AutismKB 2.0

Annotation Detail for PCGF2


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Basic Information Top
Gene Symbol:PCGF2 ( MEL-18,MGC10545,RNF110,ZNF144 )
Gene Full Name: polycomb group ring finger 2
Band: 17q12
Quick LinksEntrez ID:7703; OMIM: 600346; Uniprot ID:PCGF2_HUMAN; ENSEMBL ID: ENSG00000056661; HGNC ID: 12929
Relate to Another Database: SFARIGene; denovo-db
Unigene EST Top
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
embryoid body1 / 7076114
blastocyst1 / 6231916
fetus18 / 56401231
neonate0 / 310970 
infant0 / 236200 
juvenile1 / 5555617
adult87 / 193912144
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
adrenal tumor0 / 127940 
bladder carcinoma2 / 17475114
breast (mammary gland) tumor1 / 9417810
cervical tumor1 / 3436629
chondrosarcoma6 / 8282372
colorectal tumor7 / 11424661
esophageal tumor1 / 1729057
gastrointestinal tumor6 / 11936950
germ cell tumor3 / 26384511
glioma4 / 10688337
head and neck tumor9 / 13630266
kidney tumor3 / 6895943
leukemia0 / 958420 
liver tumor4 / 9635941
lung tumor5 / 10312748
lymphoma0 / 717550 
non-neoplasia2 / 9725020
normal100 / 336030729
ovarian tumor4 / 7668252
pancreatic tumor2 / 10461619
primitive neuroectodermal tumor of the CNS4 / 12568031
prostate cancer0 / 1026800 
retinoblastoma0 / 463560 
skin tumor3 / 12494924
soft tissue/muscle tissue tumor3 / 12519123
uterine tumor3 / 9025733
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
adipose tissue0 / 131060 
adrenal gland0 / 331970 
ascites1 / 4001524
bladder1 / 2975733
blood0 / 1234780 
bone7 / 7165597
bone marrow0 / 488010 
brain27 / 110098924
cervix3 / 4817162
connective tissue5 / 14925533
ear0 / 162120 
embryonic tissue6 / 21572227
esophagus1 / 2020949
eye24 / 211054113
heart5 / 8962655
intestine11 / 23447246
kidney8 / 21177737
larynx2 / 2414582
liver4 / 20774319
lung14 / 33697441
lymph0 / 442700 
lymph node3 / 9161032
mammary gland3 / 15327119
mouth0 / 670520 
muscle0 / 1077150 
nerve0 / 157680 
ovary3 / 10205129
pancreas3 / 21481213
parathyroid0 / 205390 
pharynx1 / 4132824
pituitary gland0 / 165850 
placenta14 / 28082549
prostate3 / 18934515
salivary gland5 / 20155248
skin4 / 21057418
spleen1 / 5395218
stomach2 / 9661920
testis3 / 3304429
thymus0 / 811310 
thyroid3 / 4747363
tonsil0 / 169990 
trachea0 / 524130 
umbilical cord0 / 136800 
uterus7 / 23287830
vascular0 / 517800 
Microarray in BioGPS Top
Select probe  
  • Microarray Platform: GeneAtlas U133A, gcrma
  • Affymatrix Probe ID: 203793_x_at
Cell line Expression level Expression bar
721_B_lymphoblasts6.35
Adipocyte10.7
AdrenalCortex13.6
Adrenalgland6.7
Amygdala5.55
Appendix8.55
AtrioventricularNode12.9
BDCA4+_DentriticCells4.65
Bonemarrow6.1
BronchialEpithelialCells5.55
CD105+_Endothelial4.35
CD14+_Monocytes4.7
CD19+_BCells(neg._sel.)4.9
CD33+_Myeloid6.75
CD34+5.95
CD4+_Tcells5.55
CD56+_NKCells6.3
CD71+_EarlyErythroid4.2
CD8+_Tcells4.55
CardiacMyocytes8.35
Caudatenucleus5
Cerebellum9.05
CerebellumPeduncles18.6
CiliaryGanglion6.2
CingulateCortex7.5
Colorectaladenocarcinoma18.7
DorsalRootGanglion7.45
FetalThyroid11.35
Fetalbrain26.2
Fetalliver4.6
Fetallung9.15
GlobusPallidus7.25
Heart9.3
Hypothalamus6.8
Kidney8.45
Leukemia_chronicMyelogenousK-5626.8
Leukemia_promyelocytic-HL-604.35
Leukemialymphoblastic(MOLT-4)4.25
Liver7.3
Lung7.25
Lymphnode5.05
Lymphoma_burkitts(Daudi)5.75
Lymphoma_burkitts(Raji)6.45
MedullaOblongata5.8
OccipitalLobe6.65
OlfactoryBulb8.7
Ovary7.65
Pancreas7.85
PancreaticIslet6.4
ParietalLobe8.1
Pituitary12.7
Placenta6.35
Pons14.1
PrefrontalCortex9.8
Prostate9.05
Salivarygland4.45
SkeletalMuscle15.05
Skin4.65
SmoothMuscle7.4
Spinalcord8.95
SubthalamicNucleus6.95
SuperiorCervicalGanglion7.45
TemporalLobe8.3
Testis4.85
TestisGermCell6.95
TestisIntersitial6.6
TestisLeydigCell7.2
TestisSeminiferousTubule7.5
Thalamus6.4
Thymus5.25
Thyroid11.2
Tongue5.4
Tonsil5.7
Trachea5.25
TrigeminalGanglion7.1
Uterus5.5
UterusCorpus5.35
WholeBlood6.2
Wholebrain4.4
colon5.6
pineal_day12.3
pineal_night7.18
retina14.175
small_intestine5.25
Allen Brain Atlas Top
Human Whole Brain Microarrayview in Allen Brain Atlas
  • Probe id     Donor id      
  • Probe name: CUST_7267_PI416261804
  • Donor H0351.2001
  • Sex: Male     Age: 24 years     Race/Ethnicity: African American     Handedness: Left
  • Tissue Receipt Date: 7/29/2009     Serology: Pass      Tissue pH :6.72     Additional Medical Information :History of asthma
  • Postmortem Interval: 23 hours (estimated time of death to time that tissue is frozen)
  • Toxicology: Positive for atropine and caffeine, at levels usually not toxicologically significant
Tissue Expression(mean ± stddev) Expression Bar
Amygdala6.55 ± 1.05
Basal Forebrain6.23 ± 0.45
Basal Part of Pons5.93 ± 0.39
Cerebellar Cortex6.09 ± 0.56
Cerebellar Nuclei6.69 ± 0.62
Claustrum6.99 ± 0.8
Epithalamus5.5 ± 0.32
Frontal Lobe6.08 ± 0.61
Globus Pallidus7.03 ± 0.57
Hypothalamus6.02 ± 0.72
Insula6.1 ± 0.57
Limbic Lobe6.27 ± 0.7
Mesencephalon6.44 ± 0.77
Myelencephalon6.21 ± 0.71
Occipital Lobe6.46 ± 0.73
Parietal Lobe6.23 ± 0.7
Pontine Tegmentum6.25 ± 0.65
Striatum6.37 ± 0.8
Subthalamus6.18 ± 0.47
Temporal Lobe6.12 ± 0.75
Thalamus6.24 ± 0.65
White Matter6.78 ± 0.2
Mouse Brain ISH
Gene Symbol Brain Structure ID Brain Structure Name Express Desity/Level (Meatured by ISH) Express Bar
Pcgf2CBCerebellum0
0
Pcgf2CTXCerebral cortex0
0
Pcgf2HIPHippocampal region0
0
Pcgf2HPFHippocampal formation0
0
Pcgf2HYHypothalamus0
0
Pcgf2LSXLateral septal complex0
0
Pcgf2MBMidbrain0
0
Pcgf2MYMedulla0
0
Pcgf2OLFOlfactory bulb0
0
Pcgf2PPons0
0
Pcgf2PALPallidum0
0
Pcgf2RHPRetrohippocampal region0
0
Pcgf2sAMYStriatum-like amygdalar nuclei0
0
Pcgf2STRStriatum0
0
Pcgf2STRdStriatum dorsal region0
0
Pcgf2STRvStriatum ventral region0
0
Pcgf2THThalamus0
0
Peptide Top

Simple Query:


  (e.g. CHD8)

Syndromic Genes

Non-syndromic Genes

AutismKB Statistics

  • Studies: 1,036
  • Genes: 1,379
  • CNVs/SVs: 5,420
  • SNVs/Indels: 11,669
  • de novo Mutations: 5,669
  • Mosaics: 789
  • Linkage Regions: 172
  • Paper Collected: 6/30/2018
  • Last Update: 8/26/2018


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