AutismKB 2.0

Annotation Detail for CA9


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Basic Information Top
Gene Symbol:CA9 ( CAIX,MN )
Gene Full Name: carbonic anhydrase IX
Band: 9p13.3
Quick LinksEntrez ID:768; OMIM: 603179; Uniprot ID:CAH9_HUMAN; ENSEMBL ID: ENSG00000107159; HGNC ID: 1383
Relate to Another Database: SFARIGene; denovo-db
Unigene EST Top
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
embryoid body0 / 707610 
blastocyst0 / 623190 
fetus2 / 5640123
neonate0 / 310970 
infant0 / 236200 
juvenile0 / 555560 
adult34 / 193912117
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
adrenal tumor0 / 127940 
bladder carcinoma0 / 174750 
breast (mammary gland) tumor0 / 941780 
cervical tumor3 / 3436687
chondrosarcoma3 / 8282336
colorectal tumor7 / 11424661
esophageal tumor0 / 172900 
gastrointestinal tumor7 / 11936958
germ cell tumor0 / 2638450 
glioma2 / 10688318
head and neck tumor1 / 1363027
kidney tumor1 / 6895914
leukemia3 / 9584231
liver tumor0 / 963590 
lung tumor1 / 1031279
lymphoma0 / 717550 
non-neoplasia1 / 9725010
normal21 / 33603076
ovarian tumor1 / 7668213
pancreatic tumor1 / 1046169
primitive neuroectodermal tumor of the CNS3 / 12568023
prostate cancer0 / 1026800 
retinoblastoma0 / 463560 
skin tumor0 / 1249490 
soft tissue/muscle tissue tumor0 / 1251910 
uterine tumor4 / 9025744
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
adipose tissue1 / 1310676
adrenal gland0 / 331970 
ascites5 / 40015124
bladder0 / 297570 
blood3 / 12347824
bone3 / 7165541
bone marrow0 / 488010 
brain6 / 11009895
cervix8 / 48171166
connective tissue1 / 1492556
ear0 / 162120 
embryonic tissue0 / 2157220 
esophagus0 / 202090 
eye2 / 2110549
heart0 / 896260 
intestine10 / 23447242
kidney4 / 21177718
larynx0 / 241450 
liver0 / 2077430 
lung2 / 3369745
lymph0 / 442700 
lymph node0 / 916100 
mammary gland0 / 1532710 
mouth0 / 670520 
muscle0 / 1077150 
nerve0 / 157680 
ovary1 / 1020519
pancreas5 / 21481223
parathyroid0 / 205390 
pharynx0 / 413280 
pituitary gland0 / 165850 
placenta3 / 28082510
prostate0 / 1893450 
salivary gland0 / 201550 
skin0 / 2105740 
spleen0 / 539520 
stomach5 / 9661951
testis3 / 3304429
thymus0 / 811310 
thyroid1 / 4747321
tonsil0 / 169990 
trachea0 / 524130 
umbilical cord0 / 136800 
uterus4 / 23287817
vascular0 / 517800 
Microarray in BioGPS Top
Select probe  
  • Microarray Platform: GeneAtlas U133A, gcrma
  • Affymatrix Probe ID: 205199_at
Cell line Expression level Expression bar
721_B_lymphoblasts13.4
Adipocyte10.1
AdrenalCortex10.9
Adrenalgland8.55
Amygdala10.6
Appendix11.4
AtrioventricularNode8.15
BDCA4+_DentriticCells11.3
Bonemarrow9.9
BronchialEpithelialCells10.05
CD105+_Endothelial10.3
CD14+_Monocytes10.9
CD19+_BCells(neg._sel.)10.95
CD33+_Myeloid13.3
CD34+13.2
CD4+_Tcells11.15
CD56+_NKCells12.2
CD71+_EarlyErythroid9.4
CD8+_Tcells10.1
CardiacMyocytes12.5
Caudatenucleus9.1
Cerebellum8.2
CerebellumPeduncles11.4
CiliaryGanglion7.1
CingulateCortex10.3
Colorectaladenocarcinoma10.15
DorsalRootGanglion10.55
FetalThyroid9.85
Fetalbrain10.25
Fetalliver8.85
Fetallung8.6
GlobusPallidus7.3
Heart12.6
Hypothalamus11.05
Kidney8.05
Leukemia_chronicMyelogenousK-5629.2
Leukemia_promyelocytic-HL-608.25
Leukemialymphoblastic(MOLT-4)8.25
Liver13.15
Lung11.35
Lymphnode8.85
Lymphoma_burkitts(Daudi)12.85
Lymphoma_burkitts(Raji)14
MedullaOblongata9.45
OccipitalLobe9.2
OlfactoryBulb8.05
Ovary6.65
Pancreas8.15
PancreaticIslet15.15
ParietalLobe10.75
Pituitary11.9
Placenta10.55
Pons9.6
PrefrontalCortex12.95
Prostate12.1
Salivarygland8.05
SkeletalMuscle14
Skin17.45
SmoothMuscle11.55
Spinalcord10.85
SubthalamicNucleus9.15
SuperiorCervicalGanglion12.1
TemporalLobe9.25
Testis8.9
TestisGermCell10.75
TestisIntersitial15.9
TestisLeydigCell17.7
TestisSeminiferousTubule8.8
Thalamus10.3
Thymus8
Thyroid12.9
Tongue11.1
Tonsil9.85
Trachea8.5
TrigeminalGanglion10.1
Uterus8.45
UterusCorpus9.1
WholeBlood11
Wholebrain8.7
colon10.25
pineal_day12.06
pineal_night11.1
retina12.475
small_intestine11.95
Allen Brain Atlas Top
Human Whole Brain Microarrayview in Allen Brain Atlas
  • Probe id     Donor id      
  • Probe name: CUST_12862_PI416261804
  • Donor H0351.2001
  • Sex: Male     Age: 24 years     Race/Ethnicity: African American     Handedness: Left
  • Tissue Receipt Date: 7/29/2009     Serology: Pass      Tissue pH :6.72     Additional Medical Information :History of asthma
  • Postmortem Interval: 23 hours (estimated time of death to time that tissue is frozen)
  • Toxicology: Positive for atropine and caffeine, at levels usually not toxicologically significant
Tissue Expression(mean ± stddev) Expression Bar
Amygdala1.97 ± 1.11
Basal Forebrain1.61 ± 0.33
Basal Part of Pons1.23 ± 0.45
Cerebellar Cortex1.8 ± 0.96
Cerebellar Nuclei1.83 ± 0.75
Claustrum2.28 ± 0.91
Epithalamus1.22 ± 0.83
Frontal Lobe1.37 ± 0.7
Globus Pallidus1.92 ± 0.53
Hypothalamus1.6 ± 0.75
Insula1.35 ± 0.56
Limbic Lobe1.61 ± 0.75
Mesencephalon1.72 ± 0.79
Myelencephalon1.56 ± 0.72
Occipital Lobe1.64 ± 1.03
Parietal Lobe1.52 ± 0.85
Pontine Tegmentum1.56 ± 0.8
Striatum1.52 ± 0.58
Subthalamus1.62 ± 0.63
Temporal Lobe1.37 ± 0.59
Thalamus1.48 ± 0.69
White Matter2.02 ± 0.26
Mouse Brain ISH
Gene Symbol Brain Structure ID Brain Structure Name Express Desity/Level (Meatured by ISH) Express Bar
Car9CBCerebellum0.84
1.11
Car9CTXCerebral cortex0.4
0.4
Car9HIPHippocampal region0.61
0.65
Car9HPFHippocampal formation0.52
0.57
Car9HYHypothalamus0.34
0.33
Car9LSXLateral septal complex1.23
0.87
Car9MBMidbrain0.67
0.91
Car9MYMedulla1.2
1.23
Car9OLFOlfactory bulb0.3
0.33
Car9PPons0.81
0.95
Car9PALPallidum0.17
0.26
Car9RHPRetrohippocampal region0.36
0.44
Car9sAMYStriatum-like amygdalar nuclei0.14
0.1
Car9STRStriatum0.83
0.71
Car9STRdStriatum dorsal region0.98
0.88
Car9STRvStriatum ventral region0.27
0.27
Car9THThalamus0.79
0.71
Peptide Top

Simple Query:


  (e.g. CHD8)

Syndromic Genes

Non-syndromic Genes

AutismKB Statistics

  • Studies: 1,036
  • Genes: 1,379
  • CNVs/SVs: 5,420
  • SNVs/Indels: 11,669
  • de novo Mutations: 5,669
  • Mosaics: 789
  • Linkage Regions: 172
  • Paper Collected: 6/30/2018
  • Last Update: 8/26/2018


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