AutismKB 2.0

Annotation Detail for SECISBP2


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Basic Information Top
Gene Symbol:SECISBP2 ( DKFZp686C09169,SBP2 )
Gene Full Name: SECIS binding protein 2
Band: 9q22.2
Quick LinksEntrez ID:79048; OMIM: 607693; Uniprot ID:SEBP2_HUMAN; ENSEMBL ID: ENSG00000187742; HGNC ID: 30972
Relate to Another Database: SFARIGene; denovo-db
Unigene EST Top
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
embryoid body5 / 7076170
blastocyst12 / 62319192
fetus50 / 56401288
neonate0 / 310970 
infant1 / 2362042
juvenile4 / 5555671
adult136 / 193912170
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
adrenal tumor1 / 1279478
bladder carcinoma1 / 1747557
breast (mammary gland) tumor4 / 9417842
cervical tumor1 / 3436629
chondrosarcoma3 / 8282336
colorectal tumor4 / 11424635
esophageal tumor1 / 1729057
gastrointestinal tumor9 / 11936975
germ cell tumor15 / 26384556
glioma2 / 10688318
head and neck tumor24 / 136302176
kidney tumor4 / 6895958
leukemia5 / 9584252
liver tumor7 / 9635972
lung tumor3 / 10312729
lymphoma3 / 7175541
non-neoplasia5 / 9725051
normal214 / 336030763
ovarian tumor5 / 7668265
pancreatic tumor2 / 10461619
primitive neuroectodermal tumor of the CNS5 / 12568039
prostate cancer3 / 10268029
retinoblastoma4 / 4635686
skin tumor4 / 12494932
soft tissue/muscle tissue tumor4 / 12519131
uterine tumor6 / 9025766
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
adipose tissue0 / 131060 
adrenal gland3 / 3319790
ascites5 / 40015124
bladder0 / 297570 
blood5 / 12347840
bone2 / 7165527
bone marrow0 / 488010 
brain50 / 110098945
cervix1 / 4817120
connective tissue7 / 14925546
ear1 / 1621261
embryonic tissue25 / 215722115
esophagus1 / 2020949
eye24 / 211054113
heart7 / 8962678
intestine15 / 23447263
kidney11 / 21177751
larynx1 / 2414541
liver19 / 20774391
lung18 / 33697453
lymph3 / 4427067
lymph node5 / 9161054
mammary gland7 / 15327145
mouth3 / 6705244
muscle4 / 10771537
nerve1 / 1576863
ovary6 / 10205158
pancreas16 / 21481274
parathyroid0 / 205390 
pharynx1 / 4132824
pituitary gland0 / 165850 
placenta12 / 28082542
prostate6 / 18934531
salivary gland1 / 2015549
skin6 / 21057428
spleen0 / 539520 
stomach4 / 9661941
testis46 / 330442139
thymus9 / 81131110
thyroid19 / 47473400
tonsil0 / 169990 
trachea5 / 5241395
umbilical cord0 / 136800 
uterus11 / 23287847
vascular1 / 5178019
Microarray in BioGPS Top
Select probe  
  • Microarray Platform: GeneAtlas U133A, gcrma
  • Affymatrix Probe ID: 218265_at
Cell line Expression level Expression bar
721_B_lymphoblasts54.4
Adipocyte24.65
AdrenalCortex29.4
Adrenalgland21.4
Amygdala41.9
Appendix25.55
AtrioventricularNode21
BDCA4+_DentriticCells69.15
Bonemarrow26.3
BronchialEpithelialCells11.6
CD105+_Endothelial30.25
CD14+_Monocytes37.8
CD19+_BCells(neg._sel.)125.05
CD33+_Myeloid46.85
CD34+42.5
CD4+_Tcells170.15
CD56+_NKCells50.95
CD71+_EarlyErythroid33.85
CD8+_Tcells198.1
CardiacMyocytes33.65
Caudatenucleus25.3
Cerebellum20.8
CerebellumPeduncles29.6
CiliaryGanglion20.4
CingulateCortex25.9
Colorectaladenocarcinoma32.1
DorsalRootGanglion20.2
FetalThyroid31.05
Fetalbrain27.2
Fetalliver22.2
Fetallung20.5
GlobusPallidus15.05
Heart32.9
Hypothalamus30.65
Kidney21.4
Leukemia_chronicMyelogenousK-56226.6
Leukemia_promyelocytic-HL-6040.25
Leukemialymphoblastic(MOLT-4)34.3
Liver33.85
Lung27.3
Lymphnode33.7
Lymphoma_burkitts(Daudi)35.55
Lymphoma_burkitts(Raji)105.8
MedullaOblongata23.95
OccipitalLobe18.35
OlfactoryBulb20.25
Ovary28.35
Pancreas21.9
PancreaticIslet35.85
ParietalLobe28.35
Pituitary34
Placenta32.8
Pons23.95
PrefrontalCortex34.7
Prostate30
Salivarygland21.8
SkeletalMuscle30.65
Skin20.1
SmoothMuscle26.5
Spinalcord26
SubthalamicNucleus23.1
SuperiorCervicalGanglion30.3
TemporalLobe23.3
Testis42.9
TestisGermCell95.9
TestisIntersitial92.55
TestisLeydigCell83.55
TestisSeminiferousTubule56.8
Thalamus27.15
Thymus19.85
Thyroid90.35
Tongue22.75
Tonsil27.9
Trachea19.1
TrigeminalGanglion26.85
Uterus27.9
UterusCorpus22.8
WholeBlood30.7
Wholebrain23.15
colon29.5
pineal_day87.36
pineal_night94.54
retina31.725
small_intestine20
Allen Brain Atlas Top
Human Whole Brain Microarrayview in Allen Brain Atlas
  • Probe id     Donor id      
  • Probe name: A_24_P119482
  • Donor H0351.2001
  • Sex: Male     Age: 24 years     Race/Ethnicity: African American     Handedness: Left
  • Tissue Receipt Date: 7/29/2009     Serology: Pass      Tissue pH :6.72     Additional Medical Information :History of asthma
  • Postmortem Interval: 23 hours (estimated time of death to time that tissue is frozen)
  • Toxicology: Positive for atropine and caffeine, at levels usually not toxicologically significant
Tissue Expression(mean ± stddev) Expression Bar
Amygdala9.37 ± 0.1
Basal Forebrain9.32 ± 0.12
Basal Part of Pons9.48 ± 0.28
Cerebellar Cortex9.58 ± 0.12
Cerebellar Nuclei9.39 ± 0.15
Claustrum9.19 ± 0.19
Epithalamus9.63 ± 0.26
Frontal Lobe9.35 ± 0.24
Globus Pallidus9.14 ± 0.23
Hypothalamus9.34 ± 0.19
Insula9.33 ± 0.11
Limbic Lobe9.42 ± 0.29
Mesencephalon9.35 ± 0.22
Myelencephalon9.36 ± 0.22
Occipital Lobe9.63 ± 0.19
Parietal Lobe9.4 ± 0.17
Pontine Tegmentum9.4 ± 0.2
Striatum9.7 ± 0.25
Subthalamus9.32 ± 0.15
Temporal Lobe9.37 ± 0.18
Thalamus9.29 ± 0.16
White Matter9.83 ± 0.05
Mouse Brain ISH
Gene Symbol Brain Structure ID Brain Structure Name Express Desity/Level (Meatured by ISH) Express Bar
Secisbp2CBCerebellum51.24
71.87
Secisbp2CTXCerebral cortex100
100
Secisbp2HIPHippocampal region75.9
100
Secisbp2HPFHippocampal formation90.1
100
Secisbp2HYHypothalamus80.63
72.92
Secisbp2LSXLateral septal complex86.41
63.77
Secisbp2MBMidbrain90.22
86.16
Secisbp2MYMedulla81.48
94.21
Secisbp2OLFOlfactory bulb100
100
Secisbp2PPons77.32
84.16
Secisbp2PALPallidum79.42
79.19
Secisbp2RHPRetrohippocampal region100
97.48
Secisbp2sAMYStriatum-like amygdalar nuclei100
99.41
Secisbp2STRStriatum100
87.53
Secisbp2STRdStriatum dorsal region100
88.81
Secisbp2STRvStriatum ventral region100
87.06
Secisbp2THThalamus100
100
Peptide Top
Peptide Name Peptide Lengh Peptide Start Peptide End Peptide Sequence Source
PAp00501423 16 608 623 DTEASHLAPNHTTFPK Peptide Atlas

Simple Query:


  (e.g. CHD8)

Syndromic Genes

Non-syndromic Genes

AutismKB Statistics

  • Studies: 1,036
  • Genes: 1,379
  • CNVs/SVs: 5,420
  • SNVs/Indels: 11,669
  • de novo Mutations: 5,669
  • Mosaics: 789
  • Linkage Regions: 172
  • Paper Collected: 6/30/2018
  • Last Update: 8/26/2018


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