AutismKB 2.0

Annotation Detail for CSDE1


View Evidences View Variants View Annotations
Basic Information Top
Gene Symbol:CSDE1 ( D1S155E,DKFZp779B0247,DKFZp779J1455,FLJ26882,RP5-1000E10.3,UNR )
Gene Full Name: cold shock domain containing E1, RNA-binding
Band: 1p13.2
Quick LinksEntrez ID:7812; OMIM: 191510; Uniprot ID:CSDE1_HUMAN; ENSEMBL ID: ENSG00000009307; HGNC ID: 29905
Relate to Another Database: SFARIGene; denovo-db
Unigene EST Top
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
embryoid body45 / 70761635
blastocyst46 / 62319738
fetus353 / 564012625
neonate19 / 31097610
infant12 / 23620508
juvenile46 / 55556827
adult922 / 1939121475
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
adrenal tumor4 / 12794312
bladder carcinoma14 / 17475801
breast (mammary gland) tumor34 / 94178361
cervical tumor26 / 34366756
chondrosarcoma29 / 82823350
colorectal tumor37 / 114246323
esophageal tumor7 / 17290404
gastrointestinal tumor71 / 119369594
germ cell tumor335 / 2638451269
glioma38 / 106883355
head and neck tumor93 / 136302682
kidney tumor33 / 68959478
leukemia46 / 95842479
liver tumor32 / 96359332
lung tumor11 / 103127106
lymphoma22 / 71755306
non-neoplasia39 / 97250401
normal1769 / 3360307526
ovarian tumor18 / 76682234
pancreatic tumor15 / 104616143
primitive neuroectodermal tumor of the CNS41 / 125680326
prostate cancer58 / 102680564
retinoblastoma27 / 46356582
skin tumor87 / 124949696
soft tissue/muscle tissue tumor65 / 125191519
uterine tumor42 / 90257465
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
adipose tissue5 / 13106381
adrenal gland13 / 33197391
ascites16 / 40015399
bladder30 / 297571008
blood37 / 123478299
bone35 / 71655488
bone marrow42 / 48801860
brain780 / 1100989708
cervix26 / 48171539
connective tissue61 / 149255408
ear1 / 1621261
embryonic tissue150 / 215722695
esophagus8 / 20209395
eye79 / 211054374
heart39 / 89626435
intestine94 / 234472400
kidney87 / 211777410
larynx7 / 24145289
liver66 / 207743317
lung85 / 336974252
lymph15 / 44270338
lymph node59 / 91610644
mammary gland78 / 153271508
mouth83 / 670521237
muscle105 / 107715974
nerve15 / 15768951
ovary21 / 102051205
pancreas54 / 214812251
parathyroid11 / 20539535
pharynx10 / 41328241
pituitary gland12 / 16585723
placenta107 / 280825381
prostate76 / 189345401
salivary gland13 / 20155645
skin134 / 210574636
spleen25 / 53952463
stomach53 / 96619548
testis497 / 3304421504
thymus104 / 811311281
thyroid18 / 47473379
tonsil4 / 16999235
trachea139 / 524132652
umbilical cord3 / 13680219
uterus139 / 232878596
vascular43 / 51780830
Microarray in BioGPS Top
Select probe  
  • Microarray Platform: GeneAtlas U133A, gcrma
  • Affymatrix Probe ID: 202646_s_at
Cell line Expression level Expression bar
721_B_lymphoblasts124.05
Adipocyte302.4
AdrenalCortex140.15
Adrenalgland78.95
Amygdala299.2
Appendix77.4
AtrioventricularNode46.35
BDCA4+_DentriticCells352.1
Bonemarrow28.15
BronchialEpithelialCells231.05
CD105+_Endothelial311.15
CD14+_Monocytes466.1
CD19+_BCells(neg._sel.)460.05
CD33+_Myeloid474.15
CD34+546.55
CD4+_Tcells297.45
CD56+_NKCells486.2
CD71+_EarlyErythroid135.75
CD8+_Tcells262.95
CardiacMyocytes173.15
Caudatenucleus152.35
Cerebellum45.7
CerebellumPeduncles152
CiliaryGanglion115.15
CingulateCortex247.65
Colorectaladenocarcinoma89.75
DorsalRootGanglion114
FetalThyroid373
Fetalbrain251.85
Fetalliver94.55
Fetallung165.75
GlobusPallidus126.7
Heart31.15
Hypothalamus372.15
Kidney39.05
Leukemia_chronicMyelogenousK-562111.95
Leukemia_promyelocytic-HL-60152.7
Leukemialymphoblastic(MOLT-4)152.3
Liver26.35
Lung38.3
Lymphnode139.1
Lymphoma_burkitts(Daudi)151.55
Lymphoma_burkitts(Raji)175.9
MedullaOblongata147.45
OccipitalLobe265.1
OlfactoryBulb256.5
Ovary92.6
Pancreas147.3
PancreaticIslet285.35
ParietalLobe218.05
Pituitary310.95
Placenta87.2
Pons134.4
PrefrontalCortex462.55
Prostate184.5
Salivarygland126.95
SkeletalMuscle366.55
Skin110.35
SmoothMuscle307.85
Spinalcord240.15
SubthalamicNucleus206.15
SuperiorCervicalGanglion30.45
TemporalLobe139.75
Testis116.75
TestisGermCell449.25
TestisIntersitial366.75
TestisLeydigCell194.35
TestisSeminiferousTubule264.65
Thalamus247.85
Thymus71.85
Thyroid516.6
Tongue293.75
Tonsil87.15
Trachea99.8
TrigeminalGanglion79.85
Uterus192.6
UterusCorpus70.65
WholeBlood251.55
Wholebrain88.25
colon90.7
pineal_day488.62
pineal_night470.42
retina223.375
small_intestine42.8
Allen Brain Atlas Top
Human Whole Brain Microarrayview in Allen Brain Atlas
  • Probe id     Donor id      
  • Probe name: A_23_P74595
  • Donor H0351.2001
  • Sex: Male     Age: 24 years     Race/Ethnicity: African American     Handedness: Left
  • Tissue Receipt Date: 7/29/2009     Serology: Pass      Tissue pH :6.72     Additional Medical Information :History of asthma
  • Postmortem Interval: 23 hours (estimated time of death to time that tissue is frozen)
  • Toxicology: Positive for atropine and caffeine, at levels usually not toxicologically significant
Tissue Expression(mean ± stddev) Expression Bar
Amygdala10.57 ± 0.2
Basal Forebrain10.89 ± 0.08
Basal Part of Pons10.99 ± 0.2
Cerebellar Cortex10.67 ± 0.18
Cerebellar Nuclei11.15 ± 0.14
Claustrum10.78 ± 0.26
Epithalamus10.98 ± 0.16
Frontal Lobe10.8 ± 0.25
Globus Pallidus11.32 ± 0.08
Hypothalamus10.83 ± 0.22
Insula10.69 ± 0.28
Limbic Lobe10.67 ± 0.26
Mesencephalon10.82 ± 0.23
Myelencephalon10.76 ± 0.22
Occipital Lobe10.66 ± 0.24
Parietal Lobe10.81 ± 0.21
Pontine Tegmentum10.78 ± 0.2
Striatum10.86 ± 0.18
Subthalamus11.04 ± 0.11
Temporal Lobe10.72 ± 0.19
Thalamus10.8 ± 0.17
White Matter11.39 ± 0.04
Mouse Brain ISH
Gene Symbol Brain Structure ID Brain Structure Name Express Desity/Level (Meatured by ISH) Express Bar
Csde1CBCerebellum51
100
Csde1CTXCerebral cortex100
100
Csde1HIPHippocampal region100
100
Csde1HPFHippocampal formation100
100
Csde1HYHypothalamus100
100
Csde1LSXLateral septal complex100
100
Csde1MBMidbrain100
100
Csde1MYMedulla96.86
100
Csde1OLFOlfactory bulb100
100
Csde1PPons92.44
100
Csde1PALPallidum100
100
Csde1RHPRetrohippocampal region100
100
Csde1sAMYStriatum-like amygdalar nuclei100
100
Csde1STRStriatum100
100
Csde1STRdStriatum dorsal region100
100
Csde1STRvStriatum ventral region100
100
Csde1THThalamus100
100
Peptide Top
Peptide Name Peptide Lengh Peptide Start Peptide End Peptide Sequence Source
CSDE1_HUMAN_0 0 0 0 VGDDVEFEVSSDRR PRIDE
CSDE1_HUMAN_499 10 499 508 PGQQVATCVR PRIDE
CSDE1_HUMAN_64 14 64 77 VGDDVEFEVSSDRR PRIDE
CSDE1_HUMAN_778 12 778 789 GPDNSMGFGAER PRIDE
PAp00000741 21 645 665 ATVECVKDQFGFINYEVGDSK Peptide Atlas

Simple Query:


  (e.g. CHD8)

Syndromic Genes

Non-syndromic Genes

AutismKB Statistics

  • Studies: 1,036
  • Genes: 1,379
  • CNVs/SVs: 5,420
  • SNVs/Indels: 11,669
  • de novo Mutations: 5,669
  • Mosaics: 789
  • Linkage Regions: 172
  • Paper Collected: 6/30/2018
  • Last Update: 8/26/2018


Copyright © 2017, Center for Bioinformatics , Peking University | All Rights Reserved