AutismKB 2.0

Annotation Detail for COLEC11


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Basic Information Top
Gene Symbol:COLEC11 ( CL-K1-I,CL-K1-II,CL-K1-IIa,CL-K1-IIb,CLK1,DKFZp686N1868,MGC3279 )
Gene Full Name: collectin sub-family member 11
Band: 2p25.3
Quick LinksEntrez ID:78989; OMIM: 612502; Uniprot ID:COL11_HUMAN; ENSEMBL ID: ENSG00000118004; HGNC ID: 17213
Relate to Another Database: SFARIGene; denovo-db
Unigene EST Top
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
embryoid body0 / 707610 
blastocyst0 / 623190 
fetus4 / 5640127
neonate0 / 310970 
infant0 / 236200 
juvenile0 / 555560 
adult15 / 19391217
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
adrenal tumor0 / 127940 
bladder carcinoma0 / 174750 
breast (mammary gland) tumor0 / 941780 
cervical tumor0 / 343660 
chondrosarcoma0 / 828230 
colorectal tumor0 / 1142460 
esophageal tumor0 / 172900 
gastrointestinal tumor0 / 1193690 
germ cell tumor4 / 26384515
glioma0 / 1068830 
head and neck tumor0 / 1363020 
kidney tumor1 / 6895914
leukemia0 / 958420 
liver tumor1 / 9635910
lung tumor1 / 1031279
lymphoma0 / 717550 
non-neoplasia0 / 972500 
normal22 / 33603076
ovarian tumor4 / 7668252
pancreatic tumor0 / 1046160 
primitive neuroectodermal tumor of the CNS76 / 125680604
prostate cancer0 / 1026800 
retinoblastoma0 / 463560 
skin tumor2 / 12494916
soft tissue/muscle tissue tumor0 / 1251910 
uterine tumor0 / 902570 
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
adipose tissue0 / 131060 
adrenal gland0 / 331970 
ascites0 / 400150 
bladder0 / 297570 
blood0 / 1234780 
bone0 / 716550 
bone marrow0 / 488010 
brain71 / 110098964
cervix0 / 481710 
connective tissue0 / 1492550 
ear0 / 162120 
embryonic tissue0 / 2157220 
esophagus0 / 202090 
eye2 / 2110549
heart1 / 8962611
intestine0 / 2344720 
kidney5 / 21177723
larynx0 / 241450 
liver4 / 20774319
lung1 / 3369742
lymph0 / 442700 
lymph node0 / 916100 
mammary gland2 / 15327113
mouth0 / 670520 
muscle0 / 1077150 
nerve0 / 157680 
ovary7 / 10205168
pancreas0 / 2148120 
parathyroid0 / 205390 
pharynx0 / 413280 
pituitary gland0 / 165850 
placenta2 / 2808257
prostate1 / 1893455
salivary gland0 / 201550 
skin2 / 2105749
spleen1 / 5395218
stomach0 / 966190 
testis4 / 33044212
thymus0 / 811310 
thyroid0 / 474730 
tonsil0 / 169990 
trachea0 / 524130 
umbilical cord0 / 136800 
uterus0 / 2328780 
vascular0 / 517800 
Microarray in BioGPS Top
Select probe  
  • Microarray Platform: GeneAtlas U133A, gcrma
  • Affymatrix Probe ID: 219873_at
Cell line Expression level Expression bar
721_B_lymphoblasts5.95
Adipocyte5.4
AdrenalCortex15
Adrenalgland22.95
Amygdala5.75
Appendix5.45
AtrioventricularNode4.2
BDCA4+_DentriticCells6
Bonemarrow5.35
BronchialEpithelialCells5.4
CD105+_Endothelial5.3
CD14+_Monocytes5.6
CD19+_BCells(neg._sel.)5.6
CD33+_Myeloid7
CD34+6.45
CD4+_Tcells5.8
CD56+_NKCells6.5
CD71+_EarlyErythroid5.05
CD8+_Tcells4.8
CardiacMyocytes7.4
Caudatenucleus4.9
Cerebellum4.75
CerebellumPeduncles6.15
CiliaryGanglion3.9
CingulateCortex5.6
Colorectaladenocarcinoma5.45
DorsalRootGanglion4.15
FetalThyroid5.45
Fetalbrain5.2
Fetalliver29.1
Fetallung5.05
GlobusPallidus3.95
Heart24.2
Hypothalamus6.05
Kidney18.85
Leukemia_chronicMyelogenousK-5624.9
Leukemia_promyelocytic-HL-604.85
Leukemialymphoblastic(MOLT-4)4.4
Liver95.75
Lung9.1
Lymphnode4.75
Lymphoma_burkitts(Daudi)6.85
Lymphoma_burkitts(Raji)7.65
MedullaOblongata5
OccipitalLobe4.9
OlfactoryBulb4.3
Ovary3.85
Pancreas4.7
PancreaticIslet9.3
ParietalLobe5.7
Pituitary6.4
Placenta5.7
Pons5.15
PrefrontalCortex6.75
Prostate7.55
Salivarygland4.35
SkeletalMuscle6.3
Skin4.15
SmoothMuscle6.2
Spinalcord5.8
SubthalamicNucleus4.95
SuperiorCervicalGanglion6.75
TemporalLobe4.8
Testis6.45
TestisGermCell5.55
TestisIntersitial5
TestisLeydigCell5.35
TestisSeminiferousTubule4.7
Thalamus5.5
Thymus5.1
Thyroid15.9
Tongue5.25
Tonsil5.1
Trachea4.4
TrigeminalGanglion5.45
Uterus4.45
UterusCorpus4.9
WholeBlood6
Wholebrain4.35
colon5.5
pineal_day6.82
pineal_night6.54
retina7.05
small_intestine12.7
Allen Brain Atlas Top
Human Whole Brain Microarrayview in Allen Brain Atlas
  • Probe id     Donor id      
  • Probe name: A_24_P388322
  • Donor H0351.2001
  • Sex: Male     Age: 24 years     Race/Ethnicity: African American     Handedness: Left
  • Tissue Receipt Date: 7/29/2009     Serology: Pass      Tissue pH :6.72     Additional Medical Information :History of asthma
  • Postmortem Interval: 23 hours (estimated time of death to time that tissue is frozen)
  • Toxicology: Positive for atropine and caffeine, at levels usually not toxicologically significant
Tissue Expression(mean ± stddev) Expression Bar
Amygdala2.92 ± 0.91
Basal Forebrain2.18 ± 0.31
Basal Part of Pons2.19 ± 0.77
Cerebellar Cortex3.07 ± 0.49
Cerebellar Nuclei3.02 ± 0.72
Claustrum3.08 ± 0.69
Epithalamus2.76 ± 0.85
Frontal Lobe2.45 ± 0.84
Globus Pallidus2.72 ± 0.68
Hypothalamus2.52 ± 0.84
Insula2.46 ± 0.72
Limbic Lobe2.48 ± 0.69
Mesencephalon2.65 ± 0.81
Myelencephalon2.56 ± 0.72
Occipital Lobe2.64 ± 0.77
Parietal Lobe2.23 ± 0.84
Pontine Tegmentum2.58 ± 0.77
Striatum2.7 ± 0.86
Subthalamus2.48 ± 0.74
Temporal Lobe2.49 ± 0.88
Thalamus2.47 ± 0.66
White Matter2.16 ± 0.46
Mouse Brain ISH
Gene Symbol Brain Structure ID Brain Structure Name Express Desity/Level (Meatured by ISH) Express Bar
Colec11CBCerebellum2.26
2.95
Colec11CTXCerebral cortex0.8
0.82
Colec11HIPHippocampal region1.89
2.06
Colec11HPFHippocampal formation1.46
1.58
Colec11HYHypothalamus3.97
3.89
Colec11LSXLateral septal complex0
0
Colec11MBMidbrain1.11
1.37
Colec11MYMedulla2.89
3.37
Colec11OLFOlfactory bulb1.76
2.54
Colec11PPons1.82
2.33
Colec11PALPallidum2.94
2.99
Colec11RHPRetrohippocampal region0.61
0.8
Colec11sAMYStriatum-like amygdalar nuclei0.27
0.35
Colec11STRStriatum0.77
0.65
Colec11STRdStriatum dorsal region0.41
0.36
Colec11STRvStriatum ventral region3.17
2.32
Colec11THThalamus2.6
2.41
Peptide Top
Peptide Name Peptide Lengh Peptide Start Peptide End Peptide Sequence Source
PAp00374606 17 118 134 AIGEMDNQVSQLTSELK Peptide Atlas

Simple Query:


  (e.g. CHD8)

Syndromic Genes

Non-syndromic Genes

AutismKB Statistics

  • Studies: 1,036
  • Genes: 1,379
  • CNVs/SVs: 5,420
  • SNVs/Indels: 11,669
  • de novo Mutations: 5,669
  • Mosaics: 789
  • Linkage Regions: 172
  • Paper Collected: 6/30/2018
  • Last Update: 8/26/2018


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