Annotation Detail for CACNA1C
Basic Information Top
| Gene Symbol: | CACNA1C ( CACH2,CACN2,CACNL1A1,CCHL1A1,CaV1.2,MGC120730,TS ) |
|---|---|
| Gene Full Name: | calcium channel, voltage-dependent, L type, alpha 1C subunit |
| Band: | 12p13.33 |
| Quick Links | Entrez ID:775; OMIM: 114205; Uniprot ID:CAC1C_HUMAN; ENSEMBL ID: ENSG00000151067; HGNC ID: 1390 |
| Relate to Another Database: | SFARIGene; denovo-db |
- Unigene ID: Hs.118262
| Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
|---|---|---|---|
 | |||
| embryoid body | 1 / 70761 | 14 |  |
| blastocyst | 0 / 62319 | 0 | |
| fetus | 13 / 564012 | 23 | |
| neonate | 0 / 31097 | 0 | |
| infant | 1 / 23620 | 42 | |
| juvenile | 0 / 55556 | 0 | |
| adult | 42 / 1939121 | 21 | |
| Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
|---|---|---|---|
| |||
| adrenal tumor | 0 / 12794 | 0 | |
| bladder carcinoma | 0 / 17475 | 0 | |
| breast (mammary gland) tumor | 4 / 94178 | 42 | |
| cervical tumor | 0 / 34366 | 0 | |
| chondrosarcoma | 0 / 82823 | 0 | |
| colorectal tumor | 2 / 114246 | 17 | |
| esophageal tumor | 0 / 17290 | 0 | |
| gastrointestinal tumor | 1 / 119369 | 8 |  |
| germ cell tumor | 7 / 263845 | 26 | |
| glioma | 1 / 106883 | 9 | |
| head and neck tumor | 0 / 136302 | 0 | |
| kidney tumor | 0 / 68959 | 0 | |
| leukemia | 0 / 95842 | 0 | |
| liver tumor | 0 / 96359 | 0 | |
| lung tumor | 0 / 103127 | 0 | |
| lymphoma | 0 / 71755 | 0 | |
| non-neoplasia | 1 / 97250 | 10 | |
| normal | 83 / 3360307 | 24 | |
| ovarian tumor | 2 / 76682 | 26 | |
| pancreatic tumor | 1 / 104616 | 9 | |
| primitive neuroectodermal tumor of the CNS | 0 / 125680 | 0 | |
| prostate cancer | 0 / 102680 | 0 | |
| retinoblastoma | 0 / 46356 | 0 | |
| skin tumor | 0 / 124949 | 0 | |
| soft tissue/muscle tissue tumor | 1 / 125191 | 7 | |
| uterine tumor | 1 / 90257 | 11 | |
| Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
|---|---|---|---|
| |||
| adipose tissue | 0 / 13106 | 0 | |
| adrenal gland | 0 / 33197 | 0 | |
| ascites | 0 / 40015 | 0 | |
| bladder | 0 / 29757 | 0 | |
| blood | 0 / 123478 | 0 | |
| bone | 0 / 71655 | 0 | |
| bone marrow | 0 / 48801 | 0 | |
| brain | 32 / 1100989 | 29 | |
| cervix | 0 / 48171 | 0 | |
| connective tissue | 1 / 149255 | 6 | |
| ear | 0 / 16212 | 0 | |
| embryonic tissue | 2 / 215722 | 9 | |
| esophagus | 0 / 20209 | 0 | |
| eye | 4 / 211054 | 18 | |
| heart | 1 / 89626 | 11 | |
| intestine | 7 / 234472 | 29 | |
| kidney | 0 / 211777 | 0 | |
| larynx | 0 / 24145 | 0 | |
| liver | 1 / 207743 | 4 | |
| lung | 1 / 336974 | 2 | |
| lymph | 0 / 44270 | 0 | |
| lymph node | 0 / 91610 | 0 | |
| mammary gland | 5 / 153271 | 32 | |
| mouth | 0 / 67052 | 0 | |
| muscle | 0 / 107715 | 0 | |
| nerve | 0 / 15768 | 0 | |
| ovary | 2 / 102051 | 19 | |
| pancreas | 2 / 214812 | 9 | |
| parathyroid | 0 / 20539 | 0 | |
| pharynx | 0 / 41328 | 0 | |
| pituitary gland | 0 / 16585 | 0 | |
| placenta | 7 / 280825 | 24 | |
| prostate | 4 / 189345 | 21 | |
| salivary gland | 0 / 20155 | 0 | |
| skin | 1 / 210574 | 4 | |
| spleen | 4 / 53952 | 74 |  |
| stomach | 1 / 96619 | 10 | |
| testis | 12 / 330442 | 36 | |
| thymus | 2 / 81131 | 24 | |
| thyroid | 1 / 47473 | 21 | |
| tonsil | 0 / 16999 | 0 | |
| trachea | 0 / 52413 | 0 | |
| umbilical cord | 0 / 13680 | 0 | |
| uterus | 9 / 232878 | 38 | |
| vascular | 0 / 51780 | 0 |
- Microarray Platform: GeneAtlas U133A, gcrma
- Affymatrix Probe ID: 208020_s_at
| Cell line | Expression level | Expression bar |
|---|---|---|
| ||
| 721_B_lymphoblasts | 5.65 | |
| Adipocyte | 4.55 | |
| AdrenalCortex | 5.1 | |
| Adrenalgland | 3.95 | |
| Amygdala | 4.8 | |
| Appendix | 5 | |
| AtrioventricularNode | 3.75 | |
| BDCA4+_DentriticCells | 5 | |
| Bonemarrow | 4.7 | |
| BronchialEpithelialCells | 4.5 | |
| CD105+_Endothelial | 4.7 | |
| CD14+_Monocytes | 4.85 | |
| CD19+_BCells(neg._sel.) | 5.05 | |
| CD33+_Myeloid | 5.85 | |
| CD34+ | 6.15 | |
| CD4+_Tcells | 4.9 | |
| CD56+_NKCells | 5.4 | |
| CD71+_EarlyErythroid | 4.35 | |
| CD8+_Tcells | 4.35 | |
| CardiacMyocytes | 6.15 | |
| Caudatenucleus | 4.15 | |
| Cerebellum | 3.75 | |
| CerebellumPeduncles | 5.35 | |
| CiliaryGanglion | 3.45 | |
| CingulateCortex | 4.8 | |
| Colorectaladenocarcinoma | 4.65 | |
| DorsalRootGanglion | 3.65 | |
| FetalThyroid | 4.5 | |
| Fetalbrain | 4.55 | |
| Fetalliver | 4.05 | |
| Fetallung | 3.7 | |
| GlobusPallidus | 3.6 | |
| Heart | 6.2 | |
| Hypothalamus | 5 | |
| Kidney | 3.9 | |
| Leukemia_chronicMyelogenousK-562 | 4.2 | |
| Leukemia_promyelocytic-HL-60 | 4.1 | |
| Leukemialymphoblastic(MOLT-4) | 3.7 | |
| Liver | 6.2 | |
| Lung | 5 | |
| Lymphnode | 3.9 | |
| Lymphoma_burkitts(Daudi) | 6 | |
| Lymphoma_burkitts(Raji) | 6.6 | |
| MedullaOblongata | 4.2 | |
| OccipitalLobe | 4.15 | |
| OlfactoryBulb | 3.65 | |
| Ovary | 3.1 | |
| Pancreas | 3.75 | |
| PancreaticIslet | 4.95 | |
| ParietalLobe | 4.95 | |
| Pituitary | 5.4 | |
| Placenta | 4.65 | |
| Pons | 4.5 | |
| PrefrontalCortex | 5.65 | |
| Prostate | 5.35 | |
| Salivarygland | 3.75 | |
| SkeletalMuscle | 5.75 | |
| Skin | 3.75 | |
| SmoothMuscle | 5.25 | |
| Spinalcord | 4.95 | |
| SubthalamicNucleus | 4.3 | |
| SuperiorCervicalGanglion | 5.55 | |
| TemporalLobe | 4.25 | |
| Testis | 3.95 | |
| TestisGermCell | 3.85 | |
| TestisIntersitial | 3.9 | |
| TestisLeydigCell | 4.8 | |
| TestisSeminiferousTubule | 3.95 | |
| Thalamus | 4.75 | |
| Thymus | 3.55 | |
| Thyroid | 5.7 | |
| Tongue | 4.65 | |
| Tonsil | 4.5 | |
| Trachea | 3.85 | |
| TrigeminalGanglion | 4.85 | |
| Uterus | 3.75 | |
| UterusCorpus | 4.3 | |
| WholeBlood | 5 | |
| Wholebrain | 3.75 | |
| colon | 4.6 | |
| pineal_day | 5.7 | |
| pineal_night | 5.62 | |
| retina | 5.6 | |
| small_intestine | 4.45 | |
- Probe name: CUST_123_PI416408490
- Donor H0351.2001
- Sex: Male Age: 24 years Race/Ethnicity: African American Handedness: Left
- Tissue Receipt Date: 7/29/2009 Serology: Pass Tissue pH :6.72 Additional Medical Information :History of asthma
- Postmortem Interval: 23 hours (estimated time of death to time that tissue is frozen)
- Toxicology: Positive for atropine and caffeine, at levels usually not toxicologically significant
| Tissue | Expression(mean ± stddev) | Expression Bar |
|---|---|---|
| Amygdala | 8.06 ± 0.52 | ![](../"images/bar_3.png"){kind=small}   |
| Basal Forebrain | 7.59 ± 0.41 | |
| Basal Part of Pons | 8.41 ± 0.29 | |
| Cerebellar Cortex | 7.9 ± 0.21 | |
| Cerebellar Nuclei | 7.48 ± 0.45 | |
| Claustrum | 8.2 ± 0.3 | |
| Epithalamus | 7.08 ± 0.68 | |
| Frontal Lobe | 7.77 ± 0.38 | |
| Globus Pallidus | 6.18 ± 0.54 | |
| Hypothalamus | 7.54 ± 0.38 | |
| Insula | 8 ± 0.37 | |
| Limbic Lobe | 7.84 ± 0.61 | |
| Mesencephalon | 7.57 ± 0.55 | |
| Myelencephalon | 7.85 ± 0.53 | |
| Occipital Lobe | 8.61 ± 0.42 | |
| Parietal Lobe | 8.09 ± 0.42 | |
| Pontine Tegmentum | 7.85 ± 0.35 | |
| Striatum | 7.99 ± 0.49 | |
| Subthalamus | 7.24 ± 0.24 | |
| Temporal Lobe | 8.18 ± 0.36 | |
| Thalamus | 8.47 ± 0.38 | |
| White Matter | 5.78 ± 0.19 | |
Mouse Brain ISH 
| Gene Symbol | Brain Structure ID | Brain Structure Name | Express Desity/Level (Meatured by ISH) | Express Bar |
|---|---|---|---|---|
| Cacna1c | CB | Cerebellum | 12.26 | |
| 12.47 | | |||
| Cacna1c | CTX | Cerebral cortex | 37.29 | |
| 27 | | |||
| Cacna1c | HIP | Hippocampal region | 32.27 | |
| 53.92 | | |||
| Cacna1c | HPF | Hippocampal formation | 26.93 | |
| 37.89 | | |||
| Cacna1c | HY | Hypothalamus | 18.37 | |
| 12.85 | | |||
| Cacna1c | LSX | Lateral septal complex | 3.15 | |
| 1.95 | | |||
| Cacna1c | MB | Midbrain | 22.26 | |
| 18.29 | | |||
| Cacna1c | MY | Medulla | 34.55 | |
| 33.93 | | |||
| Cacna1c | OLF | Olfactory bulb | 54.63 | |
| 50.2 | | |||
| Cacna1c | P | Pons | 34.47 | |
| 31.88 | | |||
| Cacna1c | PAL | Pallidum | 17.93 | |
| 13.68 | | |||
| Cacna1c | RHP | Retrohippocampal region | 15.94 | |
| 13.61 | | |||
| Cacna1c | sAMY | Striatum-like amygdalar nuclei | 48.53 | |
| 33.59 | | |||
| Cacna1c | STR | Striatum | 32.02 | |
| 21.77 | | |||
| Cacna1c | STRd | Striatum dorsal region | 29.51 | |
| 19.94 | | |||
| Cacna1c | STRv | Striatum ventral region | 48.14 | |
| 31.61 | | |||
| Cacna1c | TH | Thalamus | 82.87 | |
| 79.15 | |
| Peptide Name | Peptide Lengh | Peptide Start | Peptide End | Peptide Sequence | Source |
|---|---|---|---|---|---|
| PAp01039288 | 13 | 1478 | 1490 | KCAPESEPSNSTE | Peptide Atlas |