AutismKB 2.0

Annotation Detail for CENPM


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Basic Information Top
Gene Symbol:CENPM ( C22orf18,CENP-M,MGC861,PANE1,bK250D10.2 )
Gene Full Name: centromere protein M
Band: 22q13.2
Quick LinksEntrez ID:79019; OMIM: 610152; Uniprot ID:CENPM_HUMAN; ENSEMBL ID: ENSG00000100162; HGNC ID: 18352
Relate to Another Database: SFARIGene; denovo-db
Unigene EST Top
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
embryoid body0 / 707610 
blastocyst2 / 6231932
fetus8 / 56401214
neonate0 / 310970 
infant0 / 236200 
juvenile1 / 5555617
adult26 / 193912113
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
adrenal tumor0 / 127940 
bladder carcinoma0 / 174750 
breast (mammary gland) tumor5 / 9417853
cervical tumor2 / 3436658
chondrosarcoma1 / 8282312
colorectal tumor6 / 11424652
esophageal tumor0 / 172900 
gastrointestinal tumor3 / 11936925
germ cell tumor18 / 26384568
glioma3 / 10688328
head and neck tumor0 / 1363020 
kidney tumor2 / 6895929
leukemia6 / 9584262
liver tumor3 / 9635931
lung tumor9 / 10312787
lymphoma26 / 71755362
non-neoplasia0 / 972500 
normal41 / 336030712
ovarian tumor0 / 766820 
pancreatic tumor2 / 10461619
primitive neuroectodermal tumor of the CNS5 / 12568039
prostate cancer5 / 10268048
retinoblastoma0 / 463560 
skin tumor20 / 124949160
soft tissue/muscle tissue tumor9 / 12519171
uterine tumor0 / 902570 
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
adipose tissue0 / 131060 
adrenal gland0 / 331970 
ascites2 / 4001549
bladder2 / 2975767
blood9 / 12347872
bone4 / 7165555
bone marrow0 / 488010 
brain6 / 11009895
cervix2 / 4817141
connective tissue0 / 1492550 
ear0 / 162120 
embryonic tissue4 / 21572218
esophagus0 / 202090 
eye0 / 2110540 
heart0 / 896260 
intestine11 / 23447246
kidney2 / 2117779
larynx0 / 241450 
liver6 / 20774328
lung12 / 33697435
lymph25 / 44270564
lymph node4 / 9161043
mammary gland5 / 15327132
mouth0 / 670520 
muscle4 / 10771537
nerve0 / 157680 
ovary5 / 10205148
pancreas2 / 2148129
parathyroid0 / 205390 
pharynx0 / 413280 
pituitary gland0 / 165850 
placenta8 / 28082528
prostate6 / 18934531
salivary gland0 / 201550 
skin21 / 21057499
spleen0 / 539520 
stomach0 / 966190 
testis3 / 3304429
thymus0 / 811310 
thyroid0 / 474730 
tonsil2 / 16999117
trachea0 / 524130 
umbilical cord0 / 136800 
uterus5 / 23287821
vascular0 / 517800 
Microarray in BioGPS Top
Select probe  
  • Microarray Platform: GeneAtlas U133A, gcrma
  • Affymatrix Probe ID: 218741_at
Cell line Expression level Expression bar
721_B_lymphoblasts528.3
Adipocyte4.1
AdrenalCortex4.25
Adrenalgland3.5
Amygdala4.45
Appendix4.1
AtrioventricularNode3.15
BDCA4+_DentriticCells5.85
Bonemarrow5.35
BronchialEpithelialCells4.15
CD105+_Endothelial68.2
CD14+_Monocytes4.6
CD19+_BCells(neg._sel.)9.3
CD33+_Myeloid6.5
CD34+101.2
CD4+_Tcells6.3
CD56+_NKCells6.8
CD71+_EarlyErythroid115.1
CD8+_Tcells6.4
CardiacMyocytes6.7
Caudatenucleus3.7
Cerebellum3.35
CerebellumPeduncles4.75
CiliaryGanglion2.9
CingulateCortex4.3
Colorectaladenocarcinoma11.95
DorsalRootGanglion3.1
FetalThyroid4.05
Fetalbrain4.2
Fetalliver4.35
Fetallung3.55
GlobusPallidus3.05
Heart5.55
Hypothalamus4.65
Kidney3.35
Leukemia_chronicMyelogenousK-5624.55
Leukemia_promyelocytic-HL-60135.75
Leukemialymphoblastic(MOLT-4)245.95
Liver5.35
Lung4.7
Lymphnode4.6
Lymphoma_burkitts(Daudi)200.55
Lymphoma_burkitts(Raji)211.5
MedullaOblongata3.8
OccipitalLobe3.75
OlfactoryBulb3.3
Ovary2.75
Pancreas3.35
PancreaticIslet4.45
ParietalLobe4.35
Pituitary4.9
Placenta4.25
Pons3.95
PrefrontalCortex5.15
Prostate5
Salivarygland3.35
SkeletalMuscle4.85
Skin3.2
SmoothMuscle4.8
Spinalcord4.45
SubthalamicNucleus3.75
SuperiorCervicalGanglion4.65
TemporalLobe3.85
Testis4.45
TestisGermCell3.5
TestisIntersitial4
TestisLeydigCell4.1
TestisSeminiferousTubule3.6
Thalamus4.25
Thymus24.05
Thyroid5.3
Tongue4.05
Tonsil13.3
Trachea3.5
TrigeminalGanglion4.05
Uterus3.45
UterusCorpus3.65
WholeBlood4.7
Wholebrain3.4
colon8.2
pineal_day5.14
pineal_night5.02
retina5.1
small_intestine5.4
Allen Brain Atlas Top
Human Whole Brain Microarrayview in Allen Brain Atlas
  • Probe id     Donor id      
  • Probe name: CUST_4894_PI416261804
  • Donor H0351.2001
  • Sex: Male     Age: 24 years     Race/Ethnicity: African American     Handedness: Left
  • Tissue Receipt Date: 7/29/2009     Serology: Pass      Tissue pH :6.72     Additional Medical Information :History of asthma
  • Postmortem Interval: 23 hours (estimated time of death to time that tissue is frozen)
  • Toxicology: Positive for atropine and caffeine, at levels usually not toxicologically significant
Tissue Expression(mean ± stddev) Expression Bar
Amygdala2.37 ± 0.81
Basal Forebrain2.02 ± 0.57
Basal Part of Pons2.01 ± 0.67
Cerebellar Cortex2.21 ± 0.86
Cerebellar Nuclei2.41 ± 0.77
Claustrum2.68 ± 0.85
Epithalamus1.58 ± 0.54
Frontal Lobe2.07 ± 0.83
Globus Pallidus2.3 ± 0.58
Hypothalamus1.67 ± 0.52
Insula1.84 ± 0.7
Limbic Lobe2.22 ± 0.86
Mesencephalon2.08 ± 0.75
Myelencephalon2.18 ± 0.79
Occipital Lobe2 ± 0.7
Parietal Lobe2.08 ± 0.79
Pontine Tegmentum2.02 ± 0.97
Striatum2.03 ± 0.79
Subthalamus2.41 ± 0.1
Temporal Lobe2.03 ± 0.89
Thalamus2.05 ± 0.71
White Matter1.96 ± 0.4
Mouse Brain ISH
Gene Symbol Brain Structure ID Brain Structure Name Express Desity/Level (Meatured by ISH) Express Bar
CenpmCBCerebellum0.02
0.1
CenpmCTXCerebral cortex1.13
0.96
CenpmHIPHippocampal region0.79
0.79
CenpmHPFHippocampal formation0.52
0.53
CenpmHYHypothalamus0.87
1.35
CenpmLSXLateral septal complex0.09
0.09
CenpmMBMidbrain0.21
0.71
CenpmMYMedulla0.03
0.12
CenpmOLFOlfactory bulb0.9
1.22
CenpmPPons0.05
0.22
CenpmPALPallidum0.89
1.65
CenpmRHPRetrohippocampal region0.06
0.17
CenpmsAMYStriatum-like amygdalar nuclei0.2
0.13
CenpmSTRStriatum0.17
0.19
CenpmSTRdStriatum dorsal region0.16
0.18
CenpmSTRvStriatum ventral region0.21
0.32
CenpmTHThalamus0.85
1.21
Peptide Top

Simple Query:


  (e.g. CHD8)

Syndromic Genes

Non-syndromic Genes

AutismKB Statistics

  • Studies: 1,036
  • Genes: 1,379
  • CNVs/SVs: 5,420
  • SNVs/Indels: 11,669
  • de novo Mutations: 5,669
  • Mosaics: 789
  • Linkage Regions: 172
  • Paper Collected: 6/30/2018
  • Last Update: 8/26/2018


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