AutismKB 2.0

Annotation Detail for ATG9A


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Basic Information Top
Gene Symbol:ATG9A ( APG9L1,MGD3208 )
Gene Full Name: ATG9 autophagy related 9 homolog A (S. cerevisiae)
Band: 2q35
Quick LinksEntrez ID:79065; OMIM: 612204; Uniprot ID:ATG9A_HUMAN; ENSEMBL ID: ENSG00000198925; HGNC ID: 22408
Relate to Another Database: SFARIGene; denovo-db
Unigene EST Top
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
embryoid body2 / 7076128
blastocyst5 / 6231980
fetus49 / 56401286
neonate1 / 3109732
infant0 / 236200 
juvenile2 / 5555635
adult123 / 193912163
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
adrenal tumor0 / 127940 
bladder carcinoma3 / 17475171
breast (mammary gland) tumor8 / 9417884
cervical tumor2 / 3436658
chondrosarcoma9 / 82823108
colorectal tumor4 / 11424635
esophageal tumor1 / 1729057
gastrointestinal tumor10 / 11936983
germ cell tumor15 / 26384556
glioma10 / 10688393
head and neck tumor17 / 136302124
kidney tumor5 / 6895972
leukemia4 / 9584241
liver tumor9 / 9635993
lung tumor4 / 10312738
lymphoma1 / 7175513
non-neoplasia1 / 9725010
normal333 / 336030799
ovarian tumor11 / 76682143
pancreatic tumor11 / 104616105
primitive neuroectodermal tumor of the CNS19 / 125680151
prostate cancer11 / 102680107
retinoblastoma3 / 4635664
skin tumor23 / 124949184
soft tissue/muscle tissue tumor4 / 12519131
uterine tumor5 / 9025755
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
adipose tissue0 / 131060 
adrenal gland1 / 3319730
ascites4 / 4001599
bladder3 / 29757100
blood5 / 12347840
bone4 / 7165555
bone marrow1 / 4880120
brain208 / 1100989188
cervix7 / 48171145
connective tissue6 / 14925540
ear0 / 162120 
embryonic tissue13 / 21572260
esophagus1 / 2020949
eye13 / 21105461
heart3 / 8962633
intestine12 / 23447251
kidney12 / 21177756
larynx4 / 24145165
liver11 / 20774352
lung28 / 33697483
lymph1 / 4427022
lymph node0 / 916100 
mammary gland9 / 15327158
mouth12 / 67052178
muscle9 / 10771583
nerve2 / 15768126
ovary12 / 102051117
pancreas11 / 21481251
parathyroid0 / 205390 
pharynx0 / 413280 
pituitary gland2 / 16585120
placenta25 / 28082589
prostate14 / 18934573
salivary gland2 / 2015599
skin27 / 210574128
spleen3 / 5395255
stomach3 / 9661931
testis95 / 330442287
thymus12 / 81131147
thyroid2 / 4747342
tonsil0 / 169990 
trachea9 / 52413171
umbilical cord2 / 13680146
uterus16 / 23287868
vascular1 / 5178019
Microarray in BioGPS Top
Select probe  
  • Microarray Platform: GeneAtlas U133A, gcrma
  • Affymatrix Probe ID: 202492_at
Cell line Expression level Expression bar
721_B_lymphoblasts26.9
Adipocyte30.55
AdrenalCortex28.35
Adrenalgland29.8
Amygdala39.65
Appendix28.2
AtrioventricularNode13.3
BDCA4+_DentriticCells13.95
Bonemarrow27.55
BronchialEpithelialCells29.5
CD105+_Endothelial42.8
CD14+_Monocytes30.6
CD19+_BCells(neg._sel.)11.35
CD33+_Myeloid28.6
CD34+24.15
CD4+_Tcells31.6
CD56+_NKCells24.35
CD71+_EarlyErythroid135.05
CD8+_Tcells25.6
CardiacMyocytes34.7
Caudatenucleus38.8
Cerebellum26
CerebellumPeduncles38.85
CiliaryGanglion6.4
CingulateCortex36.9
Colorectaladenocarcinoma33.1
DorsalRootGanglion15.95
FetalThyroid23.15
Fetalbrain25.85
Fetalliver29.5
Fetallung24.1
GlobusPallidus24.65
Heart101.7
Hypothalamus31.55
Kidney21.85
Leukemia_chronicMyelogenousK-56224.4
Leukemia_promyelocytic-HL-609
Leukemialymphoblastic(MOLT-4)9.4
Liver75.55
Lung43.15
Lymphnode11.1
Lymphoma_burkitts(Daudi)23.35
Lymphoma_burkitts(Raji)42.3
MedullaOblongata26.6
OccipitalLobe36.75
OlfactoryBulb22.35
Ovary15.95
Pancreas25.75
PancreaticIslet28.6
ParietalLobe29.5
Pituitary23.25
Placenta49.9
Pons28.65
PrefrontalCortex71.45
Prostate69.8
Salivarygland14.5
SkeletalMuscle31.1
Skin16.35
SmoothMuscle33.65
Spinalcord30.35
SubthalamicNucleus25.5
SuperiorCervicalGanglion27
TemporalLobe38.85
Testis203.05
TestisGermCell55.3
TestisIntersitial93.65
TestisLeydigCell48.65
TestisSeminiferousTubule81.1
Thalamus63.5
Thymus20.5
Thyroid30.5
Tongue23.3
Tonsil8.45
Trachea15.65
TrigeminalGanglion18.25
Uterus32.55
UterusCorpus20.1
WholeBlood30.35
Wholebrain72.9
colon23.5
pineal_day37.76
pineal_night38.78
retina39.25
small_intestine21.5
Allen Brain Atlas Top
Human Whole Brain Microarrayview in Allen Brain Atlas
  • Probe id     Donor id      
  • Probe name: A_23_P165450
  • Donor H0351.2001
  • Sex: Male     Age: 24 years     Race/Ethnicity: African American     Handedness: Left
  • Tissue Receipt Date: 7/29/2009     Serology: Pass      Tissue pH :6.72     Additional Medical Information :History of asthma
  • Postmortem Interval: 23 hours (estimated time of death to time that tissue is frozen)
  • Toxicology: Positive for atropine and caffeine, at levels usually not toxicologically significant
Tissue Expression(mean ± stddev) Expression Bar
Amygdala7.86 ± 0.53
Basal Forebrain8.09 ± 0.19
Basal Part of Pons8.6 ± 0.32
Cerebellar Cortex8.44 ± 0.23
Cerebellar Nuclei8.17 ± 0.23
Claustrum8.03 ± 0.44
Epithalamus7.94 ± 0.24
Frontal Lobe8.42 ± 0.3
Globus Pallidus7.61 ± 0.14
Hypothalamus8.38 ± 0.25
Insula8.42 ± 0.25
Limbic Lobe8.2 ± 0.32
Mesencephalon8.19 ± 0.29
Myelencephalon8.29 ± 0.34
Occipital Lobe7.91 ± 0.38
Parietal Lobe8.3 ± 0.33
Pontine Tegmentum8.1 ± 0.3
Striatum7.82 ± 0.36
Subthalamus8.36 ± 0.15
Temporal Lobe8.41 ± 0.31
Thalamus8.29 ± 0.33
White Matter8.2 ± 0.23
Mouse Brain ISH
Gene Symbol Brain Structure ID Brain Structure Name Express Desity/Level (Meatured by ISH) Express Bar
Atg9aCBCerebellum18.65
24.39
Atg9aCTXCerebral cortex46.83
37.79
Atg9aHIPHippocampal region25.23
30.03
Atg9aHPFHippocampal formation25.5
26.34
Atg9aHYHypothalamus6.77
5.33
Atg9aLSXLateral septal complex12.25
10.59
Atg9aMBMidbrain7.98
7.51
Atg9aMYMedulla19.93
22.97
Atg9aOLFOlfactory bulb30.45
25.21
Atg9aPPons15.66
16.93
Atg9aPALPallidum13.42
12.88
Atg9aRHPRetrohippocampal region26.71
21.9
Atg9asAMYStriatum-like amygdalar nuclei7.84
5.74
Atg9aSTRStriatum13.66
10.04
Atg9aSTRdStriatum dorsal region14.02
10.3
Atg9aSTRvStriatum ventral region16.09
11.11
Atg9aTHThalamus25
22.12
Peptide Top
Peptide Name Peptide Lengh Peptide Start Peptide End Peptide Sequence Source
ATG9A_HUMAN_668 13 668 680 AHSTMTGSGVDAR PRIDE
PAp00040694 12 342 353 HFNELEHELQSR Peptide Atlas

Simple Query:


  (e.g. CHD8)

Syndromic Genes

Non-syndromic Genes

AutismKB Statistics

  • Studies: 1,036
  • Genes: 1,379
  • CNVs/SVs: 5,420
  • SNVs/Indels: 11,669
  • de novo Mutations: 5,669
  • Mosaics: 789
  • Linkage Regions: 172
  • Paper Collected: 6/30/2018
  • Last Update: 8/26/2018


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