclei | 6.96 ± 0.33 | |
| Claustrum | 7.67 ± 0.47 | |
| Epithalamus | 6.69 ± 0.28 | |
| Frontal Lobe | 6.74 ± 0.43 | |
| Globus Pallidus | 7.68 ± 0.28 | |
| Hypothalamus | 6.63 ± 0.31 | |
| Insula | 6.66 ± 0.39 | |
| Limbic Lobe | 7.01 ± 0.55 | |
| Mesencephalon | 6.94 ± 0.47 | |
| Myelencephalon | 6.93 ± 0.54 | |
| Occipital Lobe | 7.21 ± 0.54 | |
| Parietal Lobe | 6.89 ± 0.44 | |
| Pontine Tegmentum | 6.82 ± 0.38 | |
| Striatum | 6.74 ± 0.49 | |
| Subthalamus | 6.67 ± 0.36 | |
| Temporal Lobe | 6.79 ± 0.41 | |
| Thalamus | 6.78 ± 0.4 | |
| White Matter | 8.16 ± 0.54 | |
Mouse Brain ISH 
| Gene Symbol | Brain Structure ID | Brain Structure Name | Express Desity/Level (Meatured by ISH) | Express Bar |
|---|---|---|---|---|
| Cyln2 | CB | Cerebellum | 61.34 | |
| 52.46 | | |||
| Cyln2 | CTX | Cerebral cortex | 100 | |
| 94.77 | | |||
| Cyln2 | HIP | Hippocampal region | 91.36 | |
| 100 | | |||
| Cyln2 | HPF | Hippocampal formation | 92.89 | |
| 99.45 | | |||
| Cyln2 | HY | Hypothalamus | 72.91 | |
| 72.06 | | |||
| Cyln2 | LSX | Lateral septal complex | 66.66 | |
| 57.01 | | |||
| Cyln2 | MB | Midbrain | 69.92 | |
| 55.86 | | |||
| Cyln2 | MY | Medulla | 63.99 | |
| 50.53 | | |||
| Cyln2 | OLF | Olfactory bulb | 92.91 | |
| 98.38 | | |||
| Cyln2 | P | Pons | 62.83 | |
| 47.04 | | |||
| Cyln2 | PAL | Pallidum | 79.21 | |
| 71.5 | | |||
| Cyln2 | RHP | Retrohippocampal region | 94.16 | |
| 96.81 | | |||
| Cyln2 | sAMY | Striatum-like amygdalar nuclei | 82.62 | |
| 82.41 | | |||
| Cyln2 | STR | Striatum | 73.83 | |
| 67.96 | | |||
| Cyln2 | STRd | Striatum dorsal region | 72.56 | |
| 63.09 | | |||
| Cyln2 | STRv | Striatum ventral region | 71.65 | |
| 71.84 | | |||
| Cyln2 | TH | Thalamus | 84.77 | |
| 75.2 | |
| Peptide Name | Peptide Lengh | Peptide Start | Peptide End | Peptide Sequence | Source |
|---|---|---|---|---|---|
| PAp00000737 | 16 | 385 | 400 | ATSHICEVEKEIALLK | Peptide Atlas |